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Diversity of fungal communities in saline and acidic soils in the Soos National Natural Reserve, Czech Republic

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Abstract

During 2003–2005, the diversity of culturable filamentous soil microfungi in saline and acidic soils of the Soos National Natural Reserve (Czech Republic) was studied. Altogether, 28 soil samples were collected from four sampling sites and were processed by various approaches. In total, 92 fungal taxa were identified using classical and molecular markers. Several detected species were known from similar substrata worldwide; however, the overall fungal spectrum was distinct, as shown by comparison to similar studies. All methodological approaches increased the observed fungal diversity. The different fungal communities observed on the four sampling sites were influenced by the complex effects of environmental factors. The growth response of selected strains to different salinities and pH values was determined. The results of the growth tests showed high adaptability of all tested species to the extreme conditions of the studied substrate. Two acidophilic species (Acidomyces acidophilus, Sporothrix sp.) were isolated.

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References

  • Amaral Zettler LA, Gomez F, Zettler E, Keenan BG, Amils R, Sogin ML (2002) Eukaryotic diversity in Spain’s river of fire. Nature 417:137

    Article  CAS  PubMed  Google Scholar 

  • Anastasiou CJ (1963) Fungi from salt lakes II. Ascomycetes and fungi imperfecti from the Salton sea. Nova Hedwigia 6:243–276

    Google Scholar 

  • Baker BJ, Banfield JF (2003) Microbial communities in acid mine drainage. Fems Microbiol Ecol 44:139–152

    Article  CAS  PubMed  Google Scholar 

  • Baker BJ, Lutz MA, Dawson SC, Bond PL, Banfield JF (2004) Metabolically active eukaryotic communities in extremely acidic mine drainage. Appl Environ Microbiol 70:6264–6271

    Article  CAS  PubMed  Google Scholar 

  • Bills GM, Christensen M, Powell M, Thorn G (2004) Saprobic soil fungi. In: Mueller GM, Bills GF, Foster MS (eds) Biodiversity of fungi, inventory and monitoring methods. Elsevier/Academic, London, pp 271–302

  • Bray JR, Curtis JT (1957) An ordination of upland forest communities of southern Wisconsin. Ecol Monogr 27:325–349

    Article  Google Scholar 

  • Brož K (1998) Vývoj ochrany Národní přírodní rezervace Soos. In: Lederer F, Chocholoušková Z (eds) Flora a vegetace minerálních pramenů a rašelinišť NPR Soos, Plzeň, pp 1–2

  • Buchalo AS, Nevo E, Wasser SP, Oren A, Molitoris HP (1998) Fungal life in the extremely hypersaline water of the Dead Sea: first records. Proc R Soc Lond B 265:1461–1465

    Article  CAS  Google Scholar 

  • Buchalo AS, Nevo E, Wasser SP, Volz PA (2000) Newly discovered halophilic fungi in the Dead Sea (Israel). In: Seckbach J (ed) Journey to diverse microbial worlds. Kluwer, Dordrecht, pp 239–252

    Google Scholar 

  • Campbell J, Volkmann-Kohlmeyer B, Grafenhan T, Kohlmeyer J (2005) A re-evaluation of Lulworthiales: relationships based on 18 S and 28 S rDNA. Mycol Res 109:556–568

    Article  CAS  PubMed  Google Scholar 

  • Cantrell SA, Casillas-Martínez L, Molina M (2006) Characterization of fungi from hypersaline environments of solar salterns using morphological and molecular techniques. Mycol Res 110:962–970

    Article  CAS  PubMed  Google Scholar 

  • Cavicchioli R, Torsten T (2000) Extremophiles. In: Lederberg J (ed) Encyclopedia of microbiology, San Diego, pp 317–337

  • Chocholoušková Z, Vaněčková I (1998) Flóra a vegetace cévnatých rostlin NPR Soos a vybraných lokalit Slavkovského lesa. (Flora and vegetation of vascular plants in National Natural Reserve Soos) In: Lederer F, Chocholoušková Z (eds) Flora a vegetace minerálních pramenů a rašelinišť NPR Soos, Plzeň, pp 68–107

  • Colwell RK (2006) ESTIMATES, Version 8.0: statistical estimation of species richness and shared species from samples (Software and User’s Guide). Freeware for Windows and Mac OS. http://viceroy.eeb.uconn.edu/EstimateS

  • Collado J, Platas G, Paulus B, Bills GF (2007) High-throughput culturing of fungi from plant litter by a dilution-to-extinction technique. Fems Microbiol Ecol 60:521–533

    Article  CAS  PubMed  Google Scholar 

  • Cooke WB (1976) Fungi in and near streams carrying acid mine-drainage. Ohio J Sci 76:231–240

    Google Scholar 

  • Fassatiová O (1986) Moulds and filamentous fungi in technical microbiology. Elsevier, New York

