Abstract
In 2005, researchers at the Leipzig Canopy Crane Research Facility collected living leaves of four temperate tree species at heights of between 15 and 33 m above the ground. Following surface sterilisation of the leaves, leaf-fragments were cultured on malt extract agar which allowed the growth of endophytic fungi into the surrounding medium. Isolated cultures were identified by morphology and sequence analysis of the D1/D2 region of the large subunit rDNA. Phylogenetic analysis established the taxonomic positions of the fungi. A total of 49 different taxa were identified, representing 20 families and ten orders. With the exception of one basidiomycetous yeast, all taxa belonged to filamentous ascomycetes. Species richness was highest on Tilia cordata and lowest on Quercus robur. Species-accumulation curves showed that the sampling effort was not sufficient to cover the majority of the likely species at the investigation site. Most endophytes proved to be ubiquitous within the canopy of the investigation site, but habitat preferences in terms of different tree species, different light regimes and season (sampling times) were obvious for some abundant endophytes. Apiognomonia errabunda and Aspergillus niger occurred predominantly on Q. robur, Diplodina acerina on Acer pseudoplatanus, one species of Phoma significantly prefered shaded leaves from the lower canopy layer whereas Sordaria fimicola prefered sun-exposed leaves from the upper tree crowns. Seasonal patterns were observed, for example, for A. errabunda, which was abundant in young leaves in the spring and almost completely absent in aged autumn-leaves, thus suggesting the accumulation of antifungal secondary plant metabolites during the growing season.
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Abliz P, Fukushima K, Takizawa K, Nishimura K (2004) Identification of pathogenic dematiaceous fungi and related taxa based on large subunit ribosomal DNA D1/D2 domain sequence analysis. FEMS Immunol Med Microbiol 40:41–49
Ahlholm JU, Helander M, Lehtimäki S, Wäli P, Saikkonen K (2002) Vertically transmitted fungal endophytes: different responses of host-parasite systems to environmental conditions. Oikos 99:173–183
Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: are troical leaves biodiversity hotspots? Ecology 88:541–549
Arnold AE, Maynard Z, Gilbert GS, Coley PD, Kursar TA (2000) Are tropical fungal endophytes hyperdivers? Ecol Lett 3:267–274
Arnold AE, Maynard Z, Gilbert GS (2001) Fungal endophytes in dicotyledonous neotropical trees: patterns of abundance and diversity. Mycol Res 105:1502–1507
Aylor DE (1986) A frameowork for examining inter-regional aerial transport of fungal spores. Agric For Meteorol 38:263–288
Bahnweg G, Heller W, Stich S, Knappe C, Betz G, Heerdt C, Kehr RD, Ernst D, Langebartels C, Nunn AJ, Rothenburger J, Schubert R, Wallis P, Müller-Starck G, Werner H, Matyssek R, Sandermann H (2005) Beech leaf colonization by the endophyte Apiognomonia errabunda dramatically depends on light exposure and climatic conditions. Plant Biol 7:659–669
Bills GF, Polishook JD (1990) Microfungi from Carpinus caroliniana. Can J Bot 69:1477–1482
Bohannan BJM, Hughes J (2003) New approaches to analyzing microbial diversity data. Curr Opin Microbiol 6:282–287
Bultman TL, Bell GD (2003) Interaction between fungal endophytes and environmental stressors influences plant resistance to insects. Oikos 103:182–190
Butin H, Kowalski T (1983a) The natural pruning of branches and their biological conditions 1. the fungal flora of beech (Fagus sylvatica). Eur J For Pathol 13:322–334
Butin H, Kowalski T (1983b) The natural pruning of branches and their biological conditions. II. the fungal flora of english oak (Quercus robur L.). Eur J For Pathol 13:428–439
Butin H, Kowalski T (1986) The natural pruning of branches and their biological conditions 3. The fungal flora of common maple, gray alder, silver hornbeam and common ash. Eur J For Pathol 16:129–138
Butin H, Kowalski T (1990) Natural pruning of branches and its biological conditions 5. The fungal flora of spruce, pine and larch. Eur J For Pathol 20:44–54
Cannon PF, Simmons CM (2002) Diversity and host preference of leaf endophytic fungi in the Iwokrama Forest Reserve, Guyana. Mycologia 94:210–220
Carroll G (1988) Fungal endophytes in stems and leaves: from latent pathogen to mutualistic symbiont. Ecology 69:2–9
