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Understanding the Jasmine phenotype of rice through metabolite profiling and sensory evaluation

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Abstract

Introduction

Aromatic rices are culturally and economically important for many countries in Asia. Investigation of the volatile compounds emitted by rice during cooking is the key to understanding the flavour of elite aromatic rice varieties.

Objectives

The objectives of this study were to compare Jasmine-type aromatic rices from the Greater Mekong Subregion and Australia in terms of their metabolomics and sensory profiles and to draw out associations between the volatile organic compounds and human sensory perception of rice aroma.

Methods

A set of aromatic rice varieties from South East Asia and Australia, along with non-aromatic controls, was grown in tropical and temperate areas of Australia. Untargeted metabolite profiling of volatile compounds, from the heated rice flour, by static headspace extraction and separation by two dimensional gas chromatography time-of-flight mass spectrometry was performed. Volatile compounds were also assayed in the standard references used in the sensory evaluation and compared to the compounds detected in the headspace of rice.

Results

While 2-acetyl-1-pyrroline (2-AP) was a discriminating compound, we identified several of its structural homologues, and a number of other metabolites that were consistently detected in fragrant Jasmine rice. 2-AP producing rice varieties have different sensory properties and these variations were defined by the discriminating compounds identified in each rice type.

Conclusions

The results of this study are valuable in understanding the aspects of aromatic rice that are important to consumers, and in the identification of compounds that breeding programs can use to select for pleasant aromas, enabling breeding programs to target markets with greater accuracy.

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References

  • ABS. (2011). Migration. Australian Bureau of Statistics.

  • Allwood, J. W., Erban, A., Koning, S., Dunn, W., Luedemann, A., Lommen, A., et al. (2009). Inter-laboratory reproducibility of fast gas chromatography–electron impact–time of flight mass spectrometry (GC–EI–TOF/MS) based plant metabolomics. Metabolomics, 5, 479–496. doi:10.1007/s11306-009-0169-z.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Barker, M., & Rayens, W. (2003). Partial least squares for discrimination. Journal of Chemometrics, 17, 166–173. doi:10.1002/cem.785.

    Article  CAS  Google Scholar 

  • Beier, R. C., Anderson, R. C., Krueger, N. A., Edrington, T. S., Callaway, T. R., & Nisbet, D. J. (2009). Effect of nitroethane and nitroethanol on the production of indole and 3-methylindole (skatole) from bacteria in swine feces by gas chromatography. Journal of Environmental Science and Health, Part B, 44, 613–620. doi:10.1080/03601230903000701.

    Article  CAS  Google Scholar 

  • Bergman, C. J., Delgado, J. T., Bryant, R. J., Grimm, C. C., Cadwallader, K. R., & Webb, B. D. (2000). Rapid gas chromatographic technique for quantifying 2-acetyl-1-pyrroline and hexanal in rice (Oryza sativa L.). Cereal Chemistry, 77, 454–458. doi:10.1094/CCHEM.2000.77.4.454.

    Article  CAS  Google Scholar 

  • Bett-Garber, K. L., Champagne, E. T., Ingram, D. A., & McClung, A. M. (2007). Influence of water-to-rice ratio on cooked rice flavor and texture. Cereal Chemistry, 84, 614–619. doi:10.1094/CCHEM-84-6-0614.

    Article  CAS  Google Scholar 

  • Bhattacharjee, P., Singhal, R. S., & Kulkarni, P. R. (2002). Basmati rice: A review. International Journal of Food Science & Technology, 37, 1–12. doi:10.1046/j.1365-2621.2002.00541.x.

    Article  CAS  Google Scholar 

  • Bradbury, L. M. T., Fitzgerald, T. L., Henry, R. J., Jin, Q., & Waters, D. L. E. (2005). The gene for fragrance in rice. Plant Biotechnology Journal, 3, 363–370. doi:10.1111/j.1467-7652.2005.00131.x.

