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Expression of Recombinant Proteins in Pichia Pastoris

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Abstract

Pichia pastoris has been used extensively and successfully to express recombinant proteins. In this review, we summarize the elements required for expressing heterologous proteins, and discuss various factors in applying this system for protein expression. These elements include vectors, host strains, heterologous gene integration into the genome, secretion factors, and the glycosylation profile. In particular, we discuss and evaluate the recent progress in optimizing the fermentation process to improve the yield and stability of expressed proteins. Optimization can be achieved by controlling the medium composition, pH, temperature, and dissolved oxygen, as well as by methanol induction and feed mode.

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References

  1. Romanos, M. A., Scorer, C. A., & Clare, J. J. (1992). Yeast, 8, 423–488.

    Article  CAS  Google Scholar 

  2. Cregg, J. M., Vedvick, T. S., & Raschke, W. C. (1993). Biotechnology (NY), 11, 905–910.

    Article  CAS  Google Scholar 

  3. Li, P. Z., Gao, X.-G., Arellano, R. O., & Renugopalakrishnan, V. (2001). Protein Expression and Purification, 22, 369–380.

    Article  CAS  Google Scholar 

  4. Cereghino, G. P., Cereghino, J. L., Ilgen, C., & Cregg, J. M. (2002). Current Opinion in Biotechnology, 13, 329–332.

    Article  Google Scholar 

  5. Higgins, D. R., & Cregg, J. M. (1998). Methods in Molecular Biology, 103, 1–15.

    CAS  Google Scholar 

  6. Lin-Cereghino, G. P., Sunga, A. J., Lin Cereghino, J., & Cregg, J. M. (2001). Genetic Engineering (NY), 23, 157–169.

    Article  CAS  Google Scholar 

  7. Koutz, P. J., Davis, G. R., Stillman, C., Barringer, K., Cregg, J., & Thill, G. (1989). Yeast, 5, 167–177.

    Article  CAS  Google Scholar 

  8. Waterham, H. R., Digan, M. E., Koutz, P. J., Lair, S. V., & Cregg, J. M. (1997). Gene, 186, 37–44.

    Article  CAS  Google Scholar 

  9. Shen, S., Sulter, G., Jeffries, T. W., & Cregg, J. M. (1998). Gene, 216, 93–102.

    Article  CAS  Google Scholar 

  10. Brierley, R. A. (1998). Methods in Molecular Biology, 103, 149–177.

    CAS  Google Scholar 

  11. Liu, H., Tan, X., Russell, T. A., Veenhuis, M., & Cregg, J. M. (1995). Journal of Biological Chemistry, 270, 10940–10951.

    Article  CAS  Google Scholar 

  12. Sears, I. B., O’Connor, J., Rossanese, O. W., & Glick, B. S. (1998). Yeast, 14, 783–790.

    Article  CAS  Google Scholar 

  13. Clare, J. J., Romanos, M. A., Rayment, F. B., Rowedder, J. E., Smith, M. A., Payne, M. M., et al. (1991). Gene, 105, 205–212.

    Article  CAS  Google Scholar 

  14. Cregg, J. M., Barringer, K. J., Hessler, A. Y., & Madden, K. R. (1985). Molecular and Cellular Biology, 5, 3376–3385.

    CAS  Google Scholar 

  15. Cregg, J. M., & Madden, K. R. (1989). Molecular and General Genetics, 219, 320–323.

    CAS  Google Scholar 

  16. Higgins, D. R., Busser, K., Comiskey, J., Whittier, P. S., Purcell, T. J., & Hoeffler, J. P. (1998). Methods in Molecular Biology, 103, 41–53.

    CAS  Google Scholar 

  17. Cereghino, J. L., & Cregg, J. M. (2000). FEMS Microbiology Reviews, 24, 45–66.

    Article  CAS  Google Scholar 

  18. Veenhuis, M., van Dijken, J. P., & Harder, W. (1983). Advances in Microbial Physiology, 24, 1–82.

    CAS  Google Scholar 

  19. Tschopp, J. F., Sverlow, G., Kosson, R., Craig, W., & Grinna, L. (1987). Biotechnology (NY), 5, 1305–1308.

    Article  CAS  Google Scholar 

  20. Cregg, J. M., & Madden, K. R. (1987). In. G. G. Stewart, I. Russell, R. D. Klein, & R. R. Hiebsch (Eds.), Biological Research on Yeasts, Vol. 2. Boca Raton, FL.: CRC Press.