    Google Scholar 

  • Fell JW, Scorzetti G, Connell L, Craig S (2006) Biodiversity of micro-eukaryotes in Antarctic Dry Valley soils with < 5% soil moisture. Soil Biol Biochem 38:3107–3119

    Article  CAS  Google Scholar 

  • Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB (2007) Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl Environ Microbiol 73:7059–7066

    Article  CAS  PubMed  Google Scholar 

  • Gadd GM (ed) (2001) Fungi in bioremediation. Cambridge University Press

  • Gams W (1992) The analysis of communities of saprophytic microfungi with special reference to soil fungi. In: Winterhoff W (ed) Fungi in vegetation science. Kluwer, Amsterdam, pp 183–223

    Google Scholar 

  • Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2:113–118

    Article  CAS  PubMed  Google Scholar 

  • Glass NL, Donaldson G (1995) Development of primer sets designed for use with the PCR to amplify conserved from filamentous ascomycetes. Appl Environ Microbiol 61:1323–1330

    CAS  PubMed  Google Scholar 

  • Grishkan I, Nevo E, Wasser SP (2003) Soil micromycete diversity in the hypersaline Dead Sea coastal area, Israel. Mycol Prog 2:19–28

    Article  Google Scholar 

  • Guiraud P, Steiman R, Seigle-Murandi F, Sage L (1995) Mycoflora of soil around the Dead Sea. II - Deuteromycetes (except Aspergillus and Penicillium). Syst Appl Microbiol 18:318–322

    Google Scholar 

  • Gunde-Cimerman N, Zalar P, de Hoog GS, Plemenitaš A (2000) Hypersaline waters in salterns - natural ecological niches for halophilic black yeasts. Fems Microbiol Ecol 32:235–240

    CAS  Google Scholar 

  • Gunde-Cimerman N, Frisvad JC, Zalar P, Plemenitaš A (2005) Halotolerant and halophilic fungi. In: Deshmukh SK, Rai MK (eds) Biodiversity of fungi. Their role in human life. Science Publishers, New Hampshire, pp 69–127

    Google Scholar 

  • Hájek M, Vízdal P (1998) Prostorová hydrologická struktura NPR Soos. (Spatial hydrological structure of National Natural Reserve Soos) In: Lederer F, Chocholoušková Z (eds) Flora a vegetace minerálních pramenů a rašelinišť NPR Soos, Plzeň, pp 3–13

  • Hammer O, Harper DAT, Ryan PD (2001) PAST: Paleontological statistics software package for education and data analysis. Palaeontol Electron 4

  • Hawksworth DL (1991) The fungal dimension of biodiversity: magnitude, significance, and conservation. Mycol Res 95:641–655

    Article  Google Scholar 

  • Hawksworth DL (2004) Fungal diversity and its implications for genetic resource collections. Stud Mycol 50:9–18

    Google Scholar 

  • Hendrarto BI, Dickinson HC (1984) Soil and root micro-organisms in four salt marsh communities. Trans Br Mycol Soc 83:615–620

    Article  Google Scholar 

  • Hölker U, Bend J, Pracht R, Tetsch L, Müller T, Höfer M, SGd H (2004) Hortaea acidophila, a new acid-tolerant black yeast from lignite. Ant van Leeuw 86:287–294

    Article  CAS  Google Scholar 

  • Hulcr J, Kolařík M, Kirkendal LR (2007) A new record of fungus-beetle symbiosis in Scolytodes bark beetles (Scolytinae, Curculionidae, Coleoptera). Symbiosis 43

  • Joseph JM (1953) Microbiological study of acid mine waters: preliminary report. Ohio J Sci 53:123–127

    Google Scholar 

  • Kolařík M, Kubátová A, Pažoutová S, Šrůtka P (2004) Morphological and molecular characterization of Geosmithia putterillii, G. pallida comb. nov. and G. flava sp. nov., associated with subcorticolous insects. Mycol Res 108:1053–1069

    Article  PubMed  Google Scholar 

  • Kubátová A, Prášil K, Váňová M (2002) Diversity of soil microscopic fungi on abandoned industrial deposits. Cryptogam, Mycol 23:205–219

    Google Scholar 

  • Lesaulnier C, Papamichail D, McCorkle S, Ollivier B, Skiena S, Taghavi S, Zak D, van der Lelie D (2008) Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen. Environ Microbiol 10:926–941

    Article  CAS  PubMed  Google Scholar 

  • López-Archilla AI, Amils R (1999) A comparative ecological study of two acidic rivers in southwestern Spain. Microb Ecol 38:146–156

    Article  PubMed  Google Scholar 

  • López-Archilla AI, González AE, Terrón MC, Amils R (2004) Ecological study of the fungal populations of the acidic Tinto River in southwestern Spain. Can J Microbiol 50:923–934

    Article  PubMed  Google Scholar 

  • Magan N (1997) Fungi in extreme environments. In: Wicklow DT, Soderstrom BE (eds) Environmental and microbial relationships. The Mycota IV. Springer, Berlin, pp 99–113

