Abstract
The photosynthetic and physiological performances of Oryza sativa L. (rice) were evaluated in organic and conventional rice–rice agroecosystems for 120 days after transplantation by measuring net photosynthesis (P N), transpiration (E), stomatal conductance (g s), intercellular CO2 concentration (C i), chlorophyll content (SPAD) and JIP fluorescence rise. The soil health was measured as soil bacterial and fungi density and activities of soil microbial enzymes (amylase, invertase, cellulase, protease, alkaline phosphatase and dehydrogenase). The conventionally managed fields showed lower microbial density and activity than of organic fields especially after 60 days of transplantation. The crop grown in the conventional fields has significantly low level of P N and chlorophyll, but E, g s and C i did not differ significantly till 105 days after transplantation. The JIP rise was low in conventional fields than in organic fields during 90–120 days. The efficiency and plant performance parameters (φP 0, Ψ 0, φE 0, PIφ, PI Ψ , PIABS, and PItotal) showed a rapid rate of decrease in the conventional than of organic fields. Significant positive correlation could be established between the performance and soil microbial activities, whereas the stress indicating fluorescence parameters (V J, M 0, φD 0, DI0/RC) showed significant negative correlation with the soil parameters in both the farming systems. The result showed that JIP analysis can be used as an early indicator of soil fertility and plant performance.
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Abbreviations
- ψ 0 :
-
Rate of trapped exciton movement beyond Q A
- φD 0 :
-
Quantum yield of energy dissipation,
- φE 0 :
-
Quantum yield of electron transport
- φP 0 :
-
Quantum yield of primary photochemistry
- ABS/RC:
-
Effective antenna size of active RC
- Chl:
-
Chlorophyll content
- C i :
-
Intercellular CO2 concentration
- DI0/RC:
-
Energy dissipation flux per active RC
- E :
-
Transpiration
- ET0/RC:
-
Electron transport flux per active RC
- F v :
-
Variable fluorescence
- g s :
-
Stomatal conductance
- M 0 :
-
Net rate of PS II closure
- PI ψ :
-
Performance index of exciton movement beyond Q A
- PI φ :
-
Performance index of primary photochemistry
- PIABS :
-
Performance index on absorption basis
- PIRC :
-
Performance index of absorption per RC
- PItotal :
-
Performance index of reduction of end electron acceptor of PS I
- P N :
-
Net photosynthesis
- PS II:
-
Photosystem II
- RC:
-
Reaction Center
- TR0/RC:
-
Trapped energy flux per active RC
- V J :
-
2 ms relative variable fluorescence
References
Albert KR, Mikkelsena TN, Michelsen A, Ro-Poulsen H, van der Linden L (2011) Interactive effects of drought, elevated CO2 and warming on photosynthetic capacity and photosystem performance in temperate heath plants. J Plant Physiol 168:1550–1561
Araujo ASF, Santos VB, Monteiro RTR (2008) Responses of soil microbial biomass and activity for practices of organic and conventional farming systems in Piaui state. Brazil Eur J Soil Biol 44:225–230
Böhme L, Langer U, Böhme F (2005) Microbial biomass, enzyme activities and microbial community structure in two European long-term field experiments. Agric Ecosyst Environ 109:141–152
Bürling K, Hunsche M, Noga G (2011) Use of blue–green and chlorophyll fluorescence measurements for differentiation between nitrogen deficiency and pathogen infection in winter wheat. J Plant Physiol 168:1641–1648
Casida LE Jr, Klein DA, Santoro T (1964) Soil dehydrogenase activity. Soil Sci 98:371–376
Cha-Um S, Supiabulwattana K, Kirdmanee C (2009) Comparative effects of salt stress and extreme pH stress combined on glycine betaine accumulation, photosynthetic abilities and growth characters of two rice genotypes. Rice Sci 16:274–282
Chhotaray D, Mohapatra PK, Mishra CSK (2010) Macronutrient availability and microbial population dynamics in soils under organic and conventional farming of legume crop. Bioscan 3:643–650
Datta NP, Khana MS, Saini TR (1962) A rapid colorimetric procedure for the determination of the organic carbon in soil. J Indian Soc Soil Sci 10:67–74
