Skip to main content
Log in

Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions

  • Published:
Plant Molecular Biology Aims and scope Submit manuscript

Abstract

The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistance to insect herbivory, and resistance to pathogens. In addition, COI1 is also required for transcription of several genes induced by wounding or by JA. Here, we use microarray gene transcription profiling of wild type and coi1 mutant plants to examine the extent of the requirement of COI1 for JA-induced and wound-induced gene transcription. We show that COI1 is required for expression of approximately 84% of 212 genes induced by JA, and for expression of approximately 44% of 153 genes induced by wounding. Surprisingly, COI1 was also required for repression of 53% of 104 genes whose expression was suppressed by JA, and for repression of approximately 46% of 83 genes whose expression was suppressed by wounding. These results indicate that COI1 plays a pivotal role in wound- and JA signalling.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • J.P. Anderson E. Badruzsaufari P.M. Schenk J.M. Manners O.J. Desmond C. Ehlert D.J. Maclean P.R. Ebert K. Kazan (2004) ArticleTitleAntagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance in Arabidopsis Plant Cell 16 3460–3479 Occurrence Handle1:CAS:528:DC%2BD2MXhtVKrtA%3D%3D Occurrence Handle15548743 Occurrence Handle535886 Occurrence Handle10.1105/tpc.104.025833

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • P. Armengaud R. Breitling A. Amtmann (2004) ArticleTitleThe potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling Plant Physiol. 136 2556–2576 Occurrence Handle1:CAS:528:DC%2BD2cXnvFOrurs%3D Occurrence Handle15347784 Occurrence Handle523322 Occurrence Handle10.1104/pp.104.046482

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • S. Aubourg A. Lecharny J. Bohlmann (2002) ArticleTitleGenomic analysis of the terpenoid synthase (AtTPS) gene family of Arabidopsis thaliana Mol. Genet. Genomics 267 730–745 Occurrence Handle1:CAS:528:DC%2BD38Xnsl2kurg%3D Occurrence Handle12207221 Occurrence Handle10.1007/s00438-002-0709-y

    Article  CAS  PubMed  Google Scholar 

  • E. Bell J.E. Mullet (1993) ArticleTitleCharacterization of an Arabidopsis lipoxygenase gene responsive to methyl jasmonate and wounding Plant Physiol. 103 1133–1137 Occurrence Handle1:CAS:528:DyaK2cXht12msro%3D Occurrence Handle8290626 Occurrence Handle159098 Occurrence Handle10.1104/pp.103.4.1133

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • J. Bender G.R. Fink (1998) ArticleTitleA Myb homologue, ATR1, activates tryptophan gene expression in Arabidopsis Proc. Natl. Acad. Sci. USA 95 5655–5660 Occurrence Handle1:CAS:528:DyaK1cXjtFWkurs%3D Occurrence Handle9576939 Occurrence Handle10.1073/pnas.95.10.5655 Occurrence Handle20434

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • C.E. Benedetti D. Xie J.G. Turner (1995) ArticleTitleCoi1-dependent expression of an Arabidopsis vegetative storage protein in flowers and siliques and in response to coronatine or methyl jasmonate Plant Physiol. 109 567–572 Occurrence Handle1:CAS:528:DyaK2MXoslOqt78%3D Occurrence Handle7480347 Occurrence Handle157621 Occurrence Handle10.1104/pp.109.2.567

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • C.E. Benedetti P. Arruda (2002) ArticleTitleAltering the expression of the chlorophyllase gene ATHCOR1 in transgenic Arabidopsis caused changes in the chlorophyll-to-chlorophyllide ratio Plant Physiol. 128 1255–1263 Occurrence Handle1:CAS:528:DC%2BD38XivFylur0%3D Occurrence Handle11950974 Occurrence Handle154253 Occurrence Handle10.1104/pp.010813

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Y. Benjamini Y. Hochberg (1995) ArticleTitleControlling the false discovery rate: a practical and powerful approach to multiple testing J. Roy. Stat. Soc. B 57 289–300

    Google Scholar 

  • M.A. Birkett C.A. Campbell K. Chamberlain E. Guerrieri A.J. Hick J.L. Martin M. Matthes J.A. Napier J. Pettersson J.A. Pickett G.M. Poppy E.M. Pow B.J. Pye L.E. Smart G.H. Wadhams L.J. Wadhams C.M. Woodcock (2000) ArticleTitleNew roles for cis-jasmone as an insect semiochemical and in plant defense Proc. Natl. Acad. Sci. USA 97 9329–9334 Occurrence Handle1:CAS:528:DC%2BD3cXls12ktrY%3D Occurrence Handle10900270 Occurrence Handle10.1073/pnas.160241697 Occurrence Handle16867

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • H. Bohlmann A. Vignutelli B. Hilpert O. Miersch C. Wasternack K. Apel (1998) ArticleTitleWounding and chemicals induce expression of the Arabidopsis thaliana gene Thi2.1, encoding a fungal defense thionin, via the octadecanoid pathway FEBS Lett. 437 281–286 Occurrence Handle1:CAS:528:DyaK1cXntVyhtL4%3D Occurrence Handle9824308 Occurrence Handle10.1016/S0014-5793(98)01251-4

    Article  CAS  PubMed  Google Scholar 

  • J.O. Borevitz Y. Xia J. Blount R.A. Dixon C. Lamb (2000) ArticleTitleActivation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis Plant Cell 12 2383–2394 Occurrence Handle1:CAS:528:DC%2BD3MXns1ShtQ%3D%3D Occurrence Handle11148285 Occurrence Handle102225

