Skip to main content
Log in

Diversity of Sinorhizobium Meliloti and S. medicae Nodulating Medicago Truncatula According to Host and Soil Origins

  • Published:
World Journal of Microbiology and Biotechnology Aims and scope Submit manuscript

Summary

The model legume Medicago truncatula was used to trap natural populations of Sinorhizobium meliloti and Sinorhizobium medicae in Tunisian soils to explore their genetic diversity. About 155 Sinorhizobium isolates were trapped from a combination of three soils and four Medicago truncatula populations in order to analyse soil and plant population effects on nodulating Sinorhizobium diversity. The species assignment was done according to the restriction fragment length polymorphism analysis of polymerase chain reaction (PCR/RFLP) of 16S rRNA genes and their infraspecific genetic diversity was assessed with the repetitive extragenic palindromic-polymerase chain reaction (REP-PCR) technique. It appeared that the trapped bacteria were clustered according to the soil of origin, particularly Sinorhizobium medicae isolates. However, regarding the plant population effect, it appeared that no major clustering tendency could be suggested even if the Bulla Regia and Soliman Medicago truncatula populations appeared to nodulate together specific Sinorhizobium medicae genotypes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • E.E. Andronov M.L. Roumyantseva V.V. Sagoulenko B.V. Simarov (1999) ArticleTitleEffect of the host plant on the genetic diversity of a natural population of Sinorhizobium meliloti Russian Journal of Genetics 35 1169–1176 Occurrence Handle1:CAS:528:DyaK1MXntlKjt7g%3D

    CAS  Google Scholar 

  • E.E. Andronov M.L. Roumyantseva B.V. Simarov (2001) ArticleTitleGenetic diversity of a natural population of Sinorhizobium meliloti revealed in analysis of cryptic plasmids and ISRm2011-2 fingerprints Russian Journal of Genetics 37 494–499 Occurrence Handle10.1023/A:1016658429756 Occurrence Handle1:CAS:528:DC%2BD3MXktFyhtrY%3D

    Article  CAS  Google Scholar 

  • J.E. Beringer (1974) ArticleTitleR factor transfer in Rhizobium leguminosarum Journal of General Microbiology 84 188–198 Occurrence Handle1:STN:280:DyaE2M%2FmtFeltA%3D%3D

    CAS  Google Scholar 

  • E.G. Biondi E. Pilli E. Giuntini M.L. Roumiantseva E.E. Andronov O.P. Onichtchouk O.N. Kurchak B.V. Simarov N.I. Dzyubenko A. Mengoni M. Bazzicalupo (2003) ArticleTitleGenetic relationship of Sinorhizobium meliloti and Sinorhizobium medicae strains isolated from Caucasian region FEMS Microbiology Letters 220 207–213 Occurrence Handle10.1016/S0378-1097(03)00098-3 Occurrence Handle1:CAS:528:DC%2BD3sXisV2mur4%3D

    Article  CAS  Google Scholar 

  • Bottomley, P.J. 1992 Ecology of Bradyrhizobium and Rhizobium. In Biological Nitrogen Fixation, pp. 293–348 eds. G. Stacey & Evans R.H., New York. Chapman and Hall. ISBN 0412024217.

  • E.S.P. Bromfield L.R. Barran R. Wheatcroft (1995) ArticleTitleRelative genetic structure of a population of Rhizobium meliloti isolated directly from soil and from nodules of alfalfa (Medicago sativa) and sweet clover (Melilotus alba) Molecular Ecology 4 183–188

    Google Scholar 

  • E.S.P. Bromfield G. Butler L.R. Barran (2001) ArticleTitleTemporal effects on the composition of a population of Sinorhizobium meliloti associated with Medicago sativa and Melilotus alba Canadian Journal of Microbiology 47 567–573 Occurrence Handle10.1139/cjm-47-6-567 Occurrence Handle1:CAS:528:DC%2BD3MXlt1OksLw%3D

    Article  CAS  Google Scholar 

  • B. Brunel S. Rome R. Ziani J.C. Cleyet-Marel (1996) ArticleTitleComparison of nucleotide diversity and symbiotic properties of Rhizobium meliloti populations from annual Medicago species FEMS Microbiology Ecology 19 71–82 Occurrence Handle10.1016/0168-6496(95)00076-3 Occurrence Handle1:CAS:528:DyaK28Xhsleht74%3D

    Article  CAS  Google Scholar 

  • M. Carelli S. Gnocchi S. Fancelli A. Mengoni D. Paffetti C. Scotti M. Bazzicalupo (2000) ArticleTitleGenetic Diversity and Dynamics of Sinorhizobium meliloti Populations Nodulating Different Alfalfa Cultivars in Italian Soils Applied and Environmental Microbiology 66 4785–4789 Occurrence Handle10.1128/AEM.66.11.4785-4789.2000 Occurrence Handle1:CAS:528:DC%2BD3cXnvFyrtL4%3D

