Skip to main content
Log in

MiR-34 modulates Caenorhabditis elegans lifespan via repressing the autophagy gene atg9

  • Published:
AGE Aims and scope Submit manuscript

Abstract

Evidence for a regulatory role of the miR-34 family in senescence is growing. However, the exact role of miR-34 in aging in vivo remains unclear. Here, we report that a mir-34 loss-of-function mutation in Caenorhabditis elegans markedly delays the age-related physiological decline, extends lifespan, and increases resistance to heat and oxidative stress. We also found that RNAi against autophagy-related genes, atg4, bec-1, or atg9, significantly reversed the lifespan-extending effect of the mir-34 mutants. Furthermore, miR-34a inhibits Atg9A expression at the post-transcriptional level in vitro, and the miR-34a binding sequences in the 3'-UTR of Atg9A contributes to the modulation of Atg9A expression by miR-34a. Our results demonstrate that the C. elegans mir-34 mutation extends lifespan by enhancing autophagic flux in C. elegans, and that miR-34 represses autophagy by directly inhibiting the expression of the autophagy-related proteins Atg9 in mammalian cells.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  • Bartel DP (2009) MicroRNAs: target recognition and regulatory functions. Cell 136(2):215–233. doi:10.1016/j.cell.2009.01.002

    Article  PubMed  CAS  Google Scholar 

  • Boehm M, Slack F (2005) A developmental timing microRNA and its target regulate life span in C. elegans. Science 310(5756):1954–1957

    Article  PubMed  CAS  Google Scholar 

  • Brenner S (1974) The genetics of Caenorhabditis elegans. Genetics 77(1):71–94

    PubMed  CAS  Google Scholar 

  • Bussing I, Slack FJ, Grosshans H (2008) let-7 microRNAs in development, stem cells and cancer. Trends Mol Med 14(9):400–409. doi:10.1016/j.molmed.2008.07.001

    Article  PubMed  Google Scholar 

  • Chang TC, Wentzel EA, Kent OA, Ramachandran K, Mullendore M, Lee KH, Feldmann G, Yamakuchi M, Ferlito M, Lowenstein CJ, Arking DE, Beer MA, Maitra A, Mendell JT (2007) Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis. Mol Cell 26(5):745–752. doi:10.1016/j.molcel.2007.05.010

    Article  PubMed  CAS  Google Scholar 

  • Christoffersen NR, Shalgi R, Frankel LB, Leucci E, Lees M, Klausen M, Pilpel Y, Nielsen FC, Oren M, Lund AH (2009) p53-independent upregulation of miR-34a during oncogene-induced senescence represses MYC. Cell Death Differ. doi:10.1038/cdd.2009.109

  • Finch CE, Ruvkun G (2001) The genetics of aging. Annu Rev Genomics Hum Genet 2:435–462. doi:10.1146/annurev.genom.2.1.435

    Article  PubMed  CAS  Google Scholar 

  • Gamerdinger M, Hajieva P, Kaya AM, Wolfrum U, Hartl FU, Behl C (2009) Protein quality control during aging involves recruitment of the macroautophagy pathway by BAG3. EMBO J 28(7):889–901. doi:10.1038/emboj.2009.29

    Article  PubMed  CAS  Google Scholar 

  • Green DR, Kroemer G (2009) Cytoplasmic functions of the tumour suppressor p53. Nature 458(7242):1127–1130. doi:10.1038/nature07986

    Article  PubMed  CAS  Google Scholar 

  • Hammond SM, Sharpless NE (2008) HMGA2, microRNAs, and stem cell aging. Cell 135(6):1013–1016. doi:10.1016/j.cell.2008.11.026

    Article  PubMed  CAS  Google Scholar 

  • Hansen M, Chandra A, Mitic LL, Onken B, Driscoll M, Kenyon C (2008) A role for autophagy in the extension of lifespan by dietary restriction in C. elegans. PLoS Genet 4 (2):e24. doi:10.1371/journal.pgen.0040024

  • Hars ES, Qi H, Ryazanov AG, Jin S, Cai L, Hu C, Liu LF (2007) Autophagy regulates ageing in C. elegans. Autophagy 3(2):93–95

    PubMed  CAS  Google Scholar 

  • He C, Klionsky DJ (2009) Regulation mechanisms and signaling pathways of autophagy. Annu Rev Genet 43:67–93. doi:10.1146/annurev-genet-102808-114910