    Article  CAS  PubMed  Google Scholar 

  • Bradbury, L., Gillies, S., Brushett, D., Waters, D., & Henry, R. (2008). Inactivation of an aminoaldehyde dehydrogenase is responsible for fragrance in rice. Plant Molecular Biology, 68, 439–449. doi:10.1007/s11103-008-9381-x.

    Article  CAS  PubMed  Google Scholar 

  • Brilli, F., Hörtnagl, L., Bamberger, I., Schnitzhofer, R., Ruuskanen, T. M., Hansel, A., et al. (2012). Qualitative and quantitative characterization of volatile organic compound emissions from cut grass. Environmental Science and Technology, 46, 3859–3865. doi:10.1021/es204025y.

    Article  CAS  PubMed  Google Scholar 

  • Bryant, R. J., & McClung, A. M. (2011). Volatile profiles of aromatic and non-aromatic rice cultivars using SPME/GC–MS. Food Chemistry, 124, 501–513. doi:10.1016/j.foodchem.2010.06.061.

    Article  CAS  Google Scholar 

  • Burdock, G. A., & Fenaroli, G. (2010). Fenaroli’s handbook of flavor ingredients (6th ed.). Boca Raton: CRC Press/Taylor & Francis. doi:10.1201/9781420037876.fmatt.

    Google Scholar 

  • Buttery, R. G., Juliano, B. O., & Ling, L. C. (1983a). Identification of rice aroma compound 2-acetyl-1-pyrroline in pandan leaves. Chemistry & Industry, 12, 478.

    Google Scholar 

  • Buttery, R. G., Ling, L. C., Juliano, B. O., & Turnbaugh, J. G. (1983b). Cooked rice aroma and 2-acetyl-1-pyrroline. Journal of Agricultural and Food Chemistry, 31, 823–826. doi:10.1021/jf00118a036.

    Article  CAS  Google Scholar 

  • Buttery, R. G., Ling, L. C., & Stern, D. J. (1997). Studies on popcorn aroma and flavor volatiles. Journal of Agricultural and Food Chemistry, 45, 837–843. doi:10.1021/jf9604807.

    Article  CAS  Google Scholar 

  • Buttery, R. G., Turnbaugh, J. G., & Ling, L. C. (1988). Contribution of volatiles to rice aroma. Journal of Agricultural and Food Chemistry, 36, 1006–1009. doi:10.1021/jf00083a025.

    Article  CAS  Google Scholar 

  • Bylesjö, M., Rantalainen, M., Cloarec, O., Nicholson, J. K., Holmes, E., & Trygg, J. (2006). OPLS discriminant analysis: Combining the strengths of PLS-DA and SIMCA classification. Journal of Chemometrics, 20, 341–351. doi:10.1002/cem.1006.

    Article  Google Scholar 

  • Calingacion, M. N., Boualaphanh, C., Daygon, V. D., Anacleto, R., Sackville, Hamilton R., Biais, B., et al. (2012). A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics, 8, 771–783. doi:10.1007/s11306-011-0374-4.

    Article  CAS  Google Scholar 

  • Calingacion, M., Fang, L., Quiatchon-Baeza, L., Mumm, R., Riedel, A., Hall, R., & Fitzgerald, M. (2015). Delving deeper into technological innovations to understand differences in rice quality. Rice, 8, 1–10. doi:10.1186/s12284-015-0043-8.

    Article  Google Scholar 

  • Calingacion, M., Laborte, A., Nelson, A., Resurreccion, A., Concepcion, J. C., Daygon, V. D., et al. (2014). Diversity of global rice markets and the science required for consumer-targeted rice breeding. PLoS One, 9, e85106. doi:10.1371/journal.pone.0085106.

    Article  PubMed  PubMed Central  Google Scholar 

  • Casey, G., Elaine, C., & Kenichi, O. (2001). Analysis of volatile compounds in the headspace of rice using SPME/GC/MS. Flavor, fragrance, and odor analysis (pp. 229–248). Boca Raton: CRC Press. doi:10.1201/9780203908273.ch8.