    CAS  PubMed  PubMed Central  Google Scholar 

  • G. Brader E. Tas E.T. Palva (2001) ArticleTitleJasmonate-dependent induction of indole glucosinolates in Arabidopsis by culture filtrates of the nonspecific pathogen Erwinia carotovora Plant Physiol. 126 849–860 Occurrence Handle1:CAS:528:DC%2BD3MXks1GmsL0%3D Occurrence Handle11402212 Occurrence Handle111174 Occurrence Handle10.1104/pp.126.2.849

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • A.N. Capella M. Menossi P. Arruda C.E. Benedetti (2001) ArticleTitleCOI1 affects myrosinase activity and controls the expression of two flower-specific myrosinase-binding protein homologues in Arabidopsis Planta 213 691–699 Occurrence Handle1:CAS:528:DC%2BD3MXms1OrsLs%3D Occurrence Handle11678272 Occurrence Handle10.1007/s004250100548

    Article  CAS  PubMed  Google Scholar 

  • W. Chen N.J. Provart J. Glazebrook F. Katagiri H.S. Chang T. Eulgem F. Mauch S. Luan G. Zou S.A. Whitham P.R. Budworth Y. Tao Z. Xie X. Chen S. Lam J.A. Kreps J.F. Harper A. Si-Ammour B. Mauch-Mani M. Heinlein K. Kobayashi T. Hohn J.L. Dangl X. Wang T. Zhu (2002) ArticleTitleExpression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses Plant Cell 14 559–574 Occurrence Handle1:CAS:528:DC%2BD38XivVegt7g%3D Occurrence Handle11910004 Occurrence Handle150579 Occurrence Handle10.1105/tpc.010410

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • F. Chen D. Tholl J.C. D’Auria A. Farooq E. Pichersky J. Gershenzon (2003) ArticleTitleBiosynthesis and emission of terpenoid volatiles from Arabidopsis flowers Plant Cell 15 481–494 Occurrence Handle1:CAS:528:DC%2BD3sXhtlOmtbc%3D Occurrence Handle12566586 Occurrence Handle141215 Occurrence Handle10.1105/tpc.007989

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Y.H. Cheong H.S. Chang R. Gupta X. Wang T. Zhu S. Luan (2002) ArticleTitleTranscriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis Plant Physiol. 129 661–677 Occurrence Handle1:CAS:528:DC%2BD38XkvV2jtrk%3D Occurrence Handle12068110 Occurrence Handle161692 Occurrence Handle10.1104/pp.002857

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • R.A. Creelman M.L. Tierney J.E. Mullet (1992) ArticleTitleJasmonic acid/methyl jasmonate accumulate in wounded soybean hypocotyls and modulate wound gene expression Proc. Natl. Acad. Sci. USA 89 4938–4941 Occurrence Handle1:CAS:528:DyaK38XksVCrtr0%3D Occurrence Handle1594598 Occurrence Handle10.1073/pnas.89.11.4938 Occurrence Handle49203

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • A. Devoto M. Nieto-Rostro D. Xie C. Ellis R. Harmston E. Patrick J. Davis L. Sherratt M. Coleman J.G. Turner (2002) ArticleTitleCOI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis Plant J. 32 457–466 Occurrence Handle1:CAS:528:DC%2BD38Xps1Krurs%3D Occurrence Handle12445118 Occurrence Handle10.1046/j.1365-313X.2002.01432.x

    Article  CAS  PubMed  Google Scholar 

  • A. Devoto J.G. Turner (2003) ArticleTitleRegulation of jasmonate-mediated plant responses in Arabidopsis Ann. Bot. (Lond) 92 329–337 Occurrence Handle1:CAS:528:DC%2BD3sXnvVShsL4%3D Occurrence Handle10.1093/aob/mcg151

    Article  CAS  Google Scholar 

  • A. Devoto J.G. Turner (2005) ArticleTitleJasmonate-regulated Arabidopsis stress signalling network Phys. Plant 123 161–172 Occurrence Handle1:CAS:528:DC%2BD2MXit1Wiu74%3D Occurrence Handle10.1111/j.1399-3054.2004.00418.x

    Article  CAS  Google Scholar 

  • M.B. Eisen P.T. Spellman P.O. Brown D. Botstein (1998) ArticleTitleCluster analysis and display of genome-wide expression patterns Proc. Natl. Acad. Sci. USA 95 14863–14868 Occurrence Handle1:CAS:528:DyaK1cXotVGmurk%3D Occurrence Handle9843981 Occurrence Handle10.1073/pnas.95.25.14863 Occurrence Handle24541

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • C. Ellis J.G. Turner (2001) ArticleTitleThe Arabidopsis mutant cev1 has constitutively active jasmonate and ethylene signal pathways and enhanced resistance to pathogens Plant Cell 13 1025–1033 Occurrence Handle1:CAS:528:DC%2BD3MXktVSlurc%3D Occurrence Handle11340179 Occurrence Handle135553 Occurrence Handle10.1105/tpc.13.5.1025

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • C. Ellis J.G. Turner (2002) ArticleTitleA conditionally fertile coi1 allele indicates cross-talk between plant hormone signalling pathways in Arabidopsis thaliana seeds and young seedlings Planta 215 549–556 Occurrence Handle1:CAS:528:DC%2BD38XlvVKhtLc%3D Occurrence Handle12172836 Occurrence Handle10.1007/s00425-002-0787-4

