Skip to main content
Log in

Role of genomics in the potential restoration of the American chestnut

  • Original Paper
  • Published:
Tree Genetics & Genomes Aims and scope Submit manuscript

Abstract

The development of genomic tools will enhance traditional tree breeding technologies leading to more certain and timely recovery of the American chestnut, a keystone heritage tree of the eastern United States. Major efforts are being made in gene discovery, genetic marker development, construction of a BAC-based physical map, and DNA transformation technology. A strategy of map-based cloning, association genetics, and genetic engineering, combined with traditional and marker-assisted backcross breeding is proposed for the long-term genetic restoration of this iconic tree species.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Allen TD, Dawe AL, Nuss DL (2003) Use of cDNA microarrays to monitor transcriptional responses of the chestnut blight fungus Cryphonectria parasitica to infection by virulence-attenuating hypoviruses. Eukaryotic Cell 2003:1253–1265

    Article  CAS  Google Scholar 

  • Anagnostakis SL (1977) Vegetative incompatibility in Endothia parasitica. Exp Mycol 1:306–316

    Article  Google Scholar 

  • Anagnostakis SL (2001) The effect of multiple importations of pests and pathogens on a native tree. Biological Invasions 3:245–254

    Article  Google Scholar 

  • Anderson PJ (1914) The morphology and life history of the chestnut blight fungus. Bulletin 7, Pennsylvania Chestnut Tree Blight Commission, Harrisburg, Pennsylvania, 44 pp

  • Andrade GM, Nairn CJ, Le HT, Merkle SA (2005) Regeneration of transgenic American Chestnut plants following co-cultivation of embryogenic tissues with Agrobacterium tumefaciens. IUFRO Tree Biotechnology 2005, November 6–11, 2005, Pretoria, South Africa. Abstract No. S7, p 10

  • Barreneche T, Casasoli M, Russell K, Akkak A, Meddour H, Plomion C, Villani F, Kremer A (2004) Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs). Theor Appl Genet 108:558–566

    Article  PubMed  CAS  Google Scholar 

  • Bent AF (1996) Plant disease resistance genes: function meets structure. Plant Cell 8:1757–1771

    Article  PubMed  CAS  Google Scholar 

  • Carraway DT, Wilde HD, Merkle SA (1994) Somatic embryogenesis and gene transfer in American chestnut. J Am Chestnut Found 8(1):29–33

    Google Scholar 

  • Casasoli M, Mattioni C, Cherubini M, Villani F (2001) A genetic linkage map of European chestnut (Castanea sativa Mill.) based on RAPD, ISSR and isozyme markers. Theor Appl Genet 102:1190–1199

    Article  CAS  Google Scholar 

  • Casasoli M, Derory J, Morera-Dutrey C, Brendel O, Porth I, Guehl JM, Villani F, Kremer A (2006) Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map. Genetics 172:533–546

    Article  PubMed  CAS  Google Scholar 

  • Castro MS, Fontes W (2005) Plant defense and antimicrobial peptides. Protein and Peptide Letters 12:11–16

    Article  Google Scholar 

  • Dana MdlM, Pintor-Toro JA, Cubero B (2006) Transgenic tobacco plants overexpressing chitinases of fungal origin show enhanced resistance to biotic and abiotic stress agents. Plant Physiol 142:722–730

    Article  CAS  Google Scholar 

  • Davis D (2006) Historical significance of American chestnut to Appalachian culture and ecology. In: Steiner KC and Carlson JE (eds) Restoration of American chestnut to forest lands—Proc of a conference and workshop. May 4–6, 2004, The North Carolina Arboretum. Natural Res Rep NPS/NCR/CUE/NRR-2006/001, National Park Service

  • Dekkers JCM, Hospital F (2002) The use of molecular genetics in improvement of agricultural populations. Nat Rev Genet 3:22–32

    Article  PubMed  CAS  Google Scholar 

  • Freinkel S (2007) American chestnut: the life, death, and rebirth of a perfect tree. University of California Press, Berkeley, CA

    Google Scholar 

  • Friedt W, Ordon F (2007) Molecular markers for gene pyramiding and disease resistance breeding in barley. In: Varshney RK, Tuberosa R (eds) Genomics-assisted crop improvement, vol 2: Genomics applications in crops. Springer, pp 81–102

  • Gonzalez-Martinez SC, Wheeler NC, Ersoz E, Nelson CD, Neale DB (2007) Association genetics in Pinus taeda L. I. Wood property traits. Genetics 175:399–409

    Article  PubMed  Google Scholar 

  • Grente J (1965) Les formes hypovirulentes d’Endothia parasitica et les espoirs de lutte contre le chancre du chantaingnier. CR Acad Agric France 51:1033–1037

    Google Scholar 

  • Griffin GJ (2000) Blight control and restoration of the American chestnut. J For 98:22–27