    Google Scholar 

  • Champagne, E. T. (2008). Rice aroma and flavor: A literature review. Cereal Chemistry Journal, 85, 445–454. doi:10.1094/cchem-85-4-0445.

    Article  CAS  Google Scholar 

  • Champagne, E., Bett-Garber, K., Fitzgerald, M., Grimm, C., Lea, J., Ohtsubo, K. I., et al. (2010). Important sensory properties differentiating premium rice varieties. Rice, 3, 270–281. doi:10.1007/s12284-010-9057-4.

    Article  Google Scholar 

  • Cheng, H. (2010). Volatile flavor compounds in yogurt: A review. Critical Reviews in Food Science and Nutrition, 50, 938–950. doi:10.1080/10408390903044081.

    Article  CAS  PubMed  Google Scholar 

  • Deshpande, S. S., & Bhattacharya, K. R. (2007). The texture of cooked rice. Journal of Texture Studies, 13, 31–42. doi:10.1111/j.1745-4603.1982.tb00875.x.

    Article  Google Scholar 

  • Dettmer, K., Almstetter, M. F., Wachsmuth, C. J., & Oefner, P. J. (2013). Comprehensive two-dimensional gas chromatography for metabolomics. The handbook of plant metabolomics (pp. 77–91). Weinheim: Wiley-VCH Verlag GmbH & Co. KGaA. doi:10.1002/9783527669882.ch4.

    Chapter  Google Scholar 

  • Dunn, W. B., Broadhurst, D., Begley, P., Zelena, E., Francis-McIntyre, S., Anderson, N., et al. (2011). Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nature Protocols, 6, 1060–1083. doi:10.1038/nprot.2011.335.

    Article  CAS  PubMed  Google Scholar 

  • FAO. (2009). Rice market monitor (Vol 12). Food and Agricultural Organization of the United Nations.

  • Fitzgerald, M., McCouch, S., & Hall, R. (2009). Not just a grain of rice: The quest for quality. Trends in Plant Science, 14, 133–139. doi:10.1016/j.tplants.2008.12.004.

    Article  CAS  PubMed  Google Scholar 

  • Fitzgerald, M. A., Sackville-Hamilton, N. R., Calingacion, M. N., Verhoeven, H. A., & Butardo, V, Jr. (2008). Is there a second gene for fragrance in rice? Plant Biotechnology Journal, 6, 416–423. doi:10.1111/j.1467-7652.2008.00327.x.

    Article  CAS  PubMed  Google Scholar 

  • Grimm, C. C., Champagne, E. T., Lloyd, S. W., Easson, M., & Condon, B. (2011). Analysis of 2-acetyl-1-pyrroline in rice by HSSE/GC/MS. Cereal Chemistry, 88, 271–277. doi:10.1094/cchem-09-10-0136.

    Article  CAS  Google Scholar 

  • Husson, F., Josse, J., Le, S., Mazet, J. (2015). FactoMineR: Multivariate exploratory data analysis and data mining. Rpackage version 1.31.3.

  • Jolliffe, I. T. (2002). Principal component analysis (Vol. 2). New York: Springer.

    Google Scholar 

  • Kaiser, R. (2006). Flowers and fungi use scents to mimic each other. Science, 311, 806–807. doi:10.1126/science.1119499.

    Article  CAS  PubMed  Google Scholar 

  • Kaiser, K. A., Merrywell, C. E., Fang, F., & Larive, C. K. (2008). Metabolic profiling. In U. Holzgrabe, I. Wawer, & B. Diehl (Eds.), NMR spectroscopy in pharmaceutical analysis (1st ed., pp. 233–267). North Holland: Elsevier.

    Chapter  Google Scholar 

  • Kassambara, A. (2015). factoextra: Visualization of the outputs of a multivariate analysis. R package version 1.0.1.

  • Kovach, M. J., Calingacion, M. N., Fitzgerald, M. A., & McCouch, S. R. (2009). The origin and evolution of fragrance in rice (Oryza sativa L.). Proceedings of the National Academy of Sciences, 106, 14444–14449. doi:10.1073/pnas.0904077106.

