Abstract
The mechanism of a chemical reaction can be characterized in terms of chemical events that take place during the reaction. These events are bond weakening/breaking and/or bond strengthening/forming. The reaction electronic flux (REF), a concept that identifies and rationalizes the electronic activity taking place along the reaction coordinate, has emerged recently as a powerful tool for characterizing the mechanism of chemical reactions. A quantitative theory introducing new descriptors for characterizing reaction mechanisms is presented in detail and three illustrative examples are revisited. In nucleophilic substitution reactions the REF indicates that bond breaking or forming events may be leading the electronic activity whereas in the methanol decomposition reaction by copper oxide, the REF allows to discover that consecutive electronic reductions of copper together with bond breaking processes control the course of the reaction.
Similar content being viewed by others
References
Fukui K. A formulation of the reaction coordinate. J Phys Chem, 1970, 74: 4161–4163
Fukui K. The path of chemical reactions—The IRC approach. Acc Chem Res, 1981, 14: 363–368
Gonzalez C, Schlegel HB. An improved algorithm for reaction path following. J Chem Phys, 1989, 90: 2154–2161
Toro-Labbé A. Characterization of chemical reactions from the profiles of energy, chemical potential, and hardness. J Phys Chem A, 1999, 103: 4398–4403
Jaque P, Toro-Labbé A. Theoretical study of the double proton transfer in the CHX-XH…CHX-XH (X = O, S) complexes. J Phys Chem A, 2000, 104: 995–1003
Toro-Labbé A, Gutiérrez-Oliva S, Concha MC, Murray JS, Politzer P. Analysis of two intramolecular proton transfer processes in terms of the reaction force. J Chem Phys, 2004, 121: 4570–4576
Gutiérrez-Oliva S, Herrera B, Toro-Labbé A, Chermette H. The role of the reaction force to characterize the hydrogen transfer between sulfur and oxygen atoms. J Phys Chem A, 2005, 109: 1748–1751
Rincón E, Jaque P, Toro-Labbé A. Reaction force analysis of the effect of Mg(II) on the 1,3 intramolecular hydrogen transfer in thymine. J Phys Chem A, 2006, 110: 9478–9485
Toro-Labbé A, Gutiérrez-Oliva S, Murray JS, Politzer P. A new perspective on chemical and physical processes: The reaction force. Molecul Phys, 2007, 105: 2619–2625
Burda JV, Murray JS, Toro-Labbé A, Gutiérrez-Oliva S, Politzer P. Reaction force analysis of solvent effects in the addition of HCl to propene. J Phys Chem A, 2009, 113: 6500–6503
Toro-Labbé A, Gutiérrez-Oliva S, Murray JS, Politzer P. The reaction force and the transition region of a reaction. J Mol Model, 2009, 15: 707–710
Polanyi JC, Zewail AH. Direct observation of the transition state. Acc Chem Res, 1995, 28: 119–132
Zewail AH. Femtochemistry: Atomic-scale dynamics of the chemical bond. J Phys Chem A, 2000, 104: 5660–5694
Herrera B, Toro-Labbé A. The role of reaction force and chemical potential in characterizing the mechanism of double proton transfer in the adenine-uracil complex. J Phys Chem A, 2007, 111: 5921–5926
Echegaray E, Toro-Labbé A. Reaction electronic flux: A new concept to get insights into reaction mechanisms. Study of model symmetric nucleophilic substitutions. J Phys Chem A, 2008, 112: 11801–11807
Vogt-Geisse S, Toro-Labbé A. The mechanism of the interstellar isomerization reaction HOC+ →HCO+ catalyzed by H2: New insights from the reaction electronic flux. J Chem Phys, 2009, 130: 244308
Flores-Morales P, Gutiérrez-Oliva S, Silva E, Toro-Labbé A. The reaction electronic flux: A new descriptor of the electronic activity taking place during a chemical reaction. Application to the characterization of the mechanism of the Schiff’s base formation in the Maillard reaction. J Mol Struct (Theochem), 2010, 943: 121–126
Duarte F, Toro-Labbé A. The mechanism of H2 activation by (amino) carbenes. J Phys Chem A, 2011, 115: 3050–3059
Chermette H. Chemical reactivity indexes in Density Functional Theory. J Comput Chem, 1999, 20: 129–154
Geerlings P, De Proft F, Langenaeker W. Conceptual Density Functional Theory. Chem Rev, 2003, 103: 1793–1873
Pauling L. The Nature of Chemical Bond. New York: Cornell University Press, 1960
Sen KD, Jorgensen CK. Electronegativity: Structure and Bonding. Vol 66. Berlin: Springer Verlag, 1987
Parr RG, Yang W. Density Functional Theory of Atoms and Molecules. New York: Oxford University Press, 1989
Pearson RG. Chemical Hardness. Oxford: Wiley-VCH, 1997
Sanderson RT. Partial charges on atoms in organic compounds. Science, 1955, 121: 207–208
Sanderson RT. Chemical Bonds and Bond Energy. New York: Academic Press, 1976
Sengupta S, Toro-Labbé A. Estimating molecular electronic chemical potential and hardness from fragments’ addition schemes. J Phys Chem A, 2002, 106: 4443–4446
Pearson RG. Hard and Soft Acid and Bases. Stroudsberg: Dowden, Hutchinson and Ross, 1973
Pearson RG. Absolute electronegativity and absolute hardness of Lewis acids and bases. J Am Chem Soc, 1985, 107: 6801–6806