    Google Scholar 

  21. Chiruvolu, V., Cregg, J. M., & Meagher, M. M. (1997). Enzyme and Microbial Technology, 21, 277–283.

    Article  CAS  Google Scholar 

  22. White, C. E., Hunter, M. J., Meininger, D. P., White, L. R., & Komives, E. A. (1995). Protein Engineering, 8, 1177–1187.

    Article  CAS  Google Scholar 

  23. Scorer, C. A., Clare, J. J., McCombie, W. R., Romanos, M. A., & Sreekrishna, K. (1994). Biotechnology (NY), 12, 181–184.

    Article  CAS  Google Scholar 

  24. Liu, H., Tan, X., Veenhuis, M., McCollum, D., & Cregg, J. M. (1992). Bacteriology, 174, 4943–4951.

    CAS  Google Scholar 

  25. Waterham, H. R., de Vries, Y., Russell, K. A., Xie, W., Veenhuis, M., & Cregg, J. M. (1996). Molecular and Cellular Biology, 16, 2527–2536.

    CAS  Google Scholar 

  26. Cregg, J. M., & Russell, K. A. (1998). Methods in Molecular Biology, 103, 27–39.

    CAS  Google Scholar 

  27. Sreekrishna, K., Potenz, R. B., Cruze, J. A., McCombie, W. R., Parker, K. A., Nelles, L., et al. (1988). Journal of Basic Microbiology, 28, 265–278.

    Article  CAS  Google Scholar 

  28. Tuite, M. F., Clare, J. J., & Romanos, M. A. (1999). In S. J. Higgins & B. D. Hames (Eds.), Protein expression, a practical approach. Oxford University Press.

  29. Laroche, Y., Storme, V., De Meutter, J., Messens, J., & Lauwereys, M. (1994). Biotechnology (NY), 12, 1119–1124.

    Article  CAS  Google Scholar 

  30. Wright, A., & Morrison, S. L. (1997). Trends in Biotechnology, 15, 26–32.

    Article  CAS  Google Scholar 

  31. Jenkins, N., Parekh, R. B., & James, D. C. (1996). Nature Biotechnology, 14, 975–981.

    Article  CAS  Google Scholar 

  32. Gemmill, T. R., & Trimble, R. B. (1999). Biochimica et Biophysica Acta, 1426, 227–237.

    CAS  Google Scholar 

  33. Grinna, L., & Tschopp, J. F. (1989). Yeast, 5, 107–115.

    Article  CAS  Google Scholar 

  34. Trimble, R. B., Atkinson, P. H., Tschopp, J. F., Townsend, R. R., & Maley, F. (1991). Journal of Biological Chemistry, 266, 22807–22817.

    CAS  Google Scholar 

  35. Tull, D., Gottschalk, T. E., Svendsen, I., Kramhoft, B., Phillipson, B. A., Bisgard-Frantzen, H., et al. (2001). Protein Expression and Purification, 21, 13–23.

    Article  CAS  Google Scholar 

  36. Sevo, M., Degrassi, G., Skoko, N., Venturi, V., & Ljubijankic, G. (2002). FEM Yeast Research, 4, 271–277.

    Article  Google Scholar 

  37. Callewaert, N., Laroy, W., Cadirgi, H., Geysens, S., Saelens, X., MinJou, W., et al. (2001). FEBS Letters, 503, 173–178.

    Article  CAS  Google Scholar 

  38. Choi, B. K., Bobrowicz, P., Davidson, R. C., Hamilton, S. R., Kung, D. H., Li, H., et al. (2003). Proceedings of the National Academy of Sciences of the United States of America, 100, 5022–5027.

    Article  CAS  Google Scholar 

  39. Kang, H. A., Choi, E. S., Hong, W. K., Kim, J. Y., Ko, S. M., Sohn, J. H., et al. (2000). Applied Microbiology and Biotechnology, 53, 575–582.

    Article  CAS  Google Scholar 

  40. Chen, D. C., Wang, B. D., Chou, P. Y., & Kuo, T. T. (2000). Yeast, 16, 207–217.

    Article  CAS  Google Scholar 

  41. Sreekrishna, K., Brankamp, R. G., Kropp, K. E., Blankenship, D. T., Tsay, J. T., Smith, P. L., et al. (1997). Gene, 190, 55–62.

