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Oxalotrophic Paracoccus alcaliphilus isolated from Amorphophallus sp. rhizoplane

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Abstract

A new type of oxalate-utilizing Paracoccus sp. was isolated from Amorphophallus rhizoplane. Basic physiological tests and 16S rDNA sequencing was performed to identify the strain. Optimum growth was observed at 37 °C and pH 8.0 in minimal oxalate (0.5% disodium oxalate) with doubling time of 7 h. Its closest phylogenetic neighbours, as deduced by 16S rDNA-based analysis, were Paracoccus alcaliphilus KCT002, P. alcaliphilus JCM 7364 (TK1015) and P. seriniphilus MBT-A4 with 99.85, 98.35 and 97.31% sequence similarity respectively. Oxalate was metabolized via the serine pathway, as evidenced by the presence of oxalyl-coA reductase, l-serine glyoxylate aminotransferase and hydroxypyruvate reductase.

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References

  • Altschul SF, Madden TL, Schaffer AA et al (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

    Article  CAS  Google Scholar 

  • Ausubel FM, Brent R, Kingston RE et al (eds) (1999) Short protocols in molecular biology. Wiley, New York, pp 2.12–2.13

  • Barry AL, Thornsberry C (1985) Susceptibility test: diffusion test procedures. In: Lennette EH, Balows A, Hausler WJ Jr, Shadomy HJ (eds) Manual of clinical microbiology. American Society of Microbiology, Washington, pp 978–987

    Google Scholar 

  • Barry AL, Coyle MB, Thornsberry C et al (1979) Methods of measurements of inhibition with the bauer-kirby disk susceptibility test. J Clin Microbiol 10:885–889

    CAS  Google Scholar 

  • Blackmore MA, Quayle JR (1970) Microbial growth on oxalate by route not involving glyoxylate carboligase. Biochem J 118:53–59

    CAS  Google Scholar 

  • Braissant O, Verrecchia EP, Aragno M (2002) Is the contribution of bacteria to terrestrial carbon budget greatly underestimated? Naturwissenschaften 89:366–370

    Article  CAS  Google Scholar 

  • Brosius J, Palmer ML, Kennedy PJ et al (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75:4801–4805

    Article  CAS  Google Scholar 

  • Chandra TS, Shethna YL (1975) Isolation and characterization of some new oxalate decomposing bacteria. Antonie Van Leeuwenhoek J Microbiol Serol 41:101–111

    Article  CAS  Google Scholar 

  • Chandra TS, Shethna YI (1977) Oxalate, formate, formamide, and methanol metabolism in Thiobacillus novellus. J Bacteriol 131(2):389–398

    CAS  Google Scholar 

  • Chirajyoti D, Erko S, Silke P et al (2004) Phylogenetically diverse new sulfur chemolithotrophs of alpha-proteobacteria isolated from Indian soils. Curr Microbiol 48:452–458

    Google Scholar 

  • Doronina NV, Trotsenko YA, Krausova VI et al (1998) Paracoccus methylutens sp. Nov.- a new aerobic facultatively methylotrophic bacterium-utilizing dichloromethane. Syst Appl Microbiol 21:230–236

    CAS  Google Scholar 

  • Doronina NV, Trotsenko YA, Kuznetzov BB et al (2002) Emended description of Paracoccus kondratievae. Int J Syst Evol Microbiol 52: 679–682

    Article  CAS  Google Scholar 

  • Edward RC, Anbazhagan K, Selvam GS (2006) Isolation and characterization of metal-resistant Pseudomonas aeruginosa strain. World J Microbiol Biotechnol 22:577–585

    Article  CAS  Google Scholar 

  • Fages J (1994) Azospirillum inoculants and field experiments. In: Okon Y (ed) Azospirillum, plant associations. CRC, Boca Raton, pp 87–109

    Google Scholar 

  • Felsenstein J (1985) Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  Google Scholar 

  • Ghosh W, Mandal S, Roy P (2006) Paracoccus bengalensis sp. nov., a novel sulfur-oxidizing chemolithoautotroph from the rhizospheric soil of an Indian tropical leguminous plant. Syst Appl Microbiol 29:396–403

    Article  CAS  Google Scholar 

  • Hodkinson A, Williams A (1972) An improved colorimetric procedure for urine oxalate. Clin Chim Acta 36:127–132