    Article  PubMed  CAS  Google Scholar 

  • He L, He X, Lim LP, de Stanchina E, Xuan Z, Liang Y, Xue W, Zender L, Magnus J, Ridzon D, Jackson AL, Linsley PS, Chen C, Lowe SW, Cleary MA, Hannon GJ (2007) A microRNA component of the p53 tumour suppressor network. Nature 447(7148):1130–1134. doi:10.1038/nature05939

    Article  PubMed  CAS  Google Scholar 

  • Honjoh S, Yamamoto T, Uno M, Nishida E (2009) Signalling through RHEB-1 mediates intermittent fasting-induced longevity in C. elegans. Nature 457(7230):726–730. doi:10.1038/nature07583

    Article  PubMed  CAS  Google Scholar 

  • Huang C, Xiong C, Kornfeld K (2004) Measurements of age-related changes of physiological processes that predict lifespan of Caenorhabditis elegans. Proc Natl Acad Sci U S A 101(21):8084–8089. doi:10.1073/pnas.0400848101

    Article  PubMed  CAS  Google Scholar 

  • Ibanez-Ventoso C, Yang M, Guo S, Robins H, Padgett RW, Driscoll M (2006) Modulated microRNA expression during adult lifespan in Caenorhabditis elegans. Aging Cell 5(3):235–246. doi:10.1111/j.1474-9726.2006.00210.x

    Article  PubMed  CAS  Google Scholar 

  • Ito T, Yagi S, Yamakuchi M (2010) MicroRNA-34a regulation of endothelial senescence. Biochem Biophys Res Commun 398(4):735–740. doi:10.1016/j.bbrc.2010.07.012

    Article  PubMed  CAS  Google Scholar 

  • Jia K, Levine B (2007) Autophagy is required for dietary restriction-mediated life span extension in C. elegans. Autophagy 3(6):597–599

    PubMed  Google Scholar 

  • Kuma A, Matsui M, Mizushima N (2007) LC3, an autophagosome marker, can be incorporated into protein aggregates independent of autophagy: caution in the interpretation of LC3 localization. Autophagy 3(4):323–328

    PubMed  CAS  Google Scholar 

  • Kumamoto K, Spillare EA, Fujita K, Horikawa I, Yamashita T, Appella E, Nagashima M, Takenoshita S, Yokota J, Harris CC (2008) Nutlin-3a activates p53 to both down-regulate inhibitor of growth 2 and up-regulate mir-34a, mir-34b, and mir-34c expression, and induce senescence. Cancer Res 68(9):3193–3203. doi:10.1158/0008-5472.CAN-07-2780

    Article  PubMed  CAS  Google Scholar 

  • Lafferty-Whyte K, Cairney CJ, Jamieson NB, Oien KA, Keith WN (2009) Pathway analysis of senescence-associated miRNA targets reveals common processes to different senescence induction mechanisms. Biochim Biophys Acta 1792(4):341–352. doi:10.1016/j.bbadis.2009.02.003

    Article  PubMed  CAS  Google Scholar 

  • Lee IH, Cao L, Mostoslavsky R, Lombard DB, Liu J, Bruns NE, Tsokos M, Alt FW, Finkel T (2008) A role for the NAD-dependent deacetylase Sirt1 in the regulation of autophagy. Proc Natl Acad Sci U S A 105(9):3374–3379. doi:10.1073/pnas.0712145105

    Article  PubMed  CAS  Google Scholar 

  • Li N, Bates DJ, An J, Terry DA, Wang E (2009) Up-regulation of key microRNAs, and inverse down-regulation of their predicted oxidative phosphorylation target genes, during aging in mouse brain. Neurobiol Aging. doi:10.1016/j.neurobiolaging.2009.04.020

  • Lingor P, Koeberle P, Kugler S, Bahr M (2005) Down-regulation of apoptosis mediators by RNAi inhibits axotomy-induced retinal ganglion cell death in vivo. Brain 128(Pt 3):550–558. doi:10.1093/brain/awh382

    Article  PubMed  Google Scholar 

  • Maes OC, Sarojini H, Wang E (2009) Stepwise up-regulation of MicroRNA expression levels from replicating to reversible and irreversible growth arrest states in WI-38 human fibroblasts. J Cell Physiol. doi:10.1002/jcp.21834