    Article  CAS  Google Scholar 

  42. Shi, X., Karkut, T., Chamankhah, M., Alting-Mees, M., Hemmingsen, S. M., & Hegedus, D. (2003). Protein Expression and Purification, 28, 321–330.

    Article  CAS  Google Scholar 

  43. Murasugi, A., Asami, Y., & Mera-Kikuchi, Y. (2001). Protein Expression and Purification, 23, 282–288.

    Article  CAS  Google Scholar 

  44. O’Callaghan, J., O’Brien, M. M., McClean, K., & Dobson, A. D. (2002). Journal of Industrial Microbiology and Biotechnology, 29, 55–59.

    Article  CAS  Google Scholar 

  45. Wang, S. H., Yang, T. S., Lin, S. M., Tsai, M. S., Wu, S. C., & Mao, S. J. (2002). Protein Expression and Purification, 25, 41–49.

    Article  CAS  Google Scholar 

  46. Issaly, N., Solsona, O., Joudrier, P., Gautier, M. F., Moulin, G., & Boze, H. J. (2001). Applied Microbiology, 90, 397–406.

    Article  CAS  Google Scholar 

  47. Tsujikawa, M., Okabayashi, K., Morita, M., & Tanabe, T. (1996). Yeast, 12, 541–553.

    Article  CAS  Google Scholar 

  48. Schein, C. H., & Noteborn, M. N. H. (1988). Biotechnology (NY), 6, 291–294.

    Article  CAS  Google Scholar 

  49. Lee, S. C., Choi, Y. C., & Yu, M. H. (1990). European Journal of Biochemistry, 187, 417–424.

    Article  CAS  Google Scholar 

  50. Broeze, R. J., Solomon, C. J., & Pope, D. H. (1978). Journal of Bacteriology, 34, 861–874.

    Google Scholar 

  51. Han, K. G., Lee, S. S., & Kang, C. (1999). Protein Expression and Purification, 16, 103–108.

    Article  CAS  Google Scholar 

  52. Makrides, S. C. (1996). Microbiological Reviews, 60, 512–538.

    CAS  Google Scholar 

  53. Curvers, S., Brixius, P., Klauser, T., Thommes, J., Weuster-Botz, D., Takors, R., et al. (2001). Biotechnology Progress, 17, 495–502.

    Article  CAS  Google Scholar 

  54. Soden, D. M., O’Callaghan, J., & Dobson, A. D. (2002). Microbiology, 148, 4003–4014.

    CAS  Google Scholar 

  55. Jahic, M., Gustavsson, M., Jansen, A. K., Martinelle, M., & Enfors, S. O. (2003). Journal of Biotechnology, 102, 45–53.

    Article  CAS  Google Scholar 

  56. Murasugi, A., & Tohma-Aiba, Y. (2003). Protein Expression and Purification, 27, 244–252.

    Article  CAS  Google Scholar 

  57. Koganesawa, N., Aizawa, T., Shimojo, H., Miura, K., Ohnishi, A., Demura, M., et al. (2002). Protein Expression and Purification, 25, 416–425.

    Article  CAS  Google Scholar 

  58. Sarramegna, V., Demange, P., Milon, A., & Talmont, F. (2002). Protein Expression and Purification, 24, 212–220.

    Article  CAS  Google Scholar 

  59. Stratton, J., Chiruvolu, V., & Meagher, M. (1998). Methods in Molecular Biology, 103, 107–120.

    CAS  Google Scholar 

  60. Minning, S., Serrano, A., Ferrer, P., Sola, C., Schmid, R. D., & Valero, F. (2001). Journal of Biotechnology, 86, 59–70.

    Article  CAS  Google Scholar 

  61. Loewen, M. C., Liu, X., Davies, P. L., & Daugulis, A. J. (1997). Journal of Microbiology and Biotechnology, 48, 480–486.

    CAS  Google Scholar 

  62. Zhang, W., Hywood Potter, K. J., Plantz, B. A., Schlegel, V. L., Smith, L. A., & Meagher, M. M. (2003). Journal of Industrial Microbiology & Biotechnology, 30, 210–215.

    CAS  Google Scholar 

  63. Chung, J. D. (2000). Biotechnology & Bioengineering, 68, 298–307.

    Article  CAS  Google Scholar 

  64. Zhang, W., Smith, L. A., Plantz, B. A., Schlegel, V. L., & Meagher, M. M. (2002). Biotechnology Progress, 18, 1392–1399.