    Article  CAS  Google Scholar 

  • Kusano, M., Fukushima, A., Kobayashi, M., Hayashi, N., Jonsson, P., Moritz, T., et al. (2007). Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. Journal of Chromatography B, 855, 71–79. doi:10.1016/j.jchromb.2007.05.002.

    Article  CAS  Google Scholar 

  • Kuznetsova, A., Brockhoff, P. B., Christensen, R. H. B. (2013). lmerTest: Tests for random and fixed effects for linear mixed effect models (lmer objects of lme4 package). R package version, 2.

  • Laksanalamai, V., & Ilangantileke, S. (1993). Comparison of aroma compound 2-acetyl-1-pyrroline in leaves from pandan. Cereal Chemistry Journal, 70, 381–384.

    CAS  Google Scholar 

  • Laohakunjit, N., & Kerdchoechuen, O. (2007). Aroma enrichment and the change during storage of non-aromatic milled rice coated with extracted natural flavor. Food Chemistry, 101, 339–344. doi:10.1016/j.foodchem.2005.12.055.

    Article  CAS  Google Scholar 

  • Li, J. J., Johnson, E. S., Brown, M. A., Dubois, Z. G., Hutchins, V. T. H., Labitzke, K. M., Pelfrey, C. S. (2012). Compositions comprising an efficient perfume bloom. Google Patents.

  • Limpawattana, M., Yang, D. S., Kays, S. J., & Shewfelt, R. L. (2008). Relating sensory descriptors to volatile components in flavor of specialty rice types. Journal of Food Science, 73, S456–S461. doi:10.1111/j.1750-3841.2008.00952.x.

    Article  CAS  PubMed  Google Scholar 

  • Lisec, J., Schauer, N., Kopka, J., Willmitzer, L., & Fernie, A. R. (2006). Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols, 1, 10. doi:10.1038/nprot.2006.59.

    Article  Google Scholar 

  • Liu, Y., Miao, Z., Guan, W., & Sun, B. (2012). Analysis of organic volatile flavor compounds in fermented stinky tofu using SPME with different fiber coatings. Molecules (Basel, Switzerland), 17, 3708–3722. doi:10.3390/molecules17043708.

    Article  CAS  Google Scholar 

  • Maarse, H. (1991). Volatile compounds in foods and beverages. Food science and technology. New York: Marcel Dekker.

    Google Scholar 

  • Meilgaard, M., Civille, G. V., & Carr, B. T. (2007). Sensory evaluation techniques (Vol. 4). Boca Raton: Taylor & Francis.

    Google Scholar 

  • Meinert, C., & Meierhenrich, U. J. (2012). A new dimension in separation science: Comprehensive two-dimensional gas chromatography. Angewandte Chemie International Edition, 51, 10460–10470.

    Article  CAS  Google Scholar 

  • Park, D., & Maga, J. A. (2006). Identification of key volatiles responsible for odour quality differences in popped popcorn of selected hybrids. Food Chemistry, 99, 538–545. doi:10.1016/j.foodchem.2005.12.055.

    Article  CAS  Google Scholar 

  • Patel, R. S., Roy, M., & Dutta, G. K. (2012). Mass spectrometry—A review. Veterinary World, 5, 185–192. doi:10.5455/vetworld.2012.185-192.

    Article  CAS  Google Scholar 

  • Schieberle, P. (1991). Primary odorants in popcorn. Journal of Agricultural and Food Chemistry, 39, 1141–1144. doi:10.1021/jf00006a030.

    Article  CAS  Google Scholar 

  • Suwannaporn, P., & Linnemann, A. (2008). Rice-eating quality among consumers in different rice grain preference countries. Journal of Sensory Studies, 23, 1–13. doi:10.1111/j.1745-459X.2007.00129.x.