    Article  CAS  PubMed  Google Scholar 

  • C. Ellis I. Karafyllidis J.G. Turner (2002) ArticleTitleConstitutive activation of jasmonate signaling in an Arabidopsis mutant correlates with enhanced resistance to Erysiphe cichoracearum, Pseudomonas syringae, and Myzus persicae Mol. Plant–Microbe. Interact. 15 1025–1030 Occurrence Handle1:CAS:528:DC%2BD38XnvFGjtLw%3D Occurrence Handle12437300 Occurrence Handle10.1094/MPMI.2002.15.10.1025

    Article  CAS  PubMed  Google Scholar 

  • M. Fabbri G. Delp O. Schmidt U. Theopold (2000) ArticleTitleAnimal and plant members of a gene family with similarity to alkaloid-synthesizing enzymes Biochem. Biophys. Res. Commun. 271 191–196 Occurrence Handle1:CAS:528:DC%2BD3cXis1agsbo%3D Occurrence Handle10777701 Occurrence Handle10.1006/bbrc.2000.2598

    Article  CAS  PubMed  Google Scholar 

  • P.J. Facchini D.A. Bird B. St-Pierre (2004) ArticleTitleCan Arabidopsis make complex alkaloids? Trend. Plant Sci. 9 116–122 Occurrence Handle1:CAS:528:DC%2BD2cXhslCjs7c%3D Occurrence Handle10.1016/j.tplants.2004.01.004

    Article  CAS  Google Scholar 

  • J. Faldt G. Arimura J. Gershenzon J. Takabayashi J. Bohlmann (2003) ArticleTitleFunctional identification of AtTPS03 as (E)-beta-ocimene synthase: a monoterpene synthase catalyzing jasmonate- and wound-induced volatile formation in Arabidopsis thaliana Planta 216 745–751 Occurrence Handle1:CAS:528:DC%2BD3sXivFSksL8%3D Occurrence Handle12624761 Occurrence Handle10.1007/s00425-002-0924-0

    Article  CAS  PubMed  Google Scholar 

  • E.E. Farmer C.A. Ryan (1990) ArticleTitleInterplant communication: airborne methyl jasmonate induces synthesis of proteinase inhibitors in plant leaves Proc. Natl. Acad. Sci. USA 87 7713–7716 Occurrence Handle1:CAS:528:DyaK3MXjs1Sm Occurrence Handle11607107 Occurrence Handle10.1073/pnas.87.19.7713 Occurrence Handle54818

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • S. Feng L. Ma X. Wang D. Xie S.P. Dinesh-Kumar N. Wei X.W. Deng (2003) ArticleTitleThe COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses Plant Cell 15 1083–1094 Occurrence Handle1:CAS:528:DC%2BD3sXjvV2htLs%3D Occurrence Handle12724535 Occurrence Handle153718 Occurrence Handle10.1105/tpc.010207

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • B. Feys C.E. Benedetti C.N. Penfold J.G. Turner (1994) ArticleTitle Arabidopsis mutants selected for resistance to the phytotoxin coronatine are male sterile, insensitive to methyl jasmonate, and resistant to a bacterial pathogen Plant Cell 6 751–759 Occurrence Handle1:CAS:528:DyaK2cXltlSisLY%3D Occurrence Handle12244256 Occurrence Handle160473 Occurrence Handle10.2307/3869877

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • B.J. Feys J.E. Parker (2000) ArticleTitleInterplay of signaling pathways in plant disease resistance Trend. Genet. 16 449–455 Occurrence Handle1:CAS:528:DC%2BD3cXotVSrsLc%3D Occurrence Handle10.1016/S0168-9525(00)02107-7

    Article  CAS  Google Scholar 

  • T. Genoud M.B. Trevino Santa Cruz J.P. Metraux (2001) ArticleTitleNumeric simulation of plant signaling networks Plant Physiol. 126 1430–1437 Occurrence Handle1:CAS:528:DC%2BD3MXlvFOjur0%3D Occurrence Handle11500542 Occurrence Handle117143 Occurrence Handle10.1104/pp.126.4.1430

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • J. Glazebrook W. Chen B. Estes H.S. Chang C. Nawrath J.P. Metraux T. Zhu F. Katagiri (2003) ArticleTitleTopology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping Plant J. 34 217–228 Occurrence Handle1:CAS:528:DC%2BD3sXjvFOgt7g%3D Occurrence Handle12694596 Occurrence Handle10.1046/j.1365-313X.2003.01717.x

    Article  CAS  PubMed  Google Scholar 

  • R.C. Gentleman V.J. Carey D.M. Bates B. Bolstad M. Dettling S. Dudoit B. Ellis L. Gautier Y. Ge J. Gentry K. Hornik T. Hothorn W. Huber S. Iacus R. Irizarry F. Leisch C. Li M. Maechler A.J. Rossini G. Sawitzki C. Smith G. Smyth L. Tierney J.Y.H. Yang J. Zhang (2004) ArticleTitleBioconductor: Open software development for computational biology and bioinformatics Genome. Biol. 5 R80 Occurrence Handle15461798 Occurrence Handle545600 Occurrence Handle10.1186/gb-2004-5-10-r80