Claydon N, Grove JF, Pople M (1985) Elm bark beetle boring and feeding deterrents from Phomopsis oblonga. Phytochemistry 24:937–943
Collado J, Platas G, Paulus B, Bills GF (2007) High-throughput culturing of fungi from plant litter by a dilution-to-extinction technique. FEMS Microbiol Immunol 60:521–533
Colwell RK (2006) ESTIMATES, Version 8.0: statistical estimation of species richness and shared species from samples (Software and User’s Guide). Freeware for Windows and Mac OS. http://viceroy.eeb.uconn.edu/EstimateS
Corpet F (1988) Multiple sequence alignment with hierarchial clustering. Nucleic Acids Res 16:10881–10890
Covelo F, Gallardo A (2001) Temporal variation in total leaf phenolics concentration of Quercus robur in forested and harvested stands in northwestern Spain. Can J Bot 79:1262–1269
Crous P, Kang J, Braun U (2001) A phylogenetic redefinition of anamorph genera in Mycosphaerella based on ITS rDNA sequence and morphology. Mycologia 93:1081–1101
Cubit JD (1974) Interactions of seasonally changing physical factors and grazing affecting high intertidal communities on a rocky shore. PhD thesis, University of Oregon, Eugene
Diamandis S (1981) Elytroderma torres-juanii Diamandis and Minter. A serious attack on Pinus brutia L. in Greece. In: Miller CS (ed) Current research on conifer needle diseases. Aberdeen University Press, Aberdeen pp 9–12
Dudt JF, Shure DJ (1994) The influence of light and nutrients on foliar phenolics and insect herbivory. Ecology 75:86–98
Faeth SH, Hammon KE (1996) Fungal endophytes and phytochemistry of oak foliage: determinants of oviposition preference of leafminers? Oecologia 108:728–736
Faeth SH, Hammon KE (1997) Fungal endophytes in oak trees: long term patterns of abundance and association with leafminers. Ecology 87:810–819
Fell J, Boekhout T, Fonseca A, Scorzetti G, Statzell-Tallman A (2000) Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int J Syst Evol Microbiol 50:1351–1371
Frankland JC (1998) Fungal succession-unravelling the unpredictable. Mycol Res 102:1–15
Fröhlich J, Hyde K (1999) Biodiversity of palm fungi in the tropics: are global fungal diversity estimates realistic? Biodivers Conserv 8:977–1004
Gamboa MA, Laureano S, Bayman P (2002) Measuring diversity of endophytic fungi in leaf fragments: does size matter? Mycopathologia 156:41–45
Gange AC (1996) Positive effects of endophyte infection on sycamore aphids. Oikos 75:500–510
Gotelli N, Colwell R (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol Lett 4:379–391
Guo LD, Hyde KD, Liew ECY (2000) Identification of endophytic fungi from Livistona chinensis based on morphology and rDNA sequences. New Phytol 147:617–630
Hall TA (1999) BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
Halmschlager E, Butin H, Donaubauer E (1993) Endophytic fungi in leaves and twigs of Quercus petraea. Eur J For Pathol 23:51–63
Hawksworth DL (2001) The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycol Res 105:1422–1432
Higgins KL, Arnold AE, Miadlikowska J, Sarvate SD, Lutzoni F (2007) Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages. Mol Phylogenet Evol 42:543–555
Hughes JB, Hellmann J, Ricketts T, Bohannan B (2001) Counting the uncountable: Statistical approaches to estimating microbial diversity. Appl Environ Microbiol 67:4399–4406
Hyde KD, Hawksworth DL (1997) Measuring and monitoring the biodiversity of microfungi. In: KD Hyde (ed) Biodiversity of tropical microfungi. Hong Kong University Press, Hong Kong, pp 11–28
Körner Ch, Asshoff R, Bignucolo O, Hättenschwiler S, Keel SG, Peláez-Riedl S, Pepin S, Siegwolf RTW, Zotz G (2005) Carbon flux and growth in mature deciduous forest trees exposed to elevated CO2. Science 309:1360–1362
Kowalski T, Kehr RD (1992) Endophytic fungal colonization of branch bases in several forest tree species. Sydowia 44:137–168
Lacap DC, Hyde KD, Liew ECY (2003) An evaluation of the fungal ‘morphotype’ concept based on ribosomal DNA sequences. Fungal Divers 12:53–66
Lodge DJ, Cantrell S (1995) Fungal communities in wet tropical forests: variation in time and space. Can J Bot 73[Suppl 1]:S1391–S1398
Lowman MD, Moffett M (1993) The ecology of tropical rain forest canopies. Tree 8:104–107
Lundqvist N (1972) Nordic Sordariaceae s. lat. Symb Bot Usalienses 20:1–361
McCune B, Mefford MJ (1999) PC-ORD. Multivariate analysis of ecological data, version 4. MjM Software Design, Gleneden Beach, Ore.