    Article  Google Scholar 

  • Suwansri, S., Meullenet, J. F., Hankins, J. A., & Griffin, K. (2002). Preference mapping of domestic/imported Jasmine rice for U.S.-Asian consumers. Journal of Food Science, 67, 2420–2431. doi:10.1111/j.1365-2621.2002.tb09564.x.

    Article  CAS  Google Scholar 

  • Tananuwong, K., & Lertsiri, S. (2010). Changes in volatile aroma compounds of organic fragrant rice during storage under different conditions. Journal of the Science of Food and Agriculture, 90, 1590–1596. doi:10.1002/jsfa.3976.

    Article  CAS  PubMed  Google Scholar 

  • Tanchotikul, U., & Hsieh, T. C. Y. (1991). An improved method for quantification of 2-acetyl-1-pyrroline, a “popcorn”-like aroma, in aromatic rice by high-resolution gas chromatography/mass spectrometry/selected ion monitoring. Journal of Agricultural and Food Chemistry, 39, 944–947. doi:10.1021/jf00005a029.

    Article  CAS  Google Scholar 

  • Thévenot, E. A., Roux, A., Xu, Y., Ezan, E., & Junot, C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index, and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. Journal of Proteome Research, 14, 3322–3335. doi:10.1021/acs.jproteome.5b00354.

    Article  PubMed  Google Scholar 

  • Umano, K., Hagi, Y., Shoji, A., & Shibamoto, T. (1990). Volatile compounds formed from cooked whole egg, egg yolk, and egg white. Journal of Agricultural and Food Chemistry, 38, 461–464. doi:10.1021/jf00092a028.

    Article  CAS  Google Scholar 

  • USDA. (2015). Grain: World markets and trade.

  • Van den Berg, R. A., Hoefsloot, H. C. J., Westerhuis, J. A., Smilde, A. K., & van der Werf, M. J. (2006). Centering, scaling, and transformations: Improving the biological information content of metabolomics data. BMC Genomics, 7, 1. doi:10.1186/1471-2164-7-142.

    Article  Google Scholar 

  • Vanavichit, A., & Yoshihashi, T. (2010). Molecular aspects of fragrance and aroma in rice. In K. Jean-Claude & D. Michel (Eds.), Advances in botanical research (Vol. 56, pp. 49–73). Amsterdam: Academic Press. doi:10.1016/S0169-7439(01)00155-1.

    Google Scholar 

  • Walradt, J. P., Lindsay, R. C., & Libbey, L. M. (1970). Popcorn flavor: Identification of volatile compounds. Journal of Agricultural and Food Chemistry, 18, 926–928. doi:10.1021/jf60171a048.

    Article  Google Scholar 

  • Wilkie, K., Wootton, M. (2004). Flavour qualities of new Australian fragrant rice cultivars. Rural Industries Research and Development Corporation.

  • Williamson, L. N., & Bartlett, M. G. (2007). Quantitative gas chromatography/time-of-flight mass spectrometry: A review. Biomedical Chromatography, 21, 664–669.

    Article  CAS  PubMed  Google Scholar 

  • Wold, S., Sjöström, M., & Eriksson, L. (2001). PLS-regression: A basic tool of chemometrics. Chemometrics and Intelligent Laboratory Systems, 58, 109–130. doi:10.1016/S0169-7439(01)00155-1.

    Article  CAS  Google Scholar 

  • Worley, B., Halouska, S., & Powers, R. (2013). Utilities for quantifying separation in PCA/PLS-DA scores plots. Analytical Biochemistry, 433, 102–104. doi:10.1016/j.ab.2012.10.011.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Worley, B., & Powers, R. (2013). Multivariate analysis in metabolomics. Current Metabolomics, 1, 92–107. doi:10.2174/2213235X11301010092.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Yang, D. S., Shewfelt, R. L., Lee, K.-S., & Kays, S. J. (2008). Comparison of odor-active compounds from six distinctly different rice flavor types. Journal of Agricultural and Food Chemistry, 56, 2780–2787. doi:10.1021/jf072685t.