    Article  PubMed  PubMed Central  Google Scholar 

  • G.F.V. Glonek P.J. Solomon (2004) ArticleTitleFactorial and time course designs for cDNA microarray experiments Biostatistics 5 89–111 Occurrence Handle1:STN:280:DC%2BD2c%2Fktl2htg%3D%3D Occurrence Handle14744830 Occurrence Handle10.1093/biostatistics/5.1.89

    Article  CAS  PubMed  Google Scholar 

  • H. Gundlach M.J. Muller T.M. Kutchan M.H. Zenk (1992) ArticleTitleJasmonic acid is a signal transducer in elicitor-induced plant cell cultures Proc. Natl. Acad. Sci. USA 89 2389–2393 Occurrence Handle1:CAS:528:DyaK38XisFagsb8%3D Occurrence Handle11607285 Occurrence Handle10.1073/pnas.89.6.2389 Occurrence Handle48663

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • S.L. Harmer J.B. Hogenesch M. Straume H.S. Chang B. Han T. Zhu X. Wang J.A. Kreps S.A. Kay (2000) ArticleTitleOrchestrated transcription of key pathways in Arabidopsis by the circadian clock Science 290 2110–2113 Occurrence Handle1:CAS:528:DC%2BD3cXptVyisrw%3D Occurrence Handle11118138 Occurrence Handle10.1126/science.290.5499.2110

    Article  CAS  PubMed  Google Scholar 

  • J.Y. Kang H.I. Choi M.Y. Im S.Y. Kim (2002) ArticleTitle Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling Plant Cell 14 343–357 Occurrence Handle1:CAS:528:DC%2BD38XisVKgtbs%3D Occurrence Handle11884679 Occurrence Handle152917 Occurrence Handle10.1105/tpc.010362

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • A.P. Kloek M.L. Verbsky S.B. Sharma J.E. Schoelz J. Vogel D.F. Klessig B.N. Kunkel (2001) ArticleTitleResistance to Pseudomonas syringae conferred by an Arabidopsis thaliana coronatine-insensitive (coi1) mutation occurs through two distinct mechanisms Plant J. 26 509–522 Occurrence Handle1:CAS:528:DC%2BD3MXlvVKhsLw%3D Occurrence Handle11439137 Occurrence Handle10.1046/j.1365-313x.2001.01050.x

    Article  CAS  PubMed  Google Scholar 

  • H.D. Kranz M. Denekamp R. Greco H. Jin A. Leyva R.C. Meissner K. Petroni A. Urzainqui M. Bevan C. Martin S. Smeekens C. Tonelli J. Paz-Ares B. Weisshaar (1998) ArticleTitleTowards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana Plant J. 16 263–276 Occurrence Handle1:CAS:528:DyaK1cXnvFKqsbc%3D Occurrence Handle9839469 Occurrence Handle10.1046/j.1365-313x.1998.00278.x

    Article  CAS  PubMed  Google Scholar 

  • R. Ihaka R. Gentleman (1996) ArticleTitleR: A language for data analysis and graphics J. Comput. Graph. Stat. 5 299–314

    Google Scholar 

  • D. Laudert E.W. Weiler (1998) ArticleTitleAllene oxide synthase: a major control point in Arabidopsis thaliana octadecanoid signalling Plant J. 15 675–684 Occurrence Handle1:CAS:528:DyaK1cXmsV2nurs%3D Occurrence Handle9778849 Occurrence Handle10.1046/j.1365-313x.1998.00245.x

    Article  CAS  PubMed  Google Scholar 

  • Y.H. Lee J.Y. Chun (1998) ArticleTitleA new homeodomain-leucine zipper gene from Arabidopsis thaliana induced by water stress and abscisic acid treatment Plant Mol. Biol. 37 377–384 Occurrence Handle1:CAS:528:DyaK1cXjtlaltbc%3D Occurrence Handle9617808 Occurrence Handle10.1023/A:1006084305012

    Article  CAS  PubMed  Google Scholar 

  • J. Li G. Brader E.T. Palva (2004) ArticleTitleThe WRKY70 transcription factor: a node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense Plant Cell 16 319–331 Occurrence Handle1:CAS:528:DC%2BD2cXhsFKisrY%3D Occurrence Handle14742872 Occurrence Handle341906 Occurrence Handle10.1105/tpc.016980

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • E. Liscum J.W. Reed (2002) ArticleTitleGenetics of Aux/IAA and ARF action in plant growth and development Plant Mol. Biol. 49 387–400 Occurrence Handle1:CAS:528:DC%2BD38XktlSqt7k%3D Occurrence Handle12036262 Occurrence Handle10.1023/A:1015255030047

    Article  CAS  PubMed  Google Scholar 

  • O. Lorenzo R. Piqueras J.J. Sanchez-Serrano R. Solano (2003) ArticleTitleETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense Plant Cell 15 165–178 Occurrence Handle1:CAS:528:DC%2BD3sXmtFemsw%3D%3D Occurrence Handle12509529 Occurrence Handle143489 Occurrence Handle10.1105/tpc.007468

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • O. Lorenzo J.M. Chico J.J. Sanchez-Serrano R. Solano (2004) ArticleTitleJasmonate-insensitive1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defence responses in Arabidopsis Plant Cell 16 1938–50 Occurrence Handle1:CAS:528:DC%2BD2cXmtFSqtbw%3D Occurrence Handle15208388 Occurrence Handle514172 Occurrence Handle10.1105/tpc.022319