    Article  Google Scholar 

  • Horner HT, Wagner BL (1995) Calcium oxalate formation in higher plants. In: Khan SR (ed) Calcium oxalate in biological systems. CRC, Boca Raton, pp 53–72

    Google Scholar 

  • Katayama Y, Hiraishi A, Kuraishi H (1995) Paracoccus thiocyanatus sp. nov., a new species of thyocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus. Microbiology 141:1469–1477

    Article  CAS  Google Scholar 

  • Krieg NR, Holt JG (eds) (1984) Bergey’s manual of systematic bacteriology, vol 1. Williams and Wilkins, Baltimore

    Google Scholar 

  • Lipski A, Reichert K, Reuter B et al (1998) Identification of bacterial isolates from biofilters as Paracoccus alkenifer sp. nov. and Paracoccus solventivorans with emended description of Paracoccus solventivorans. Int J Syst Bacteriol 48:529–536

    CAS  Google Scholar 

  • Martimer PS, Storp H, Truper HG et al (eds) (1981) The Prokaryotes, a hand book on habitat, isolation and identification of bacteria. Springer, Berlin

  • Nazeema A, Mary S, Selvam GS (1998) Isolation and characterization of oxalate-degrading bacteria from marine and terrestrial environment of Cochin. J Sci Ind Res 57:795–799

    Google Scholar 

  • Perriere G, Gouy M (1996) WWW query: an on-line retrieval system for biological sequence banks. Biochimie 78:364–369

    Article  CAS  Google Scholar 

  • Quayle JR, Taylor GA (1961) Carbon assimilation by Pseudomonas oxalaticus (OX1). 5. Purification and properties of glyoxylic dehydrogenase. Biochem J 78:611–615

    CAS  Google Scholar 

  • Quayle JR, Keech DB, Taylor GA (1961) Carbon assimilation by Pseudomonas oxalaticus (OX1). 4. Metabolism of oxalate in cell-free extracts of the organism grown on oxalate. Biochem J 78:225–236

    CAS  Google Scholar 

  • Rainey FA, Kelly DP, Stackebrandt E et al (1999) A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. Int J Syst Bacteriol 49:645–651

    Google Scholar 

  • Sahin N (2003) Oxalotrophic bacteria. Res Microbiol 154:399–407

    Article  CAS  Google Scholar 

  • Sahin N (2005) Isolation and characterization of a diazotrophic, oxalate-oxidizing bacterium from sour grass (oxalis pes-caprae L.). Res Microbiol 156:452–456

    Article  CAS  Google Scholar 

  • Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  Google Scholar 

  • Siller H, Rainey FA, Stackebrandt E et al (1996) Isolation and characterization of a new gram-negative, acetone-degrading, nitrate-reducing bacterium from soil, Paracoccus solventivorans sp. nov. Int J Syst Bacteriol 46:1125–1130

    CAS  Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F et al (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  CAS  Google Scholar 

  • Urakami T, Tamaoka J, Suzuki K et al (1989) Paracoccus alcaliphilus sp. nov., an alkaliphilic and facultatively methylotrophic bacterium. Int J Syst Bacteriol 39:116–121

    Google Scholar 

  • Urakami T, Araki H, Oyanagi H et al (1990) Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N,N-dimethylformamide. Int J Syst Bacteriol 40:287–291

    Article  CAS  Google Scholar 

  • Wanasundera JP, Ravindran G (1994) Nutritional assessment of yam (Dioscorea alata) tubers. Plant Foods Hum Nutr 46:33–39

    Article  CAS  Google Scholar 

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Acknowledgements

This work was financially supported by University Grants Commission, India. Anbazhagan Kolandaswamy acknowledges University Grants Commission (UGC) for the fellowship. The authors wish to thank Dr G. Kulandaivelu for Atomic Force Micrograph.

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Correspondence to Govindan Sadasivam Selvam.

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Anbazhagan, K., Edward Raja, C. & Selvam, G.S. Oxalotrophic Paracoccus alcaliphilus isolated from Amorphophallus sp. rhizoplane. World J Microbiol Biotechnol 23, 1529–1535 (2007). https://doi.org/10.1007/s11274-007-9397-4

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