  • Mair W, Dillin A (2008) Aging and survival: the genetics of life span extension by dietary restriction. Annu Rev Biochem 77:727–754. doi:10.1146/annurev.biochem.77.061206.171059

    Article  PubMed  CAS  Google Scholar 

  • Melendez A, Levine B (2009) Autophagy in C. elegans. WormBook:1–26. doi:10.1895/wormbook.1.147.1

  • Melendez A, Talloczy Z, Seaman M, Eskelinen EL, Hall DH, Levine B (2003) Autophagy genes are essential for dauer development and life-span extension in C. elegans. Science Science 301(5638):1387–1391. doi:10.1126/science.1087782

    Article  Google Scholar 

  • Reggiori F, Tucker KA, Stromhaug PE, Klionsky DJ (2004) The Atg1-Atg13 complex regulates Atg9 and Atg23 retrieval transport from the pre-autophagosomal structure. Dev Cell 6(1):79–90

    Article  PubMed  CAS  Google Scholar 

  • Reggiori F, Shintani T, Nair U, Klionsky DJ (2005) Atg9 cycles between mitochondria and the pre-autophagosomal structure in yeasts. Autophagy 1(2):101–109

    Article  PubMed  CAS  Google Scholar 

  • Rosner M, Siegel N, Fuchs C, Slabina N, Dolznig H, Hengstschlager M (2010) Efficient siRNA-mediated prolonged gene silencing in human amniotic fluid stem cells. Nat Protoc 5(6):1081–1095. doi:10.1038/nprot.2010.74

    Article  PubMed  CAS  Google Scholar 

  • Salminen A, Kaarniranta K (2009a) Regulation of the aging process by autophagy. Trends Mol Med 15(5):217–224. doi:10.1016/j.molmed.2009.03.004

    Article  PubMed  CAS  Google Scholar 

  • Salminen A, Kaarniranta K (2009b) SIRT1: regulation of longevity via autophagy. Cell Signal 21(9):1356–1360. doi:10.1016/j.cellsig.2009.02.014

    Article  PubMed  CAS  Google Scholar 

  • Sethupathy P, Collins FS (2008) MicroRNA target site polymorphisms and human disease. Trends Genet 24(10):489–497. doi:10.1016/j.tig.2008.07.004

    Article  PubMed  CAS  Google Scholar 

  • Shimizu S, Kanaseki T, Mizushima N, Mizuta T, Arakawa-Kobayashi S, Thompson CB, Tsujimoto Y (2004) Role of Bcl-2 family proteins in a non-apoptotic programmed cell death dependent on autophagy genes. Nat Cell Biol 6(12):1221–1228. doi:10.1038/ncb1192

    Article  PubMed  CAS  Google Scholar 

  • Swerdlow S, McColl K, Rong Y, Lam M, Gupta A, Distelhorst CW (2008) Apoptosis inhibition by Bcl-2 gives way to autophagy in glucocorticoid-treated lymphocytes. Autophagy 4(5):612–620

    PubMed  CAS  Google Scholar 

  • Tasdemir E, Maiuri MC, Galluzzi L, Vitale I, Djavaheri-Mergny M, D'Amelio M, Criollo A, Morselli E, Zhu C, Harper F, Nannmark U, Samara C, Pinton P, Vicencio JM, Carnuccio R, Moll UM, Madeo F, Paterlini-Brechot P, Rizzuto R, Szabadkai G, Pierron G, Blomgren K, Tavernarakis N, Codogno P, Cecconi F, Kroemer G (2008) Regulation of autophagy by cytoplasmic p53. Nat Cell Biol 10(6):676–687. doi:10.1038/ncb1730

    Article  PubMed  CAS  Google Scholar 

  • Tavernarakis N, Pasparaki A, Tasdemir E, Maiuri MC, Kroemer G (2008) The effects of p53 on whole organism longevity are mediated by autophagy. Autophagy 4(7):870–873

    PubMed  CAS  Google Scholar 

  • Tazawa H, Tsuchiya N, Izumiya M, Nakagama H (2007) Tumor-suppressive miR-34a induces senescence-like growth arrest through modulation of the E2F pathway in human colon cancer cells. Proc Natl Acad Sci U S A 104(39):15472–15477. doi:10.1073/pnas.0707351104