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • A. Mandaokar V. Dinesh Kumar M. Amway J. Browse (2003) ArticleTitleMicroarray and differential display identify genes involved in jasmonate-dependent anther development Plant Mol. Biol. 52 775–786 Occurrence Handle1:CAS:528:DC%2BD3sXmtVentb0%3D Occurrence Handle13677466 Occurrence Handle10.1023/A:1025045217859

    Article  CAS  PubMed  Google Scholar 

  • M. McConn J. Browse (1996) ArticleTitleThe critical requirement for linolenic acid is pollen development, not photosynthesis, in an Arabidopsis Mutant Plant Cell 8 403–416 Occurrence Handle1:CAS:528:DyaK28XitVKmtLs%3D Occurrence Handle12239389 Occurrence Handle161109 Occurrence Handle10.2307/3870321

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • M. McConn R.A. Creelman E. Bell J.E. Mullet J. Browse (1997) ArticleTitleJasmonate is essential for insect defense in Arabidopsis Proc. Natl. Acad. Sci. USA 94 5473–5477 Occurrence Handle1:CAS:528:DyaK2sXjtleltr4%3D Occurrence Handle11038546 Occurrence Handle10.1073/pnas.94.10.5473 Occurrence Handle24703

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • F.L. Menke A. Champion J.W. Kijne J. Memelink (1999) ArticleTitleA novel jasmonate- and elicitor-responsive element in the periwinkle secondary metabolite biosynthetic gene Str interacts with a jasmonate- and elicitor-inducible AP2-domain transcription factor, ORCA2 Embo. J. 18 4455–4463 Occurrence Handle1:CAS:528:DyaK1MXlslWnsr4%3D Occurrence Handle10449411 Occurrence Handle1171520 Occurrence Handle10.1093/emboj/18.16.4455

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • M.D. Mikkelsen C.H. Hansen U. Wittstock B.A. Halkier (2000) ArticleTitleCytochrome P450 CYP79B2 from Arabidopsis catalyzes the conversion of tryptophan to indole-3-acetaldoxime, a precursor of indole glucosinolates and indole-3-acetic acid J.␣Biol. Chem. 275 33712–33717 Occurrence Handle1:CAS:528:DC%2BD3cXnvVyjsbs%3D Occurrence Handle10922360 Occurrence Handle10.1074/jbc.M001667200

    Article  CAS  PubMed  Google Scholar 

  • P. Nagpal L.M. Walker J.C. Young A. Sonawala C. Timpte M. Estelle J.W. Reed (2000) ArticleTitleAXR2 encodes a member␣of␣the Aux/IAA protein family Plant Physiol. 123 563–574 Occurrence Handle1:CAS:528:DC%2BD3cXktlWntLk%3D Occurrence Handle10859186 Occurrence Handle59024 Occurrence Handle10.1104/pp.123.2.563

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • M. Orozco-Cardenas J. Narvaez-Vasquez C. Ryan (2001) ArticleTitleHydrogen peroxide acts as a second messenger for the induction of defense genes in tomato plants in response to wounding, systemin, and methyl jasmonate Plant Cell 13 179–191 Occurrence Handle1:CAS:528:DC%2BD3MXjslCrt7w%3D Occurrence Handle11158538 Occurrence Handle102208 Occurrence Handle10.1105/tpc.13.1.179

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • K. Overmyer H. Tuominen R. Kettunen C. Betz C. Langebartels H. Sandermann J. Kangasjarvi (2000) ArticleTitleOzone-sensitive Arabidopsis rcd1 mutant reveals opposite roles for ethylene and jasmonate signaling pathways in regulating superoxide-dependent cell death Plant Cell 12 1849–1862 Occurrence Handle1:CAS:528:DC%2BD3cXotFaisL8%3D Occurrence Handle11041881 Occurrence Handle149124 Occurrence Handle10.1105/tpc.12.10.1849

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • I.A. Penninckx B.P. Thomma A. Buchala J.P. Metraux W.F. Broekaert (1998) ArticleTitleConcomitant activation of jasmonate and ethylene response pathways is required for induction of␣a plant defensin gene in Arabidopsis Plant Cell 10 2103–2113 Occurrence Handle1:CAS:528:DyaK1MXhvV2msQ%3D%3D Occurrence Handle9836748 Occurrence Handle143966 Occurrence Handle10.1105/tpc.10.12.2103

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • C.M. Pieterse S.C. Wees Particlevan J.A. Pelt Particlevan M. Knoester R. Laan H. Gerrits P.J. Weisbeek L.C. Loon Particlevan (1998) ArticleTitleA novel signaling pathway controlling induced systemic resistance in Arabidopsis Plant Cell 10 1571–1580 Occurrence Handle1:CAS:528:DyaK1cXmsVKiu7Y%3D Occurrence Handle9724702 Occurrence Handle144073 Occurrence Handle10.1105/tpc.10.9.1571

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • D.P. Puthoff D. Nettleton S.R. Rodermel T.J. Baum (2003) ArticleTitle Arabidopsis gene expression changes during cyst nematode parasitism revealed by statistical analyses of microarray expression profiles Plant J. 33 911–921 Occurrence Handle1:CAS:528:DC%2BD3sXis1GlsLw%3D Occurrence Handle12609032 Occurrence Handle10.1046/j.1365-313X.2003.01677.x

