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Draft Genome Sequence of Kazachstania bovina Yeast Isolated from Human Infection

  • Mycopathologia GENOME
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Abstract

Kazachstania bovina is a yeast species from the K. telluris complex that has been recently involved in bloodstream infections. While yeast genomes from this complex have already been sequenced, K. bovina genome has not been published yet. Here is the first draft genome of K. bovina (CBS 16326).

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References

  1. Kurtzman CP, Robnett CJ, Ward JM, Brayton C, Gorelick P, Walsh TJ. Multigene phylogenetic analysis of pathogenic candida species in the Kazachstania (Arxiozyma) telluris complex and description of their ascosporic states as Kazachstania bovina sp. nov., K. heterogenica sp. nov., K. pintolopesii sp. nov., and K. slooffiae sp. nov. J Clin Microbiol. 2005;43:101–11. https://doi.org/10.1128/JCM.43.1.101-111.2005

  2. Brunet K, Minoza A, Rammaert B, Portet-Sulla V, Hubert F, Lorenzo J-C, et al. Invasive Candida bovina Infection, France. Emerg Infect Dis. 2020;26:626–7. https://doi.org/10.3201/eid2603.191371.

    Article  PubMed  PubMed Central  Google Scholar 

  3. Mercier V, Desnos-Ollivier M, Lamy A, Mahul M, Sasso M. Kazachstania slooffiae: an unexpected journey to a human pleural sample. J Mycol Med. 2021;31:101109. https://doi.org/10.1016/j.mycmed.2020.101109.

    Article  PubMed  Google Scholar 

  4. Kaeuffer C, Baldacini M, Ruge T, Ruch Y, Zhu Y-J, De Cian M, et al. Fungal infections caused by Kazachstania spp., Strasbourg, France, 2007–2020. Emerg Infect Dis. 2022;28:29–34. https://doi.org/10.3201/eid2801.211543.

    Article  CAS  PubMed  Google Scholar 

  5. Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, et al. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA. 2012;109:6241–6. https://doi.org/10.1073/pnas.1117018109.

    Article  PubMed  PubMed Central  Google Scholar 

  6. Morio F, O’Brien CE, Butler G. Draft genome sequence of the yeast Kazachstania telluris CBS 16338 Isolated from Forest Soil in Ireland. Mycopathologia. 2020;185:587–90. https://doi.org/10.1007/s11046-020-00449-6.

    Article  CAS  PubMed  Google Scholar 

  7. Davies CP, Arfken AM, Foster Frey J, Summers KL. Draft genome sequence of Kazachstania slooffiae, isolated from Postweaning Piglet Feces. Microbiol Resour Announc. 2021;10:e0019821. https://doi.org/10.1128/MRA.00198-21

  8. Akrong G, Chauzy A, Aranzana-Climent V, Lacroix M, Deroche L, Prouvensier L, et al. A new PKPD model to characterize the inoculum effect of Acinetobacter baumannii on polymyxin B in vitro. Antimicrob Agents Chemother. 2021;AAC0178921. https://doi.org/10.1128/AAC.01789-21

  9. Wick RR. Filtlong [Internet]. GitHub. 2017 [cited 2022 Feb 7]. Available from: https://github.com/rrwick/Filtlong/

  10. Kolmogorov M, Yuan J, Lin Y, Pevzner PA. Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol. 2019;37:540–6. https://doi.org/10.1038/s41587-019-0072-8.

    Article  CAS  PubMed  Google Scholar 

  11. Medaka [Internet]. Oxford Nanopore Technologies; 2022 [cited 2022 May 11]. https://github.com/nanoporetech/medaka

  12. Palmer J, Stajich J. Funannotate [Internet]. 2019 [cited 2022 Feb 7]. https://github.com/nextgenusfs/funannotate

  13. Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, et al. Life with 6000 genes. Science. 1996;274(546):563–7. https://doi.org/10.1126/science.274.5287.546.

    Article  Google Scholar 

  14. Keller O, Kollmar M, Stanke M, Waack S. A novel hybrid gene prediction method employing protein multiple sequence alignments. Bioinformatics. 2011;27:757–63. https://doi.org/10.1093/bioinformatics/btr010.

    Article  CAS  PubMed  Google Scholar 

  15. Korf I. Gene finding in novel genomes. BMC Bioinf. 2004;5:59. https://doi.org/10.1186/1471-2105-5-59.

    Article  Google Scholar 

  16. Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics. 2007;23:673–9. https://doi.org/10.1093/bioinformatics/btm009

  17. Blin K, Shaw S, Kloosterman AM, Charlop-Powers Z, van Wezel GP, Medema MH, et al. antiSMASH 6.0: improving cluster detection and comparison capabilities. Nucleic Acids Res. 2021;49:W29–35. https://doi.org/10.1093/nar/gkab335

  18. Manni M, Berkeley MR, Seppey M, Simão FA, Zdobnov EM. BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes. Mol Biol Evol. 2021;38:4647–54. https://doi.org/10.1093/molbev/msab199

  19. Mac Aogáin M, Chaturvedi V, Chotirmall SH. MycopathologiaGENOMES: the new “home” for the publication of fungal genomes. Mycopathologia. 2019;184:551–4. https://doi.org/10.1007/s11046-019-00366-3

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Funding

The authors declare that no funds, grants, or other support were received during the preparation of this manuscript.

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Authors and Affiliations

  1. INSERM U1070, Poitiers, France

    Luc Deroche, Julien Buyck, Blandine Rammaert, Sandrine Marchand & Kévin Brunet

  2. Faculté de Médecine et Pharmacie, Université de Poitiers, Poitiers, France

    Luc Deroche, Julien Buyck, Estelle Cateau, Blandine Rammaert, Sandrine Marchand & Kévin Brunet

  3. Département des Agents Infectieux, Service de Virologie, CHU de Poitiers, Poitiers, France

    Luc Deroche

  4. Département des Agents Infectieux, Service de Mycologie-Parasitologie, CHU de Poitiers, Poitiers, France

    Estelle Cateau & Kévin Brunet

  5. Service de Toxicologie et de Pharmacocinétique, CHU de Poitiers, Poitiers, France

    Sandrine Marchand

  6. Service de Maladies Infectieuses et Tropicales, CHU de Poitiers, Poitiers, France

    Blandine Rammaert

  7. Laboratoire Écologie et Biologie des Interactions, UMR CNRS 7267, Université de Poitiers, Poitiers, France

    Estelle Cateau

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  1. Luc Deroche
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  2. Julien Buyck
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  3. Estelle Cateau
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  4. Blandine Rammaert
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  6. Kévin Brunet
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Correspondence to Kévin Brunet.

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Deroche, L., Buyck, J., Cateau, E. et al. Draft Genome Sequence of Kazachstania bovina Yeast Isolated from Human Infection. Mycopathologia 187, 413–415 (2022). https://doi.org/10.1007/s11046-022-00639-4

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  • DOI: https://doi.org/10.1007/s11046-022-00639-4

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