Flexas J, Ribas-Carbo M, Bota J, Galmes J, Henkle M, Martinez-Canellas S, Medrano H (2006) Decreased Rubisco activity during water stress is not induced by decreased relative water content but related to conditions of low stomatal conductance and chloroplast CO2 concentration. New Phytol 172:73–82
Force L, Critchley C, Van Rensen JJS (2003) New fluorescence parameters for monitoring photosynthesis in plant: I. The effect of illumination on fluorescence parameters of the JIP test. Photosynth Res 90:1–19
Gajda A, Martyniuk S (2005) Microbial biomass C and N and activity of enzymes of soil under winter wheat grown in different crop management systems. Pol J Environ Stud 14:159–163
Ge T, Nie S, Wu J, Shen J, Xiao H, Tong C, Huang D, Hong Y, Iwasaki K (2011) Chemical properties, microbial biomass, and activity differ between soils of organic and conventional horticultural systems under greenhouse and open field management: a case study. J Soils Sediment 11:25–36
Grassi G, Magnani F (2005) Stomatal, mesophyll conductance and biochemical limitations to photosynthesis as affected by drought and leaf ontogeny in ash and oak trees. Plant Cell Environ 28:834–849
Huang H, Zhang S, Wu N, Luo L, Christie P (2009) Influence of Glomus etunicatum/Zea mays mycorrhiza on atrazine degradation, soil phosphatase and dehydrogenase activities and soil microbial community structure. Soil Biol Biochem 41:726–734
Jena S, Acharya S, Mohapatra PK (2012) Variation in effects of four OP insecticides on photosynthetic pigment fluorescence of Chlorella vulgaris Beij. Ecotoxicol Environ Saf 80:111–117
Johnson LF, Curl EA (1972) Methods for the research on ecology of soil borne plant pathogens. Burgess Publishing Co., Minneapolis
Krishnakumar S, Saravanan A, Natarajan SK, Veerabadran V, Mani S (2005) Microbial population and enzymatic activity as influenced by organic farming. Res J Agric Biol Sc 1(1):85–88
Krüger GHJ, Tsimilli-Michael M, Strasser RJ (1997) Light stress provoke plastic and elastic modifications in structure and function of photosystem II in camellia leaves. Physiol Plant 101:265–277
Kruskopf M, Flynn KJ (2006) Chlorophyll content and fluorescence response can not be used to gauge reliably phytoplankton biomass, nutrient status or growth rate. New Phytol 169:525–536
Kumar A, Guha A, Bimolata W, Reddy AR, Laha GS, Sundaram RM, Pandey MK, Ghazi IA (2013) Leaf gas exchange physiology in rice genotypes infected with bacterial blight: an attempt to link photosynthesis with disease severity and rice yield. Aust J Crop Sci 7(1):32–39
Lazar D (2003) Chlorophyll a fluorescence rise induced by high light illumination of dark adapted plant tissue studied by means of a model of photosystem II and considering photosystem II heterogeneity. J Theor Biol 220:469–503
Li X, Mu Y, Cheng Y, Liu X, Nian H (2013) Effects of intercropping sugarcane and soybean on growth, rhizosphere soil microbes, nitrogen and phosphorus availability. Acta Physiol Plant 35(4):1113–1119
Liu X-M, Li Q, Liang W-J, Jiang Y (2008) Distribution of soil enzyme activities and microbial biomass along a latitudinal gradient in farmlands of Songliao plain, North east China. Pedosphere 18:431–440
Liu J, Zhou G, Xu Z, Duan H, Li Y, Zhang D (2011) Photosynthesis acclimation, leaf nitrogen concentration, and growth of four tree species over 3 years in response to elevated carbon dioxide and nitrogen treatment in subtropical China. J Soils Sediment 11:1155–1164
Mäder P, Fleissbach A, Dubois D, Gunst L, Fried P, Naggli U (2002) Soil fertility and biodiversity in organic farming. Science 296:1694–1697
Makoi JHJR, Ndakidemi PA (2008) Selected soil enzymes: examples of their potential roles in the ecosystem. Afr J Biotechnol 7:181–191
Mauro RP, Occhipinti A, Longo AMG, Mauromicale G (2011) Effect of shading on chlorophyll content, chlorophyll fluorescence and photosynthesis in subterranean clover. J Agron Crop Sci 197:57–66
Mishra PC, Mohanty RK, Dash MC (1979) Enzyme activity in subtropical surface soils under pasture. Indian J Agric Chem 12:19–24