    Article  CAS  PubMed  Google Scholar 

  • F. Quattrocchio J.F. Wing K. Woude Particlevan der J.N. Mol R. Koes (1998) ArticleTitleAnalysis of bHLH and MYB domain proteins: species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes Plant J. 13 475–488 Occurrence Handle1:CAS:528:DyaK1cXitFyrsrc%3D Occurrence Handle9680994 Occurrence Handle10.1046/j.1365-313X.1998.00046.x

    Article  CAS  PubMed  Google Scholar 

  • M.V. Rao H. Lee R.A. Creelman J.E. Mullet K.R. Davis (2000) ArticleTitleJasmonic acid signaling modulates ozone-induced hypersensitive cell death Plant Cell 12 1633–1646 Occurrence Handle1:CAS:528:DC%2BD3cXnsVyltrs%3D Occurrence Handle11006337 Occurrence Handle149075 Occurrence Handle10.1105/tpc.12.9.1633

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • L. Rask E. Andreasson B. Ekbom S. Eriksson B. Pontoppidan J. Meijer (2000) ArticleTitleMyrosinase: gene family evolution and herbivore defense in Brassicaceae Plant Mol. Biol. 42 93–113 Occurrence Handle1:CAS:528:DC%2BD3cXht1Grsr4%3D Occurrence Handle10688132 Occurrence Handle10.1023/A:1006380021658

    Article  CAS  PubMed  Google Scholar 

  • P. Reymond H. Weber M. Damond E.E. Farmer (2000) ArticleTitleDifferential gene expression in response to mechanical wounding and insect feeding in Arabidopsis Plant Cell 12 707–720 Occurrence Handle1:CAS:528:DC%2BD3cXjvFyhurk%3D Occurrence Handle10810145 Occurrence Handle139922 Occurrence Handle10.1105/tpc.12.5.707

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • P. Reymond N. Bodenhausen R.M. Poecke ParticleVan V. Krishnamurthy M. Dicke E.E. Farmer (2004) ArticleTitleA conserved transcript pattern in response to a specialist and a generalist herbivore Plant Cell 16 3132–3147 Occurrence Handle1:CAS:528:DC%2BD2cXhtVCjtLbI Occurrence Handle15494554 Occurrence Handle527203 Occurrence Handle10.1105/tpc.104.026120

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • S.C. Roberts M.L. Shuler (1997) ArticleTitleLarge-scale plant cell culture Curr. Opin. Biotechnol. 8 154–159 Occurrence Handle1:CAS:528:DyaK2sXisVyrtr0%3D Occurrence Handle9079728 Occurrence Handle10.1016/S0958-1669(97)80094-8

    Article  CAS  PubMed  Google Scholar 

  • E. Rojo E. Titarenko J. Leon S. Berger G. Vancanneyt J.J. Sanchez-Serrano (1998) ArticleTitleReversible protein phosphorylation regulates jasmonic acid-dependent and -independent wound signal transduction pathways in Arabidopsis thaliana Plant J. 13 153–165 Occurrence Handle1:CAS:528:DyaK1cXht1yku7k%3D Occurrence Handle9680973 Occurrence Handle10.1046/j.1365-313X.1998.00020.x

    Article  CAS  PubMed  Google Scholar 

  • E. Rojo J. Leon J.J. Sanchez-Serrano (1999) ArticleTitleCross-talk between wound signalling pathways determines local versus systemic gene expression in Arabidopsis thaliana Plant J. 20 135–142 Occurrence Handle1:CAS:528:DyaK1MXotFaitrc%3D Occurrence Handle10571873 Occurrence Handle10.1046/j.1365-313x.1999.00570.x

    Article  CAS  PubMed  Google Scholar 

  • P.M. Sanders P.Y. Lee C. Biesgen J.D. Boone T.P. Beals E.W. Weiler R.B. Goldberg (2000) ArticleTitleThe Arabidopsis DELAYED DEHISCENCE1 gene encodes an enzyme in the jasmonic acid synthesis pathway Plant Cell 12 1041–1061 Occurrence Handle1:CAS:528:DC%2BD3cXlslygtL4%3D Occurrence Handle10899973 Occurrence Handle149048 Occurrence Handle10.1105/tpc.12.7.1041

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • I. Sandorf H. Holländer-Czytko (2002) ArticleTitleJasmonate is involved in the induction of tyrosine aminotransferase and tocopherol biosynthesis in Arabidopsis thaliana Planta 216 173–179 Occurrence Handle1:CAS:528:DC%2BD38Xps1ehtb4%3D Occurrence Handle12430028 Occurrence Handle10.1007/s00425-002-0888-0

    Article  CAS  PubMed  Google Scholar 

  • Y. Sasaki E. Asamizu D. Shibata Y. Nakamura T. Kaneko K. Awai M. Amagai C. Kuwata T. Tsugane T. Masuda H. Shimada K. Takamiya H. Ohta S. Tabata (2001) ArticleTitleMonitoring of methyl jasmonate-responsive genes in Arabidopsis by cDNA macroarray: self-activation of jasmonic acid biosynthesis and crosstalk with other phytohormone signaling pathways DNA Res. 8 153–161 Occurrence Handle1:CAS:528:DC%2BD3MXms1Snt7k%3D Occurrence Handle11572481 Occurrence Handle10.1093/dnares/8.4.153