    Google Scholar 

  • Griffin GJ, Elkins JR, McCurdy D, Griffin SL (2006) Integrated use of resistance, Hypovirulence, and forest management to control blight on American chestnut. In: Steiner KC, Carlson JE (eds) Restoration of American chestnut to forest lands—Proc of a conference and workshop. May 4–6, 2004, The North Carolina Arboretum. Natural Res Rep NPS/NCR/CUE/NRR-2006/001, National Park Service

  • Hebard FV (2006) The backcross breeding program of the American chestnut foundation. In: Steiner KC, Carlson JE (eds) Restoration of American chestnut to forest lands—Proc of a conference and workshop. May 4–6, 2004, The North Carolina Arboretum. Natural Res Rep NPS/NCR/CUE/NRR-2006/001, National Park Service

  • Hill JM (1994) Wildlife value of Castanea dentata past and present, the historical decline of the chestnut and its future use in restoration of natural areas. In: Double ML, MacDonald WL (eds) Proceedings of the International Chestnut Conference. West Virginia University Press, Morgantown, West Virginia, pp 186–193

    Google Scholar 

  • Hillel J, Schaap T, Haberfeld A, Jeffreys AJ, Plotzky Y, Cahaner A, Lavi U (1990) DNA fingerprints applied to gene introgression in breeding programs. Genetics 124:783–789

    PubMed  CAS  Google Scholar 

  • Hospital F, Charcosset A (1997) Marker-assisted introgression of quantitative trait loci. Genetics 147:1469–1485

    PubMed  CAS  Google Scholar 

  • Hospital F, Chevalet C, Mulsant P (1992) Using markers in gene introgression breeding programs. Genetics 132:1199–1210

    PubMed  CAS  Google Scholar 

  • Hospital F, Bouchez A, Lecomte L, Causse M, Charcosset A (2002) Use of markers in plant breeding: Lessons from genotype building experiments. Electronic communication 22:05 in Proc. 7th World Cong. Genet. Appl. Livest. Prod., Montpellier, France

  • Huang R, Xiang Y, Liu X, Zhang Y, Hu Z, Wang D (2002) Two novel antifungal peptides distinct with a five-disulfide motif from the bark of Eucommia ulmoides Oliv. FEBS Lett 521:87–90

    Article  PubMed  CAS  Google Scholar 

  • Islam-Faridi N, Nelson CD, Banda H, Majid MA, Kubisiak TL, Hebard FV, Sisco PH, Paris RL, Phillips RL (2008) Cytogenetic analysis of a reciprocal translocation in F1 hybrid between American and Chinese chestnuts. Plant and Animal Genomes XVI Conference. Abstract W346. San Diego, CA

  • Jacobs DF (2005) Evaluating the efficiency of carbon sequestration in American chestnut (Castanea dentata), EPRI, Palo Alto, CA: 1011518

  • Jander G, Norris SR, Rounsley SD, Bush DF, Levin IM, Last RL (2002) Arabidopsis map based cloning in the post genomic era. Plant Physiol 129:440–450

    Article  PubMed  CAS  Google Scholar 

  • Jaynes RA (1994) Reflections. In: Double ML, MacDonald (eds) Proc International Chestnut Conference. West Virginia University Press, Morgantown

    Google Scholar 

  • Kohler A, Rinaldi C, Duplessis S, Baucher M, Geelen D, Duchaussoy F, Meyers B, Boerjan W, Martin F (2008) Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Mol Biol 66:619–636

    Article  PubMed  CAS  Google Scholar 

  • Kubisiak TL, Hebard FV, Nelson CD, Zhang J, Bernatzky R, Huang H, Anagnostakis SL, Doudrick RL (1997) Molecular mapping of resistance to blight in an interspecific cross in the genus Castanea. Amer Phytopathological Soc 87:751–759

    CAS  Google Scholar 

  • Lane BG (2002) Oxalate, germins and higher plant pathogens. IUBMB Life 53:67075

    Article  Google Scholar 

  • Lecape J-M, Nguyen T-B, Hau B, Giband M (2007) Targeted introgression of cotton fibre quality quantitative trait loci using molecular markers. In: Guimaraes EP, Ruane J, Schert BD, Sonnino A, Dargie JD (eds) Marker-assisted selection: current status and future perspectives in crops, livestock, forestry and fish. FAO, Rome

    Google Scholar 

  • MacDonald WL, Double ML (2006) Hypovirulence: use and limitations as a chestnut blight biological control. In: Steiner KC, Carlson JE (eds) Restoration of American chestnut to forest lands—Proc of a conference and workshop. May 4–6, 2004, The North Carolina Arboretum. Natural Res Rep NPS/NCR/CUE/NRR-2006/001, National Park Service

  • MacDonald WL, Fulbright DW (1991) Biological control of chestnut blight: use and limitations of transmissible hypovirulence. Plant Dis 75:656–661

    Google Scholar 

  • Margulies M, Egholm M et al (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376–380

    PubMed  CAS  Google Scholar 

  • McHale L, Tan X, Koehl P, Michelmore R (2006) Plant NBS-LRR proteins: adaptable guards. Genome Biology 7:212–227