McElrone A, Reid C, Hoye K, Hart E, Jackson R (2005) Elevated CO2 reduces disease incidence and severity of a red maple fungal pathogen via changes in host physiology and leaf chemistry. Glob Chang Biol 11:1828–1836
Morawetz W (1998) The Surumoni Project: The botanical approach toward gaining an interdisciplinary understanding of the functions of the rain forest canopy. In: W Barthlott, E Wininger (eds) Biodiversity – a challenge for development research and policy. Springer, Berlin, pp 71–80
Morawetz W, Horchler PJ (2004) Leipzig Canopy Crane Project (LAK), Germany. In: Y Basset, V Horlyck, SJ Wright (eds) Studying forest canopies from above: the International Canopy Crane Network. Smithsonian Tropical Research Institute (Panama), United Nations Environmental Programme (UNEP), pp 79–85
Nadkarni NM, Parker GG, Rinker HB, Jarzen DM (2004) The nature of forest canopies. In: MD Lowman, HB Rinker (eds) Forest canopies, 2nd edn. Elsevier Academic Press, Amsterdam,pp 3–23
Newsham KK, Lewis GC, Greenslade PD, Mcleod AR (1998) Neotyphodium lolii, a fungal leaf endophyte, resuces fertility of Lolium perenne exposed to elevated UV-B radiation. Ann Bot 81:397–403
Novotny V, Basset Y (2000) Rare species in communities of tropical insect herbivores: pondering the mystery of singletons. Oikos 89:564–572
O’Donnel K (1993) Fusarium and its near relatives. In: DR Reynolds, JW Taylor (eds) Mitotic, meiotic and pleomorphic speciation in fungal systematics. CAB Int, Wallingford, pp 225–233
Ozanne CMP, Anhuf D, Boulter SL, Keller M, Kitching RL, Körner C, Meinzer FC, Mitchell AW, Nakashizuka T, Silva Dias PL, Stork NE, Wright SJ, Yoshimura M (2003) Biodiversity meets the atmosphere: a global view of forest canopies. Science 301:183–186
Pehl L, Butin H (1994) Endophytische Pilze in Blättern von Laubbäumen und ihre Beziehung zu Blattgallen (Zoocecidien). Mitt Biol Bundesanstalt Land- Forstwirtschaft Berlin-Dahlem 297:1–56
Pennisi E (2005) Sky-high experiments: using construction cranes to reach above towering treetops, scientists are achieving a better overview of forest ecology and how trees contribute to global climate change. Science 309:1314–1315
Petrini O (1986) Taxonomy of endophytic fungi of aerial plant tissues. In: NJ Fokkema, JV Hueval (eds) Microbiology of the phyllosphere. Cambridge University Press, Cambridge, pp 175–187
Petrini O, Sieber TN, Toti L, Viret O (1992) Ecology, metabolite production, and substrate utilization in endophytic fungi. Nat Toxins 1:185–196
Rohrschneider M, Horchler PJ, Morawetz W (2007) Measurement of the canopy height and visualisation of its surface structure. In: Unterseher M, Morawetz W, Klotz S, Arndt E (eds) The canopy of a temperate floodplain forest. Results from five years of research at the Leipzig Canopy Crane. University of Leipzig, pp 18–20
Rossman AY (1994) A strategy for an all-taxa inventory of fungal biodiversity. In: CI Peng, CH Chou (eds) Biodiversity and terrestrial ecosystems. Institute of Botany, Academia Sinica, Taipei, pp 169–194
Ruhnke H, Schädler M, Matthies D, Klotz S, Brandl R (2006) Are sawflies adapted to individual host trees? A test of the adaptive deme formation hypothesis. Evol Ecol Res 8:1039–1048