Mohapatra PK, Khillar R, Hansdah B, Mohanty RC (2010) Photosynthetic and fluorescence responses of Solanum melangena L. to field application of dimethoate. Ecotoxicol Environ Saf 73:78–83
Nayyar A, Hamel C, Lafond G, Gossen BD, Hanson K, Germida J (2009) Soil microbial quality associated with yield reduction in continuous-pea. Appl Soil Ecol 43:115–121
Qiu B, Zhang A, Zhou W, Wei J, Dong H, Liu Z (2004) Effect of potassium on the photosynthetic recovery of the terrestrial cyanobacterium Nostoc flagelliforme (Cyanophyceae) during rehydration. J Phycol 40:323–332
Santos CM, Verissimo V, Ferreira VM, Cavalcante PGS, Rolim EV, Endres L (2013) Seasonal variations of photosynthesis, gas exchange, quantum efficiency of photosystem II and biochemical responses of Jatropha curcas L. grown in semi-humid and semi-arid areas subject to water stress. Industr Crops Products 41:203–213
Speir TW, Ross DJ (1975) Effect of storage on the activities of protease, urease, phosphatase and sulphatase in three soils under pasture. N Z J Sci 18:231–237
Stirbet A, Govindjee (2011) On the relation between the Kautsky effect (chlorophyll a fluorescence induction) and photosystem II: basics and applications of the OJIP fluorescence transient. J Photochem Photobiol B: Biol 104:236–257
Strasser BJ (1997) Donor side capacity of photosystem II probed by chlorophyll a fluorescence transients. Photosynth Res 52:147–155
Strasser RJ, Stirbet AD (1998) Heterogeneity of photosystem II probed by the numerically simulated chlorophyll a fluorescence rise (O-J-I-P). Math Comput Sim 48:3–9
Strasser RJ, Srivastava A, Govindjee (1995) Polyphasic chlorophyll a fluorescence transient in plants and cyanobacteria. Photochem Photobiol 61:32–42
Strasser RJ, Tsimilli-Michael M, Srivastava A (2004) Analysis of chlorophyll a fluorescence transient. In: Papageorgiou GC, Govinajee (eds) Chlorophyll a fluorescence––a signature of photosynthesis. Kluwer, Dordrecht, pp 321–362
Tabatabai MA (1994) Soil enzymes. In: Weaver RW, Angle JS, Bottomley PS (eds) Methods of soil analysis 2. Microbiological and biochemical properties, SSSA Book Series no. 5. Soil Science Society of America, Wisconsin, pp 775–833
Tsimilli-Michael M, Eggenberg P, Biro B, Köres-Pechy K, Vörös I, Strasser RJ (2000) Synergistic and antagonistic effects of arbuscular mycorrhizal fungi and Azospirillum and Rhizobium nitrogen fixers on the photosynthetic activity of alfalfa, probed by a chlorophyll a polyphasic fluorescence transient O-J-I-P. Appl Soil Ecol 15:169–182
Vernay P, Gauthier-Moussard C, Jean L, Bordas F, Faure O, Ledoigt G, Hitmi A (2008) Effect of chromium species on phytochemical and physiological parameters in Datura innoxia. Chemosphere 72:763–771
Wu FZ, Bao WK, Li FL, Wu N (2008) Effect of water stress and nitrogen supply on leaf gas exchange and fluorescence parameters of Sophora davidii seedlings. Photosynthetica 46:40–48
Yuan C-L, Mou C-X, Wu W-L, Guo Y-B (2011) Effect of different fertilization treatments on indole-3-acetic acid producing bacteria in soil. J Soil Sediments 11:322–329
Zabihi HR, Savaghebi GR, Khavazi K, Ganjali A, Miransari M (2013) Pseudomonas bacteria and phosphorus fertilization, affecting wheat (Triticum aestivum L.) yield and P uptake under greenhouse and field conditions. Acta Physiol Plant 33(1):145–152
Acknowledgments
The work was funded by University Grants Commission (UGC), New Delhi, Under the Special Assistance Programme (SAP) through Departmental Research Support (DRS) to P. G. Department of Botany, Utkal University, Bhubaneswar. The authors thank the authorities of Utkal University and Orissa University of Agriculture and Technology, Bhubaneswar for providing necessary laboratory and field facility to carry out this research.
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Chhotaray, D., Chandrakala, Y., Mishra, C.S.K. et al. Farm practices influence the photosynthetic performance and plant efficiency of Oryza sativa L.. Acta Physiol Plant 36, 1501–1511 (2014). https://doi.org/10.1007/s11738-014-1527-7
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DOI: https://doi.org/10.1007/s11738-014-1527-7