    Google Scholar 

  • Moubasher AH, Abdel-Hafez SII, Bagy MMK, Abdel-Satar MA (1990) Halophilic and halotolerant fungi in cultivated dessert and salt marsh soils from Egypt. Acta Mycol 26:65–81

    Google Scholar 

  • O’Donnell K (1993) Fusarium and its near relatives. In: Reynolds DR, Taylor JW (eds) The fungal holomorph: mitotic, meiotic, and pleomorphic speciation in fungal systematics. CAB International, Wallingford, pp 225–236

    Google Scholar 

  • Pugh GJF (1962) Studies on fungi in coastal soils II. Fungal ecology in developing salt marsh. Trans Br Mycol Soc 45:560–566

    Article  Google Scholar 

  • Redman RS, Litvintseva A, Sheehan KB, Henson JM, Rodriguez RJ (1999) Fungi from geothermal soils in Yellowstone National Park. Appl Environ Microbiol 65:5193–5197

    CAS  PubMed  Google Scholar 

  • Satake K, Saijo Y (1974) Carbon dioxide content and metabolic activity of microorganisms in some acid lakes in Japan. Limnol Oceanogr 19:331–338

    CAS  Google Scholar 

  • Schmit JP, Mueller GM (2007) An estimate of the lower limit of global fungal diversity. Biodivers Conserv 16:99–111

    Article  Google Scholar 

  • Selbmann L, GSd H, Zucconi L, Isola D, Ruisi S, Gerrits van den Ende AHG, Ruibal C, De Leo F, Urzì C, Onofri S (2008) Drought meets acid: three new genera in a dothidealean clade of extremotolerant fungi. Stud Mycol 61:1–20

    Article  CAS  PubMed  Google Scholar 

  • Starkey RL, Waksman SA (1943) Fungi tolerant to extreme acidity and high concentrations of copper sulfate. J Bacteriol 45:509–519

    CAS  PubMed  Google Scholar 

  • Steiman R, Guiraud P, Sage L, Seigle-Murandi F, Lafond J-L (1995) Mycoflora of soil around the Dead Sea. I - Ascomycetes (including Aspergillus and Penicillium), Basidiomycetes, Zygomycetes. Syst Appl Microbiol 18:310–317

    Google Scholar 

  • Steiman R, Ford L, Ducros V, Lafond J, Guiraud P (2004) First survey of fungi in hypersaline soil and water of Mono Lake area (California). Ant van Leeuw 85:69–83

    Article  CAS  Google Scholar 

  • Stierle AA, Stierle DB, Kelly K (2006) Berkelic Acid, a novel spiroketal with selective anticancer activity from an acid mine waste fungal extremophile. J Org Chem 71:5357–5360

    Article  CAS  PubMed  Google Scholar 

  • Stolk AM, Samson RA (1972) The genus Talaromyces. Stud Mycol 2:1–65

    Google Scholar 

  • Suryanarayanan TS, Hawksworth DL (2005) Fungi from little-explored and extreme habitats. In: Deshmukh SK, Rai MK (eds) Biodiversity of fungi. Their role in human life. Science Publishers, New Hampshire, pp 33–48

    Google Scholar 

  • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599

    Article  CAS  PubMed  Google Scholar 

  • Ter Braak CJF, Šmilauer P (1998) CANOCO reference manual and user’s guide to Canoco for Windows. Ithaca, USA

    Google Scholar 

  • White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR Protocols: A guide to methods and applications, New York, pp. 315–322

  • Zak JC, Wildman HG (2004) Fungi in stressful environments. In: Mueller GM, Bills GF, Foster MS (ed) Biodiversity of fungi, inventory and monitoring methods. Elsevier/Academic, London, pp. 303–315

  • Zalar P, de Hoog GS, Gunde-Cimerman N (1999) Ecology of halotolerant dothideous black yeasts. Stud Mycol 43:38–48

    Google Scholar 

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Acknowledgements

This work was supported by the Grant Agency of the Charles University (project No. 43-203345) and by the institutional project MSM 0021620828 of the Ministry of Education. We thank K. Brož and the Soos National Natural Reserve service for the facilitation of the sampling and for providing information; P. Škaloud for helpful comments on the statistical analysis; O. Rauch, A. Nováková and M. Albrechtová for the stimulating discussion; K. Prášil and M. Váňová for assistance in the determination of the fungi; and O. Koukol for reviewing the text.

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Correspondence to Martina Hujslová.

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Electronic supplementary material Table 5

The list of the isolated species with frequencies of their occurrence at an individual site and in a single sample (PDF 58 kb)

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Hujslová, M., Kubátová, A., Chudíčková, M. et al. Diversity of fungal communities in saline and acidic soils in the Soos National Natural Reserve, Czech Republic. Mycol Progress 9, 1–15 (2010). https://doi.org/10.1007/s11557-009-0611-7

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