    Article  CAS  Google Scholar 

  • H.L.C. Coutinho V.M. Oliveira A. Lovato A.H.N. Maia G.P. Manfio (1999) ArticleTitleEvaluation of the diversity of rhizobia in Brazilian agricultural soils cultivated with soybeans Applied Soil Ecology 13 159–167 Occurrence Handle10.1016/S0929-1393(99)00031-1

    Article  Google Scholar 

  • F.J. De Bruijn (1992) ArticleTitleUse of repetitive sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria Applied and Environmental Microbiology 58 2180–2187 Occurrence Handle1:CAS:528:DyaK38XltVGhtbs%3D

    CAS  Google Scholar 

  • D.H. Demezas T.B. Reardon J.M. Watson A.H. Gibson (1991) ArticleTitleGenetic diversity among Rhizobium leguminosarum bv. Trifolii strains revealed by allozyme and restriction fragment polymorphism analyses Applied and Environmental Microbiology 57 3489–3495 Occurrence Handle1:CAS:528:DyaK38XotVansw%3D%3D

    CAS  Google Scholar 

  • L. Excoffier P.E. Smouse J.M. Quattro (1992) ArticleTitleAnalysis of molecular variance inferred from metric distance among DNA haplotypes: Application to human mitochondrial DNA restriction data Genetics 131 479–491 Occurrence Handle1:CAS:528:DyaK38XlsVCntro%3D

    CAS  Google Scholar 

  • J. Gao Z. Terefework W. Chen K. Lindstrom (2001) ArticleTitleGenetic diversity of rhizobia isolated from Astragalus adsurgens growing in different geographical regions of China Journal of Bacteriology 91 155–168 Occurrence Handle1:CAS:528:DC%2BD3MXmvVKltLg%3D

    CAS  Google Scholar 

  • M. Jebara R. Mhamdi M.E. Aouani R. Ghrir M. Mars (2001) ArticleTitleGenetic diversity of Sinorhizobium populations recovered from different Medicago varieties cultivated in Tunisian soils Canadian Journal of Microbiology 47 139–147 Occurrence Handle10.1139/cjm-47-2-139 Occurrence Handle1:CAS:528:DC%2BD3MXhs12gsrg%3D

    Article  CAS  Google Scholar 

  • L.D. Kuykendall S.M. Abdel-Waheb F.M. Hashem P. van Berkum (1994) ArticleTitleSymbiotic competence and genetic diversity of Rhizobium strains used as inoculants for alfalfa and berseem clover Letters in Applied Microbiology 19 477–482

    Google Scholar 

  • G. Labes A. Ulrich P. Lentzsch (1996) ArticleTitleInfluence of Bovine Slurry Deposition on the Structure of Nodulating Rhizobium leguminosarum bv. viciae Soil Populations in Natural Habitat Applied and Environmental Microbiology 62 1717–1722 Occurrence Handle1:CAS:528:DyaK28Xislylurs%3D

    CAS  Google Scholar 

  • G. Laguerre P. van Berkum N. Amarger D. Prevost (1997) ArticleTitleGenetic diversity of rhizobial symbionts isolated from legume species within the genera Astragalus, Oxutropis, and Onobrychis Applied and Environmental Microbiology 63 4748–4758 Occurrence Handle1:CAS:528:DyaK2sXnvV2rtrc%3D

    CAS  Google Scholar 

  • G. Laguerre P. Louvrier M.R. Allard N. Amarger (2003) ArticleTitleCompatibility of rhizobial genotypes within natural populations of Rhizobium leguminosarum biovar viciae for nodulation of host legumes Applied and Environmental Microbiology 69 2276–2283 Occurrence Handle10.1128/AEM.69.4.2276-2283.2003 Occurrence Handle1:CAS:528:DC%2BD3sXivFKqsb4%3D

    Article  CAS  Google Scholar 

  • Lesins, K.A. & Lesins, I. 1979 Genus Medicago (Leguminosae): A taxogenetic Study. pp. 46–53. The Hague, The Netherlands: Dr. W. Junk bv Publishers. ISBN 9-06193-598-9.

