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Construction of two recombination yeast two-hybrid vectors by in vitro recombination

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Abstract

Recombination-based restrictionless, ligation-independent cloning has been proven to be advantageous over restriction digestion and ligation cloning. To utilize the recombination cloning and previously constructed two-hybrid cDNA libraries, a new Gateway yeast two-hybrid bait vector, pEZY202, and a new prey vector, pEZY45, were constructed. The two-hybrid vectors were generated by in vitro recombination using a protocol that can be easily adapted for the conversion of other existing vectors. The new vectors were used to assay the interaction between the WW domain of PQBP1 (PQBPww) and the WW domain binding protein WBP11. Both PQBPww and WBP11 were cloned into a Gateway donor vector by in vitro recombination. They were then subcloned into pEZY45 and pEZY202, respectively, by in vitro recombination. The binding between PQBPww and WBP11 was reported in a two-hybrid experiment using the new vectors. The results of testing the new vectors in combination with the original vectors indicated that the new bait vector could be used to screen cDNA libraries that are constructed using the original prey vectors.

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References

  1. Michaud, G. A., & Snyder, M. (2002). Proteomic approaches for the global analysis of proteins. Biotechniques, 33, 1308–1316.

    PubMed  CAS  Google Scholar 

  2. Friedman, A., & Perrimon, N. (2004). Genome-wide high-throughput screens in functional genomics. Current Opinion in Genetics & Development, 14, 470–476.

    Article  CAS  Google Scholar 

  3. Hartley, J. L., Temple, G. F., & Brasch, M. A. (2000). DNA cloning using in vitro site-specific recombination. Genome Research, 10, 1788–1795.

    Article  PubMed  CAS  Google Scholar 

  4. Liu, Q., Li, M. Z., Leibham, D., Cortez, D., & Elledge, S. J. (1998). The univector plasmid-fusion system, a method for rapid construction of recombinant DNA without restriction enzymes. Current Biology, 8, 1300–1309.

    Article  PubMed  CAS  Google Scholar 

  5. Walhout, A. J., Temple, G. F., Brasch, M. A., Hartley, J. L., Lorson, M.␣A., van den Heuvel, S., & Vidal, M. (2000). GATEWAY recombinational cloning: Application to the cloning of large numbers of open reading frames or ORFeomes. Methods in Enzymology, 328, 575–592.

    Article  PubMed  CAS  Google Scholar 

  6. Landy, A. (1989). Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Annual Review of Biochemistry, 58, 913–949.

    Article  PubMed  CAS  Google Scholar 

  7. Sulzenbacher, G., Gruez, A., Roig-Zamboni, V., Spinelli, S., Valencia, C., Pagot, F., Vincentelli, R., Bignon, C., Salomoni, A., Grisel, S., Maurin, D., Huyghe, C., Johansson, K., Grassick, A., Roussel, A., Bourne, Y., Perrier, S., Miallau, L., Cantau, P., Blanc, E., Genevois, M., Grossi, A., Zenatti, A., Campanacci, V., &␣Cambillau, C. (2002). A medium-throughput crystallization approach. Acta Crystallographica. Section D, Biological Crystallography, 58, 2109–2115.

    Article  PubMed  CAS  Google Scholar 

  8. Ding, H. T., Ren, H., Chen, Q., Fang, G., Li, L. F., Li, R., Wang, Z., Jia, X. Y., Liang, Y. H., Hu, M. H., Li, Y., Luo, J. C., Gu, X.␣C., Su, X. D., Luo, M., & Lu, S. Y. (2002). Parallel cloning, expression, purification and crystallization of human proteins for structural genomics. Acta Crystallographica. Section D, Biological Crystallography, 58, 2102–2108.

    Article  PubMed  CAS  Google Scholar 

  9. Karimi, M., Inze, D., & Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends in Plant Science, 7, 193–195.

    Article  PubMed  CAS  Google Scholar 

  10. Daouti, S., Latario, B., Nagulapalli, S., Buxton, F., Uziel-Fusi, S., Chirn, G. W., Bodian, D., Song, C., Labow, M., Lotz, M., Quintavalla, J., & Kumar, C. (2005). Development of comprehensive functional genomic screens to identify novel mediators of osteoarthritis. Osteoarthritis Cartilage, 13, 508–518.