    Article  PubMed  CAS  Google Scholar 

  • Mehlenbacher SA, Brown RN, Davis JW, Chen H, Bassil NV, Smith DC, Kubisiak TL (2004) RAPD markers linked to eastern filbert blight resistance in Corylus avellana. Theor Appl Genet 108:651–656

    Article  PubMed  CAS  Google Scholar 

  • Merkle SA, Andrade GM, Nairn CJ, Powell WA, Maynard CA (2006) Restoration of threatened species: a noble cause for transgenic trees. Tree Genetics and Genomes 3(2):111–118

    Article  Google Scholar 

  • Morgante M, Salamini F (2003) From plant genomics to breeding practice. Curr Opin Biotechnol 14:214–219

    Article  PubMed  CAS  Google Scholar 

  • Neale DB (2007) Genomics to tree breeding and forest health. Curr Opin Genet Dev 17:1–6

    Article  CAS  Google Scholar 

  • Neale DB, Ingvarsson P (2008) Population, quantitative and comparative genomics of adaptation in forest trees. Curr Opin Plant Biol 11:1–7

    Article  Google Scholar 

  • Neale DB, Savolainen O (2004) Association genetics of complex traits in conifers. Trends Plant Sci 9:325–330

    Article  PubMed  CAS  Google Scholar 

  • Paillet FL (2000) Chestnut: history and ecology of a transformed species. J Biogeogr 29:1517–1530

    Article  Google Scholar 

  • Polin LD, Liang H, Rothrock RE, Hishii M, Diehl DL (2006) Agrobacterium-mediated transformation of American chestnut [(Castanea dentata Marsh.) Borkh.] somatic embryos. Plant Cell Tissue Organ Cult 84:69–78

    Article  CAS  Google Scholar 

  • Rafalski A (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5:94–100

    Article  PubMed  CAS  Google Scholar 

  • Rieseberg LH, Linder CR, Seiler GJ (1995) Chromosomal and genic barriers to introgression in Helianthus. Genetics 141:1163–1171

    PubMed  CAS  Google Scholar 

  • Russell EWB (1987) Preblight distribution of Castanea dentata (Marsh) Borkh. Bull Torrey Bot Club 114:183–190

    Article  Google Scholar 

  • Russell EWB, Davis RB (2001) Five centuries of changing forest vegetation in the northeastern United States. Plant Ecol 155:1–13

    Article  Google Scholar 

  • Salvi S, Tuberosa R (2007) Cloning QTLs in plants. In: Varshney RK, Tuberosa R (eds) Genomics-assisted crop improvement, vol 1: genomics approaches and platforms. Springer, pp 207–226

  • Saucier JR (1973) Natural range of American chestnut. USDA Forest Service Fact Sheet 230

  • Sisco PH, Kubisiak TL, Cadasoli M, Barreneche T, Kremer A, Clark C, Sederoff PR, Hebard FV, Villani F (2005) An improved genetic map for Castanea mollissima/Castanea dentata and its relationship to the genetic map of C. sativa. In: Abreu CF, Rosa E, Monteirro AA (eds) Proc. IIIrd Intl. Chestnut Congress. Acta Hort 693:491–495

  • Stephenson SL, Adams HS, Lipford ML (1991) The present distribution of chestnut in the upland forest communities of Virginia. Bull Torrey Bot Club 118:24–32

    Article  Google Scholar 

  • Strauss SH, Bradshaw HD (eds) (2004) The BioEngineered forest: challenges to science and society (Resources for the Future, Washington, DC, 2004). ISBN 1-891853-71-6

  • Tanksley SD, Ganal MW, Martin GB (1995) Chromosome landing: a paradigm for map based gene cloning in plants with large genomes. TIG 11:63–68

    PubMed  CAS  Google Scholar 

  • Tenaillon MI, Sawkins MC, Long AD, Gaut RL, Doebley JF, Gaut BS (2001) Patterns of DNA sequence polymorphism along chromosome 1 in maize. Proc Natl Acad Sci 98:9161–9166

    Article  PubMed  CAS  Google Scholar 

  • U.S. Census Bureau (1908) The lumber cut of the United States, 1907. For Products 2:1–53

    Google Scholar 

  • Verhoeven KJF, Jannink J-L, McIntyre LM (2006) Using mating designs to uncover QTL and the genetic architecture of complex traits. Heredity 96:139–149

    Article  PubMed  CAS  Google Scholar 

  • Welch AJ, Stipanovic AJ, Maynard CA, Powell WA (2007) The effects of oxalic acid on transgenic Castanea dentata callus tissue expressing oxalate oxidase. Plant Sci 172:488–496

    Article  CAS  Google Scholar 

  • White TL, Adams WT, Neale DB (2007) Forest genetics. CABI Publishing, Cambridge MA

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nicholas Wheeler.

Additional information

Communicated by Jeffrey Dean

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wheeler, N., Sederoff, R. Role of genomics in the potential restoration of the American chestnut. Tree Genetics & Genomes 5, 181–187 (2009). https://doi.org/10.1007/s11295-008-0180-y

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11295-008-0180-y

Keywords

Navigation