Sawyer AJ, Griggs MH, Wayne R (1994) Dimensions, density, and settling velocity of entomophtoralean conidia: implications for aerial dissemination of spores. J Invertebr Pathol 63:43–55
Schnittler M, Unterseher M, Tesmer J (2006) Species richness and ecological characterization of myxomycetes and myxomycete-like organisms in the canopy of a temperate deciduous forest. Mycologia 98:223–232
Schöne C, Jentsch A (2007) Tree seedling establishment and pattern formation-regeneration dynamics of a floodplain forest in central Europe (Germany). In: Unterseher M, Morawetz W, Klotz S, Arndt E (eds) The canopy of a temperate floodplain forest. Results from five years of research at the Leipzig Canopy Crane. University of Leipzig, pp 21–33
Scott B (2001) Epichloe endophytes: fungal symbionts of grasses. Curr Opin Microbiol 4:393–398
Sieber T, Hugentobler C (1987) Endophytic fungi in leaves and twigs of healthy and diseased beech trees (Fagus sylvatica L.). Eur J For Pathol 17:411–425
Sieber TN, Dorworth CE (1994) An Ecological study about assemblages of endophytic fungi in Acer macrophyllum in British-Columbia - in search of candidate mycoherbicides. Can J Bot 72:1397–1402
Stone JK, Polishook JD, White JF, Jr (2004) Endophytic fungi. In: GM Mueller, GF Bills, MS Foster (eds) Biodiversity of fungi. Inventory and monitoring methods. Elsevier Academic Press, Amsterdam, pp 241–270
Swofford DL (2003) PAUP*. Phylogenetic Analysis Using Parsiomony (* and other methods). Version 4. Sinauer Assoc, Sunderland
Unterseher M, Tal O (2006) Influence of small scale conditions on the diversity of wood decay fungi in a temperate, mixed deciduous forest canopy. Mycol Res 110:169–178
Unterseher M, Otto P, Morawetz W (2005) Species richness and substrate specificity of lignicolous fungi in the canopy of a temperate, mixed deciduous forest. Mycol Progr 4:117–132
Wilson D, Carroll GC (1994) Infection studies of Discula quercina, an endophyte of Quercus garryana. Mycologia 86:653–647
Wilson D (1995) Endophyte - the evolution of a term, and clarification of its use and definition. Oikos 73:274–276
Acknowledgements
We thank the Helmholtz Centre for Environmental Research Leipzig-Halle – UFZ (Project ID: UFZ 04/2004) and the City of Leipzig, ‘Gruenflaechenamt’) for financial and technical support. Many thanks go to Andreas Sickert (City of Leipzig, Gruenflaechenamt’ section ‘Stadtforsten’), Britta Kummer (Systematic Botany), Prof. Dr. Christian Wilhelm, Dr. Patricia Luis, Susanne Horn (Plant Physiology), Prof. Dr. Hauke Harms, Dr. Bärbel Kiesel, Ute Lohse, Verena Jaschik, and Elke Häusler (all UFZ, Department of Ecological Micorbiology) for technical support. We also appreciate the highly valuable comments of two anonymous reviewers.
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Wilfried Morawetz died in March 2007.
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Unterseher, M., Reiher, A., Finstermeier, K. et al. Species richness and distribution patterns of leaf-inhabiting endophytic fungi in a temperate forest canopy. Mycol Progress 6, 201–212 (2007). https://doi.org/10.1007/s11557-007-0541-1
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DOI: https://doi.org/10.1007/s11557-007-0541-1