Cerón ML, Herrera B, Araya P, Gracia F, Toro-Labbé A. The mechanism of methanol decomposition by CuO. A theoretical study based on the reaction force and reaction electronic flux analysis. J Mol Model, 2011, 17: 1625–1633
Boys S, Bernardi F. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors. Molec Phys, 1970, 19: 553–566
Simón S, Durán M, Dannenberg JJ. How does basis set superposition error change the potential surfaces for hydrogen-bonded dimers? J Chem Phys, 1996, 105: 11024–11031
Burda JV, Toro-Labbé A, Gutiérrez-Oliva S, Murray JS, Politzer P. Decomposition of activation barriers to elucidate solvent effects. J Phys Chem A, 2007, 111: 2455–2457
Politzer P, Burda JV, Concha MC, Lane P, Murray JS. Analysis of the reaction force for a Gas phase SN2 process: CH3Cl + H2O→CH3OH + HCl. J Phys Chem A, 2006, 110: 756–761
Ko JB, Bae CM, Jung YS, Kim DH. Cu-ZrO2 catalysts for water-gasshift reaction at low temperatures. Catal Letters, 2005, 105: 157–161
Oguchi H, Kanai H, Utani K, Matsumura Y, Imamura S. Cu2O as active species in the steam reforming of methanol by CuO/ZrO2 catalysts. Appl Catal A Gral, 2005, 293: 64–70
Becke AD. Density-functional thermochemistry. III. The role of exact exchange. J Chem Phys, 1993, 98: 5648–5652
Lee C, Yang W, Parr RG. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys Rev B, 1988, 37: 785–789
Hay PJ, Wadt WR. Ab initio effective core potentials for molecular calculations. Potentials for the transition metal atoms Sc to Hg. J Chem Phys, 1985, 82: 270–283
Hay PJ, Wadt WR. Ab initio effective core potentials for molecular calculations. Potentials for main group elements Na to Bi. J Chem Phys, 1985, 82: 284–298
Hay PJ, Wadt WR. Ab initio effective core potentials for molecular calculations. Potentials for K to Au including the outermost core orbitals. J Chem Phys, 1985, 82: 299–310
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Montgomery JA, Vreven T, Kudin KN, Burant JC, Millam JM, Iyengar SS, Tomasi J, Barone V, Mennucci B, Cossi M, Scalmani G, Rega N, Petersson GA, Nakatsuji H, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Klene M, Li X, Knox JE, Hratchian HP, Cross JB, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Ayala PY, Morokuma K, Voth G. A, Salvador P, Dannenberg JJ, Zakrzewski VG, Dapprich S, Daniels AD, Strain MC, Farkas O, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Ortiz JV, Cui Q, Baboul AG, Clifford S, Cioslowski J, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Martin RL, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Challacombe M, Gill PMW, Johnson B, Chen W, Wong MW, Gonzalez C, Pople JA. Gaussian 03, Revision D. 02. Pittsburgh: Gaussian, Inc., 2003
Author information
Authors and Affiliations
Corresponding author
Additional information
TORO-LABBÉ Alejandro, is Full Professor at PUC where he is the Director of the Quantum Theoretical Chemistry laboratory (QTC). In 1984 he received the Doctorat d’Etatés Sciences (Ph.D.) from the Universit Pierre et Marie Curie, in Paris, France. After completing postdoctoral work at the Pennsylvania State University (USA), he returned to Chile to take up a faculty position at the University of Chile before being appointed as Full Professor at PUC. He is a fellow of the John Simon Guggenheim Foundation and member of the Chilean Academy of Sciences. His research interests have centered on the elucidation of reaction mechanisms from the perspective of conceptual DFT.
CERÓN Maria Luisa, obtained her Ph.D. in Engineering in Materials Science from the University of Chile in 2011. She is currently working on the search of new materials for hydrogen storage using theoretical tools.
ECHEGARAY Eleonora, conducted her undergraduate studies at the Pontificia Universidad Católica de Chile, were she joined Dr. Alejandro Toro-Labbé group for graduate studies. Currently she is working on her Ph.D thesis, in the frame of the Reaction Electronic Flux project.
HERRERA Bárbara, received her Ph.D. from the Pontificia Universidad Católica de Chile (PUC) in 2004. She is currently Assistant Professor at PUC where she is member the Quantum Theoretical Chemistry (QTC) laboratory. She is author of many research publications on applications of conceptual DFT in proton transfer reactions and material sciences.
GUTIÉRREZ-OLIVA Soledad, received her Ph.D. from the Universidad de Chile in 2004. She is currently Assistant Professor at the Pontificia Universidad Católica de Chile where she is a member of the Quantum Theoretical Chemistry (QTC) laboratory. Professor Gutiérrez-Oliva has authored many research publications on conceptual DFT and reaction mechanisms. Currently, Professor Gutiérrez-Oliva is conducting research aimed at elucidating formation of glycine in the interstellar medium.
Rights and permissions
About this article
Cite this article
Cerón, M.L., Echegaray, E., Gutiérrez-Oliva, S. et al. The reaction electronic flux in chemical reactions. Sci. China Chem. 54, 1982–1988 (2011). https://doi.org/10.1007/s11426-011-4447-z
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11426-011-4447-z