    Article  CAS  PubMed  Google Scholar 

  • P.M. Schenk K. Kazan I. Wilson J.P. Anderson T. Richmond S.C. Somerville JM Manners (2000) ArticleTitleCoordinated plant defense responses in Arabidopsis revealed by microarray analysis Proc. Natl. Acad. Sci. USA 97 11655–11660 Occurrence Handle1:CAS:528:DC%2BD3cXnsF2qtro%3D Occurrence Handle11027363 Occurrence Handle10.1073/pnas.97.21.11655 Occurrence Handle17256

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • T.T. Schmeller B. Latz-Bruning M. Wink (1997) ArticleTitleBiochemical activities of berberine, palmatine and sanguinarine mediating chemical defence against microorganisms and herbivores Phytochemistry 44 257–266 Occurrence Handle1:CAS:528:DyaK2sXmvVaqtw%3D%3D Occurrence Handle9004542 Occurrence Handle10.1016/S0031-9422(96)00545-6

    Article  CAS  PubMed  Google Scholar 

  • S.R. Searle (1971) Linear Models Wiley New York

    Google Scholar 

  • G.K. Smyth (2004) ArticleTitleLinear models and empirical Bayes methods for assessing differential expression in microarray experiments Stat. Appl. Genet. Mol. Biol. 3 1–25 Occurrence Handle10.2202/1544-6115.1027

    Article  Google Scholar 

  • P.E. Staswick G.Y. Yuen C.C. Lehman (1998) ArticleTitleJasmonate signaling mutants of Arabidopsis are susceptible to the soil fungus Pythium irregulare Plant J. 15 747–754 Occurrence Handle1:CAS:528:DyaK1cXntFCis7Y%3D Occurrence Handle9807813 Occurrence Handle10.1046/j.1365-313X.1998.00265.x

    Article  CAS  PubMed  Google Scholar 

  • P.E. Staswick I. Tiryaki M.L. Rowe (2002) ArticleTitleJasmonate response locus JAR1 and several related Arabidopsis genes encode enzymes of the firefly luciferase superfamily that show activity on jasmonic, salicylic, and indole-3-acetic acids in an assay for adenylation Plant Cell 14 1405–1415 Occurrence Handle1:CAS:528:DC%2BD38Xlt1alsbo%3D Occurrence Handle12084835 Occurrence Handle150788 Occurrence Handle10.1105/tpc.000885

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • A. Stintzi J. Browse (2000) ArticleTitleThe Arabidopsis male-sterile mutant, opr3, lacks the 12-oxophytodienoic acid reductase required for jasmonate synthesis Proc. Natl. Acad. Sci. USA 97 10625–10630 Occurrence Handle1:CAS:528:DC%2BD3cXms1CrtLo%3D Occurrence Handle10973494 Occurrence Handle10.1073/pnas.190264497 Occurrence Handle27075

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • H. Suzuki L. Achnine R. Xu S.P.T. Matsuda R.A. Dixon (2002) ArticleTitleA genomics approach to the early stages of triterpene saponin biosynthesis in Medicago truncatula Plant J. 32 1033–1048 Occurrence Handle1:CAS:528:DC%2BD3sXotFeqtA%3D%3D Occurrence Handle12492844 Occurrence Handle10.1046/j.1365-313X.2002.01497.x

    Article  CAS  PubMed  Google Scholar 

  • B.P. Thomma K. Eggermont I. Penninckx B. Mauch-Mani R. Vogelsang B.P.A. Cammue W.F. Broekaert (1998) ArticleTitleSeparate jasmonate-dependent and salicylate-dependent defense–response pathways in Arabidopsis are essential for resistance to distinct microbial pathogens Proc. Natl. Acad. Sci. USA 95 15107–15111 Occurrence Handle1:CAS:528:DyaK1cXotVGlsLc%3D Occurrence Handle9844023 Occurrence Handle10.1073/pnas.95.25.15107 Occurrence Handle24583

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • B.P. Thomma I. Nelissen K. Eggermont W.F. Broekaert (1999) ArticleTitleDeficiency in phytoalexin production causes enhanced susceptibility of Arabidopsis thaliana to the fungus Alternaria brassicicola Plant J. 1999 19 163–171 Occurrence Handle1:CAS:528:DyaK1MXmtlClsLg%3D

    CAS  Google Scholar 

  • E. Titarenko E. Rojo J. Leon J.J. Sanchez-Serrano (1997) ArticleTitleJasmonic acid-dependent and -independent signaling pathways control wound-induced gene activation in Arabidopsis thaliana Plant Physiol. 115 817–826 Occurrence Handle1:CAS:528:DyaK2sXntFSlsb4%3D Occurrence Handle9342878 Occurrence Handle158541 Occurrence Handle10.1104/pp.115.2.817

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • J. Tsuji E.P. Jackson D.A. Gage R. Hammerschmidt S.C. Somerville (1992) ArticleTitlePhytoalexin accumulation in Arabidopsis thaliana during the hypersensitive reaction to Pseudomonas syringae pv syringae Plant Physiol. 98 1304–1309 Occurrence Handle1:CAS:528:DyaK38XksVCkt7Y%3D Occurrence Handle16668792 Occurrence Handle1080349 Occurrence Handle10.1104/pp.98.4.1304

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • J.G. Turner C. Ellis A. Devoto (2002) ArticleTitleThe jasmonate signal pathway Plant Cell 14 IssueIDSuppl S153–S164 Occurrence Handle1:CAS:528:DC%2BD38XksV2hurg%3D Occurrence Handle12045275 Occurrence Handle151253 Occurrence Handle10.1105/tpc.000679