    Article  PubMed  CAS  Google Scholar 

  11. Brizuela, L., Richardson, A., Marsischky, G., & Labaer, J. (2002). The FLEXGene repository: Exploiting the fruits of the genome projects by creating a needed resource to face the challenges of the post-genomic era. Archives of Medical Research, 33, 318–324.

    Article  PubMed  CAS  Google Scholar 

  12. Earley, K. W., Haag, J. R., Pontes, O., Opper, K., Juehne, T., Song, K., & Pikaard, C. S. (2006). Gateway-compatible vectors for plant functional genomics and proteomics. Plant Journal, 45, 616–629.

    Article  PubMed  CAS  Google Scholar 

  13. Esposito, D., Gillette, W. K., Miller, D. A., Taylor, T. E., Frank, P. H., Hu, R., Bekisz, J., Hernandez, J., Cregg, J. M., Zoon, K. C., & Hartley, J. L. (2005). Gateway cloning is compatible with protein secretion from Pichia pastoris. Protein Expression and Purification, 40, 424–428.

    Article  PubMed  CAS  Google Scholar 

  14. Fields, S., & Sternglanz, R. (1994). The two-hybrid system: An assay for protein-protein interactions. Trends in Genetics, 10, 286–292.

    Article  PubMed  CAS  Google Scholar 

  15. Toby, G. G., & Golemis, E. A. (2001). Using the yeast interaction trap and other two-hybrid-based approaches to study protein-protein interactions. Methods, 24, 201–217.

    Article  PubMed  CAS  Google Scholar 

  16. Drees, B. L., Sundin, B., Brazeau, E., Caviston, J. P., Chen, G. C., Guo, W., Kozminski, K. G., Lau, M. W., Moskow, J. J., Tong, A., Schenkman, L. R., McKenzie, A. 3rd, Brennwald, P., Longtine, M., Bi, E., Chan, C., Novick, P., Boone, C., Pringle, J. R., Davis, T. N., Fields, S., & Drubin, D. G. (2001). A protein interaction map for cell polarity development. Journal of Cell Biology, 154, 549–571.

    Article  PubMed  CAS  Google Scholar 

  17. Tucker, C. L., Gera, J. F., & Uetz, P. (2001). Towards an understanding of complex protein networks. Trends in Cell Biology, 11, 102–106.

    Article  PubMed  CAS  Google Scholar 

  18. Cusick, M. E., Klitgord, N., Vidal, M., & Hill, D. E. (2005). Interactome: Gateway into systems biology. Human Molecular Genetics, 14(Spec No. 2), R171–181.

    Google Scholar 

  19. Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., Qureshi-Emili, A., Li, Y., Godwin, B., Conover, D., Kalbfleisch, T., Vijayadamodar, G., Yang, M., Johnston, M., Fields, S., & Rothberg, J. M. (2000). A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature, 403, 623–627.

    Article  PubMed  CAS  Google Scholar 

  20. Rual, J. F., Venkatesan, K., Hao, T., Hirozane-Kishikawa, T., Dricot, A., Li, N., Berriz, G. F., Gibbons, F. D., Dreze, M., Ayivi-Guedehoussou, N., Klitgord, N., Simon, C., Boxem, M., Milstein, S., Rosenberg, J., Goldberg, D. S., Zhang, L. V., Wong, S. L., Franklin, G., Li, S., Albala, J. S., Lim, J., Fraughton, C., Llamosas, E., Cevik, S., Bex, C., Lamesch, P., Sikorski, R. S., Vandenhaute, J., Zoghbi, H. Y., Smolyar, A., Bosak, S., Sequerra, R., Doucette-Stamm, L., Cusick, M. E., Hill, D. E., Roth, F. P., &␣Vidal, M. (2005). Towards a proteome-scale map of the human protein-protein interaction network. Nature, 437, 1173–1178.