    Article  CAS  PubMed  Google Scholar 

  • Yoshihashi, T. (2002). Quantitative analysis on 2-acetyl-1-pyrroline of an aromatic rice by stable isotope dilution method and model studies on its formation during cooking. Journal of Food Science, 67, 619–622. doi:10.1111/j.1365-2621.2002.tb10648.x.

    Article  CAS  Google Scholar 

  • Yoshihashi, T., Nguyen, T. T. H., & Kabaki, N. (2004). Area dependency of 2-acetyl-1-pyrroline content in an aromatic rice variety, Khao Dawk Mali 105. Japan Agricultural Research Quarterly: JARQ, 38, 105–109. doi:10.6090/jarq.38.105.

    Article  CAS  Google Scholar 

  • Zhou, M., Robards, K., Glennie-Holmes, M., & Helliwell, S. (1999). Analysis of volatile compounds and their contribution to flavor in cereals. Journal of Agricultural and Food Chemistry, 47, 3941–3953. doi:10.1021/jf990428l.

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

We thank Andrew Barfield for growing the samples in Mackay, Queensland; Kevin Tan, Lu Yu, Khang Tran, Sara Gorji, Lourdes Alandete, Guangli Feng, Piyali Chakraborty, Galex Neoh, Weng Yu and Nook Kullaweelee for participating in the sensory evaluation. VD and AR gratefully acknowledge financial support from the Rural Industries Research and Development Corporation.

Funding

This study was funded by Rural Industries Research and Development Corporation Project PRJ008568 awarded to MF, SP, JM and BO.

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Correspondence to Melissa Fitzgerald.

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All authors declare that no conflict of interest exists.

Ethical approval

This study was conducted under the Human Ethics Approval # 2014000182. All procedures for conducting the sensory analysis were in accordance with the ethical standards of the institutional and/or national research committee and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards. Informed consent was obtained from all individual participants included in the study.

Electronic supplementary material

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Fig. S1

PCA scoreplot of sample data allocated to a sequence of nine batches in relation to their injection sequence in GCxGC-TOF-MS. Supplementary material 1 (PNG 58 kb)

Fig. S2

Total ion 3D Plot of aromatic rice samples showing different compounds: alcohols, unsaturated aldehydes, saturated aldehydes (red underlined), aromatics and alkane/alkene series. Supplementary material 2 (JPEG 2976 kb)

Table S1

Germplasm details of the rices used in this study. Supplementary material 3 (DOCX 16 kb)

Table S2

Sensory descriptors and corresponding reference standard. Supplementary material 4 (DOCX 14 kb)

Table S3

List of analytical standards included in the in-house library. Supplementary material 5 (DOCX 16 kb)

Table S4

Data processing method used in pre-processing the metadata in Stat Compare plugin of ChromaTof v 4.50. Supplementary material 6 (DOCX 14 kb)

Table S5

Analyses of Variance (of type III with Satterthwaite approximation for degrees of freedom) to confirm the absence of batch and drift effects for each of the first five dimensions of the data after PCA. Supplementary material 7 (DOCX 15 kb)

Table S6

Mean scores and standard deviation for each sample. ‘M’ and ‘Y’ in the sample designation denotes the planting site (Mackay and Yanco, respectively). Supplementary material 8 (DOCX 17 kb)

Table S7

Putative VOCs detected by GCxGC-TOF-MS in three replicates of the reference standards. Supplementary material 9 (XLSX 56 kb)

Table S8

VIP scores from oPLS-DA analyses comparing indica and japonica rices. For each of five analyses one variety of japonica was held out from the data set to protect against comparing unbalanced data. Metabolites consistently on the top ten are in bold. Supplementary material 10 (DOCX 18 kb)

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Daygon, V.D., Prakash, S., Calingacion, M. et al. Understanding the Jasmine phenotype of rice through metabolite profiling and sensory evaluation. Metabolomics 12, 63 (2016). https://doi.org/10.1007/s11306-016-0989-6

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