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • L. Fits Particlevan der J. Memelink (2000) ArticleTitleORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism Science 289 295–297 Occurrence Handle10.1126/science.289.5477.295 Occurrence Handle10894776

    Article  PubMed  Google Scholar 

  • R.M. Poecke ParticleVan M.A. Posthumus M. Dicke (2001) ArticleTitleHerbivore-induced volatile production by Arabidopsis thaliana leads to attraction of the parasitoid Cotesia rubecula: chemical, behavioral, and gene-expression analysis J. Chem. Ecol. 27 1911–28 Occurrence Handle11710601 Occurrence Handle10.1023/A:1012213116515

    Article  PubMed  Google Scholar 

  • E.W. Weiler T.M. Kutchan T. Gorba W. Brodschelm U. Niesel F. Bublitz (1994) ArticleTitleThe Pseudomonas phytotoxin coronatine mimics octadecanoid signalling molecules of higher plants FEBS Lett. 345 9–13 Occurrence Handle1:CAS:528:DyaK2cXlslalsbc%3D Occurrence Handle8194607 Occurrence Handle10.1016/0014-5793(94)00411-0

    Article  CAS  PubMed  Google Scholar 

  • L. Wernisch S.L. Kendall S. Soneji A. Wietzorrek T. Parish J. Hinds P.D. Butcher N.G. Stoker (2003) ArticleTitleAnalysis of whole-genome microarray replicates using mixed models Bioinformatics 19 53–61 Occurrence Handle1:CAS:528:DC%2BD3sXltF2nug%3D%3D Occurrence Handle12499293 Occurrence Handle10.1093/bioinformatics/19.1.53

    Article  CAS  PubMed  Google Scholar 

  • U. Wittstock B.A. Halkier (2002) ArticleTitleGlucosinolate research in the Arabidopsis era Trend. Plant Sci. 7 263–270 Occurrence Handle1:CAS:528:DC%2BD38XktFyns7s%3D Occurrence Handle10.1016/S1360-1385(02)02273-2

    Article  CAS  Google Scholar 

  • Z. Wu R.A. Irizarry R. Gentleman F. Martinez-Murillo F. Spencer (2004) ArticleTitleA model-based background adjustment for oligonucleotide expression arrays J. Am. Stat. Assoc. 99 909–917 Occurrence Handle10.1198/016214504000000683

    Article  Google Scholar 

  • D.X. Xie B.F. Feys S. James M. Nieto-Rostro J.G. Turner (1998) ArticleTitleCOI1: an Arabidopsis gene required for jasmonate-regulated defense and fertility Science 280 1091–1094 Occurrence Handle1:CAS:528:DyaK1cXjt1egsbk%3D Occurrence Handle9582125 Occurrence Handle10.1126/science.280.5366.1091

    Article  CAS  PubMed  Google Scholar 

  • Y. Xu P. Chang D. Liu M.L. Narasimhan K.G. Raghothama P.M. Hasegawa R.A. Bressan (1994) ArticleTitlePlant defense genes are synergistically induced by ethylene and methyl jasmonate Plant Cell 6 1077–1085 Occurrence Handle1:CAS:528:DyaK2cXmsFWgu78%3D Occurrence Handle12244267 Occurrence Handle160502 Occurrence Handle10.2307/3869886

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • L. Xu F. Liu E. Lechner P. Genschik W.L. Crosby H. Ma W. Peng D. Huang D. Xie (2002) ArticleTitleThe SCF(COI1) ubiquitin-ligase complexes are required for jasmonate response in Arabidopsis Plant Cell 14 1919–1935 Occurrence Handle1:CAS:528:DC%2BD38XmslCgsr0%3D Occurrence Handle12172031 Occurrence Handle151474 Occurrence Handle10.1105/tpc.003368

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Y. Zhao A.K. Hull N.R. Gupta K.A. Goss J. Alonso J.R. Ecker J. Normanly J. Chory J.L. Celenza (2002) ArticleTitleTrp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3 Genes Dev. 16 3100–3112 Occurrence Handle1:CAS:528:DC%2BD38XpsVamtbo%3D Occurrence Handle12464638 Occurrence Handle187496 Occurrence Handle10.1101/gad.1035402

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • T. Zhu X. Wang (2000) ArticleTitleLarge-scale profiling of the Arabidopsis transcriptome Plant Physiol. 124 1472–6 Occurrence Handle1:CAS:528:DC%2BD3MXitVWmsQ%3D%3D Occurrence Handle11115862 Occurrence Handle1539299 Occurrence Handle10.1104/pp.124.4.1472

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • T. Zhu P. Budworth B. Han D. Brown H-S. Chang G. Zou X. Wang (2001) ArticleTitleToward elucidating the global gene expression patterns of developing Arabidopsis: Parallel analysis of 8300 genes by a high-density oligonucleotide probe array Plant Physiol. Biochem. 39 221–242 Occurrence Handle1:CAS:528:DC%2BD3MXjtFajs7o%3D Occurrence Handle10.1016/S0981-9428(00)01234-1

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to John G. Turner.

Additional information

These authors contributed equally to the work; Torrey Mesa Research Institute was permanently closed

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Cite this article

Devoto, A., Ellis, C., Magusin, A. et al. Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions. Plant Mol Biol 58, 497–513 (2005). https://doi.org/10.1007/s11103-005-7306-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11103-005-7306-5

Keywords

Navigation