    Article  PubMed  CAS  Google Scholar 

  • Toth ML, Sigmond T, Borsos E, Barna J, Erdelyi P, Takacs-Vellai K, Orosz L, Kovacs AL, Csikos G, Sass M, Vellai T (2008) Longevity pathways converge on autophagy genes to regulate life span in Caenorhabditis elegans. Autophagy 4(3):330–338

    PubMed  CAS  Google Scholar 

  • Vellai T (2009) Autophagy genes and ageing. Cell Death Differ 16(1):94–102. doi:10.1038/cdd.2008.126

    Article  PubMed  CAS  Google Scholar 

  • Wang X, Liu P, Zhu H, Xu Y, Ma C, Dai X, Huang L, Liu Y, Zhang L, Qin C (2009) miR-34a, a microRNA up-regulated in a double transgenic mouse model of Alzheimer's disease, inhibits bcl2 translation. Brain Res Bull. doi:10.1016/j.brainresbull.2009.08.006

  • Wu JJ, Quijano C, Chen E, Liu H, Cao L, Fergusson MM, Rovira II, Gutkind S, Daniels MP, Komatsu M, Finkel T (2009) Mitochondrial dysfunction and oxidative stress mediate the physiological impairment induced by the disruption of autophagy. Aging Albany NY 1(4):425–437

    PubMed  CAS  Google Scholar 

  • Xiao C, Rajewsky K (2009) MicroRNA control in the immune system: basic principles. Cell 136(1):26–36. doi:10.1016/j.cell.2008.12.027

    Article  PubMed  CAS  Google Scholar 

  • Yamakuchi M, Ferlito M, Lowenstein CJ (2008) miR-34a repression of SIRT1 regulates apoptosis. Proc Natl Acad Sci U S A 105(36):13421–13426. doi:10.1073/pnas.0801613105

    Article  PubMed  CAS  Google Scholar 

  • Zalckvar E, Berissi H, Eisenstein M, Kimchi A (2009) Phosphorylation of Beclin 1 by DAP-kinase promotes autophagy by weakening its interactions with Bcl-2 and Bcl-XL. Autophagy 5(5):720–722

    Article  PubMed  CAS  Google Scholar 

  • Zhang XD, Wang Y, Wu JC, Lin F, Han R, Han F, Fukunaga K, Qin ZH (2009) Down-regulation of Bcl-2 enhances autophagy activation and cell death induced by mitochondrial dysfunction in rat striatum. J Neurosci Res. doi:10.1002/jnr.22152

  • Zhao T, Li J, Chen AF (2010) MicroRNA-34a induces endothelial progenitor cell senescence and impedes its angiogenesis via suppressing silent information regulator 1. Am J Physiol Endocrinol Metab 299(1):E110–E116. doi:10.1152/ajpendo.00192.2010

    Article  PubMed  CAS  Google Scholar 

  • Zhu H, Wu H, Liu X, Li B, Chen Y, Ren X, Liu CG, Yang JM (2009) Regulation of autophagy by a beclin 1-targeted microRNA, miR-30a, in cancer cells. Autophagy 5(6):816–823

    PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We thank Dr. Mengqiu Dong (National Institute of Biological Science, Beijing,China) for providing helpful discussions and materials, Dr. Nektarios Tavernarakis (Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, Crete, Greece) for providing the pL4440-bec-1 plasmids, and Dr. Christian Mϋnz (Institute of Experimental Immunology, Department of Pathology, University Hospital of Zurich, Zurich, Switzerland) for the donation of the pEGFP-HLC3 plasmids.

This work was supported by a grant (2007CB507400) from the National Basic Research Program of China to XMC.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Xiangmei Chen.

Additional information

Jurong Yang and Dapeng Chen contributed equally to this work.

Electronic supplementary materials

Below is the link to the electronic supplementary material.

Fig. 1

(PDF 108 kb)

Table 1

(PDF 22 kb)

Table 2

(PDF 23 kb)

Table 3

(PDF 23 kb)

Table 4

(PDF 25 kb)

Table 5

(PDF 26 kb)

Table 6

(PDF 29 kb)

About this article

Cite this article

Yang, J., Chen, D., He, Y. et al. MiR-34 modulates Caenorhabditis elegans lifespan via repressing the autophagy gene atg9. AGE 35, 11–22 (2013). https://doi.org/10.1007/s11357-011-9324-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11357-011-9324-3

Keywords

Navigation