    Article  CAS  Google Scholar 

  65. d’Anjou, M. C., & Daugulis, A. J. (2001). Biotechnology & Bioengineering, 72, 1–11.

    Article  CAS  Google Scholar 

  66. Sinha, J., Plantz, B. A., Zhang, W., Gouthro, M., Schlegel, V., Liu, C. P., et al. (2003). Biotechnology Progress, 19, 794–802.

    Article  CAS  Google Scholar 

  67. Trinh, L. B., Phue, J. N., & Shiloach, J. (2003). Biotechnology & Bioengineering, 82, 438–444.

    Article  CAS  Google Scholar 

  68. Li, Z., Xiong, F., Lin, Q., d´Anjou, M., Daugulis, A., Yang, D. S. C., et al. (2001). Protein Expression and Purification, 21, 438–445.

    Article  CAS  Google Scholar 

  69. Oobatake, M., Yamasaki, T., Simmer, J. P., & Renugopalakrishnan, V. (2006). Proteins, 62, 461–469.

    Article  CAS  Google Scholar 

  70. Renugopalakrishnan, V., Strzelczyk, A., Li, P. Z., Mokhnatyuk, A. A., Gursahani, S. H., Nagaraju, M., et al. (2003). International Journal of Quantum Chemistry, 95, 625–631.

    Article  CAS  Google Scholar 

  71. Pearson, R., & Kemp, B. (1991). Methods in Enzymology, 200, 62–81.

    Article  CAS  Google Scholar 

  72. Takagi, T., Suzuki, M., Baba, T., Minegishi, K., & Sasaki, S. (1984). Biochemical and Biophysical Research Communications, 121, 592–597.

    Article  CAS  Google Scholar 

  73. Waterham, H. R., Titorenko, V. I., Haima, P., Cregg, J. M., Harder, W., & Veenhuis, M. (1994). Journal of Cell Biology, 127, 737–749.

    Article  CAS  Google Scholar 

  74. Faber, K. N., Haima, P., Gietl, C., Harder, W., Ab, G., & Veenhuis, M. (1994). Proceedings of the National Academy of Sciences of the United States of America, 91, 12985–12989.

    Article  CAS  Google Scholar 

  75. De Hoop, M. J., & Geert, A. B. (1992). Biochemical Journal, 286, 657–669.

    Google Scholar 

  76. Weiss, H. M., Haase, W., Michel, H., & Reilander, H. (1995). FEBS Letters, 377, 451–456.

    Article  CAS  Google Scholar 

  77. Talmont, F., Sidobre, S., Demange, P., Milon, A., & Emorine, L. J. (1996). FEBS Letters, 394, 268–272.

    Article  CAS  Google Scholar 

  78. McGrew, J. T., Leiske, D., Dell, B., Klinke, R., Krasts, D., Wee, S. F., et al. (1997). Gene, 187, 193–200.

    Article  CAS  Google Scholar 

  79. Wu, S.-H., & Lagarias, J. C. (1996). Proceedings of the National Academy of Sciences of the United States of America, 93, 8989–8994.

    Article  CAS  Google Scholar 

  80. Betancourt, L. H., Garcia, R., Gonzales, J., Montesino, R., Quintero, O., Takao, T., et al. (2001). FEMS Yeast Research, 1, 151–160.

  81. Boraston, A. B., Sandercock, L. E., Warren, R. A., Kilburn, D. G. (2003). Journal of Molecular Microbiology and Biotechnology, 5, 29-36.

    Article  CAS  Google Scholar 

  82. Reddy, S. T., Dahms, N. M. (2002). Protein Expression and Purification, 26, 290-300.

    Article  CAS  Google Scholar 

  83. Hirose, M., Kameyama, S., Ohi, H. (2002). Yeast, 19, 1191-1202.

    Article  CAS  Google Scholar 

  84. Jiang, S. T., Chen, G. H., Tang, S. J., Chen, C. S. (2002). Journal of Agricultural and Food Chemistry, 50, 5313-5317.

    Article  CAS  Google Scholar 

  85. Watmann, T., Stephan, U. W., Bube, I., Boer, E., Melzer, M., Manteuffel, R., et al. (2002). Yeast, 19, 849-862.

    Article  CAS  Google Scholar 

  86. Saito, A., Usui, M., Song, Y., Azakami, H., Kato, A. (2002). Journal of Biochemistry (Tokyo), 132, 77-82.

    CAS  Google Scholar 

  87. Rotticci-Mulder, J. C., Gustavsson, M., Holmquist, M., Hult, K., Martinelle, M. (2001). Protein Expression and Purification, 21, 386-392.