  • G.E. Oldroyd R. Geurts (2001) ArticleTitleMedicago truncatula, going where no plant has gone before Trends in Plant Science 6 552–554 Occurrence Handle10.1016/S1360-1385(01)02153-7 Occurrence Handle1:CAS:528:DC%2BD3MXpt1Ggs7s%3D

    Article  CAS  Google Scholar 

  • D. Paffetti C. Scotti S. Gnocchi S. Fancelli M. Bazzicalupo (1996) ArticleTitleGenetic diversity of an Italian Rhizobium meliloti population from different Medicago sativa varieties Applied and Environmental Microbiology 62 2279–2285 Occurrence Handle1:CAS:528:DyaK28XjvFGntrg%3D

    CAS  Google Scholar 

  • D. Paffetti F. Daguin S. Fancelli S. Gnocchi F. Lippi C. Scotti M. Bazzicalupo (1998) ArticleTitleInfluence of plant genotype on the selection of nodulating Sinorhizobium meliloti by Medicago sativa Antonie van Leeuwenhoek 73 3–8 Occurrence Handle10.1023/A:1000591719287 Occurrence Handle1:STN:280:DyaK1c3msV2rsQ%3D%3D

    Article  CAS  Google Scholar 

  • K.M. Palmer J.P.W. Young (2000) ArticleTitleHigher Diversity of Rhizobium leguminosarum Biovar viciae Populations in Arable Soils than in Grass Soils Applied and Environmental Microbiology 66 2445–2450 Occurrence Handle1:CAS:528:DC%2BD3cXjvFWnsrg%3D

    CAS  Google Scholar 

  • S. Rome B. Brunel P. Normand M.P. Fernandez J.C. Cleyet-Marel (1996a) ArticleTitleEvidence that two genomic species of Rhizobium are associated with Medicago truncatula Archives of Microbiology 165 285–288 Occurrence Handle10.1007/s002030050328 Occurrence Handle1:STN:280:DyaK283hsVKmuw%3D%3D

    Article  CAS  Google Scholar 

  • S. Rome M. Fernandez B. Brunel P. Normand J.C. Cleyet-Marel (1996b) ArticleTitleSinorhizobium medicae sp. nov., Isolated from Annual Medicago spp International Journal of Systematic Bacteriology 46 972–980 Occurrence Handle1:CAS:528:DyaK28XmsFyjurc%3D Occurrence Handle10.1099/00207713-46-4-972

    Article  CAS  Google Scholar 

  • M.L. Roumiantseva E.E. Andronov L.A. Sharypova T. Dammann-Kalinowski M. Keller J.P.W. Young B.V. Simarov (2002) ArticleTitleDiversity of Sinorhizobium meliloti from the Central Asian alfalfa gene center Applied and Environmental Microbiology 68 4694–4697 Occurrence Handle10.1128/AEM.68.9.4694-4697.2002 Occurrence Handle1:CAS:528:DC%2BD38XmvVCjtrw%3D

    Article  CAS  Google Scholar 

  • P. Thoquet M. Ghérardi E.P. Journet A. Kereszt J.M. Ané J.M. Prospéri T. Huguet (2002) ArticleTitleThe molecular genetic linkage map of the model legume Medicago truncatula: An essential tool for comparative legume genomics and the isolation of agronomically important genes BMC Plant Biology 2 1–22 Occurrence Handle10.1186/1471-2229-2-1

    Article  Google Scholar 

  • J. Versalovic T. Koeuth J.R. Lupski (1991) ArticleTitleDistribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes Nucleic Acids Research 19 6823–6831 Occurrence Handle1:CAS:528:DyaK38XnslelsA%3D%3D

    CAS  Google Scholar 

  • Vincent, J.M. 1970 A Manual for Practical Study of Root-nodule Bacteria. IBP handbook 15. Oxford, UK: Blackwell scientific publications. ISBN 632-06410-2.

  • H.H. Zahran (1999) ArticleTitleRhizobium–Legume symbiosis and nitrogen fixation under severe conditions and in an arid climate Microbiology and Molecular Biology Reviews 63 968–989 Occurrence Handle1:CAS:528:DC%2BD3cXjtVShsQ%3D%3D

    CAS  Google Scholar 

  • X. Zhang B. Kosier U.B. Priefer (2001) ArticleTitleGenetic diversity of indigenous Rhizobium leguminosarum bv. viciae isolates nodulating two different host plants during soil restoration with alfalfa Molecular Ecology 10 2297–2305 Occurrence Handle10.1046/j.0962-1083.2001.01364.x Occurrence Handle1:STN:280:DC%2BD3MrgslWhsg%3D%3D

    Article  CAS  Google Scholar 

  • K. Zribi R. Mhamdi T. Huguet M.E. Aouani (2004) ArticleTitleDistribution and genetic diversity of rhizobia nodulating natural populations of Medicago truncatula in tunisian soils Soil Biology and Biochemistry 36 903–908 Occurrence Handle10.1016/j.soilbio.2004.02.003 Occurrence Handle1:CAS:528:DC%2BD2cXktVemsL0%3D

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to M. E. Aouani.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Zribi, K., Mhamdi, R., Huguet, T. et al. Diversity of Sinorhizobium Meliloti and S. medicae Nodulating Medicago Truncatula According to Host and Soil Origins. World J Microbiol Biotechnol 21, 1009–1015 (2005). https://doi.org/10.1007/s11274-004-7653-4

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11274-004-7653-4

Keywords

Navigation