    Article  PubMed  CAS  Google Scholar 

  21. Gao, Y. K., Jiang, M., Yang, T., & Chen, J. Y. (2006). Analysis of the interaction between hPFTAIRE1 and PLZF in a yeast two-hybrid system. Acta Biochimica et Biophysica Sinica (Shanghai), 38, 164–170.

    Article  CAS  Google Scholar 

  22. Vittone, V., Diefenbach, E., Triffett, D., Douglas, M. W., Cunningham, A. L., & Diefenbach, R. J. (2005). Determination of interactions between tegument proteins of herpes simplex virus type 1. Journal of Virology, 79, 9566–9571.

    Article  PubMed  CAS  Google Scholar 

  23. Clark, D. D., & Peterson, B. R. (2005). Fluorescence-based cloning of a protein tyrosine kinase with a yeast tribrid system. Chembiochem, 6, 1442–1448.

    Article  PubMed  CAS  Google Scholar 

  24. Markus, S. M., Taneja, S. S., Logan, S. K., Li, W., Ha, S., Hittelman, A. B., Rogatsky, I., & Garabedian, M. J. (2002). Identification and characterization of ART-27, a novel coactivator for the androgen receptor N terminus. Molecular Biology of the Cell, 13, 670–682.

    Article  PubMed  CAS  Google Scholar 

  25. Golemis, E. A., Gyuris, J., & Brent, R. (1994). Two-hybrid system/interaction traps. In F. M. Ausubel, R. R. K Brent, D. D. Moore, J. G. Seidman, H. A. smith, & K. Struhl (Eds.), Current protocols in molecular biology, (pp. 20.21.21–20.21.28). New York: John wiley & Sons.

    Google Scholar 

  26. Llorian, M., Beullens, M., Lesage, B., Nicolaescu, E., Beke, L., Landuyt, W., Ortiz, J. M., & Bollen, M. (2005). Nucleocytoplasmic shuttling of the splicing factor SIPP1. J Biol Chem, 280, 38862–38869.

    Article  PubMed  CAS  Google Scholar 

  27. Craggs, G., Finan, P. M., Lawson, D., Wingfield, J., Perera, T., Gadher, S., Totty, N. F., & Kellie, S. (2001). A nuclear SH3 domain-binding protein that colocalizes with mRNA splicing factors and intermediate filament-containing perinuclear networks. J Biol Chem, 276, 30552–30560.

    Article  PubMed  CAS  Google Scholar 

  28. Komuro, A., Saeki, M., & Kato, S. (1999). Association of two nuclear proteins, Npw38 and NpwBP, via the interaction between the WW domain and a novel proline-rich motif containing glycine and arginine. The Journal of Biological Chemistry, 274, 36513–36519.

    Article  PubMed  CAS  Google Scholar 

  29. Zhang, Y. Z., Gould, K. L., Dunbrack, R. J., Cheng, H., Roder, H., & Golemis, E. A. (1999). The evolutionarily conserved Dim1 protein defines a novel branch of the thioredoxin fold superfamily. Physiological Genomics, 1, 109–118.

    PubMed  CAS  Google Scholar 

  30. Jin, T., Howard, A. J., Golemis, E. A., Wang, Y., & Zhang, Y. (2005). Overexproduction, purification, crystallization and preliminary X-ray diffraction studies of the human splicesome protein TXNL4B. Acta Crystallographica, F61, 282–284.

    CAS  Google Scholar 

  31. Zhang, Y. Z., Lindblom, T., Chang, A., Sudol, M., Sluder, A. E., & Golemis, E. A. (2000). Evidence that dim1 associates with proteins involved in pre-mRNA splicing, and delineation of residues essential for dim1 interactions with hnRNP F and Npw38/PQBP-1. Gene, 257, 33–43.

    Article  PubMed  CAS  Google Scholar 

  32. Bernard, P., & Couturier, M. (1992). Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes. Journal of Molecular Biology, 226, 735–745.

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Yu-Zhu Zhang.

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Guo, F., Wang, Y. & Zhang, YZ. Construction of two recombination yeast two-hybrid vectors by in vitro recombination. Mol Biotechnol 36, 38–43 (2007). https://doi.org/10.1007/s12033-007-0018-0

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