    Article  CAS  Google Scholar 

  88. Letourneur, O., Gervasi, G., Gaia, S., Pages, J., Watelet, B., Jolivet, M. (2001). Biotechnology and Applied Biochemistry, 33, 35-45.

    Article  CAS  Google Scholar 

  89. Best, E. A., Stedman, K. E., Bozic, C. M., Hunter, S. W., Vailes, L., Chapman, M. D. (2000). Protein Expression and Purification, 20, 462-471.

    Article  CAS  Google Scholar 

  90. Sagt, C. M., Kleizen, B., Verwaal, R., de Jong, M. D., Muller, W. H., Smits, A. (2000). Applied and Environmental Microbiology, 66, 4940-4944.

    Article  CAS  Google Scholar 

  91. Rodriguez, E., Wood, Z. A., Karplus, P. A., Lei, X. G. (2000). Archives of Biochemistry and Biophysics, 382, 105-112.

    Article  CAS  Google Scholar 

  92. Boer, H., Teeri, T. T., Koivula, A. (2000). Biotechnology and Bioengineering, 69, 486-494.

    Article  CAS  Google Scholar 

  93. Montesino, R., Nimtz, M., Quintero, O., Garcia, R., Falcon, V., Cremata, J. A. (1999). Glycobiology, 9, 1037-1043.

    Article  CAS  Google Scholar 

  94. Wang, M., Lee, L. S., Nepomich, A., Yang, J. D., Conover, C., Whitlow, M. et al. (1998). Protein Engineering, 11, 1277-1283.

    Google Scholar 

  95. You, Y. H., Hefta, L. J., Yazaki, P. J., Wu, A. M., Shively, J. E. (1998). Anticancer Research, 18, 3193-3201.

    Google Scholar 

  96. Van den Steen, P., Rudd, P. M., Proost, P., Martens, E., Paemen, L., Kuster, B. et al. (1998). Biochimica et Biophysica Acta, 1425, 587-598.

    Google Scholar 

  97. Richard, F, Robert, P, Remy, JJ, Martinat, N, Bidart, JM, Salesse, R., et al. (1998). Biochemical and Biophysical Research Communications, 245, 847-852.

    Article  CAS  Google Scholar 

  98. Zhu, A., Wang, Z. K., Beavis, R. (1998). Archives of Biochemistry and Biophysics, 352, 1-8.

    Article  CAS  Google Scholar 

  99. Heimo, H., Palmu, K., Suominen, I. (1998). Protein Expression and Purification, 12, 85-92.

    Article  CAS  Google Scholar 

  100. Martinet, W., Saelens, X., Deroo, T., Neirynck, S., Contreras, R., Min Jou, W., et al. (1997). European Journal of Biochemistry, 247, 332-338.

    Article  CAS  Google Scholar 

  101. Abdulaev, N. G., Popp, M. P., Smith, W. C., Ridge, K. D. (1997). Protein Expression and Purification, 10, 61-69.

    Article  Google Scholar 

  102. Williams, T. A., Michaud, A., Houard, X., Chauvet, M. T., Soubrier, F., Corvol, P. (1996). Biochemical Journal, 318, 125-131.

    CAS  Google Scholar 

  103. Hong, F., Meinander, N. Q., Jonsson, L. J. (2002). Biotechnology Bioengineering, 79, 438-449.

  104. Whittaker, M. M., Whittaker, J. W. (2000). Protein Expression and Purification, 20, 105-111.

    Google Scholar 

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Acknowledgments

We thank Dr. Geoff Lin-Cereghino (Department of Biology, University of the Pacific) for helpful comments on the manuscript, and Mr. Neal Johnson (School of Dentistry, University of the Pacific) for preparing the figures. The research described here was supported by US AFOSR, NSF, the Wallace Coulter Foundation, and Harvard Medical School.

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Correspondence to V. Renugopalakrishnan.

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Li, P., Anumanthan, A., Gao, XG. et al. Expression of Recombinant Proteins in Pichia Pastoris . Appl Biochem Biotechnol 142, 105–124 (2007). https://doi.org/10.1007/s12010-007-0003-x

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