Abstract
This short commentary takes a stroll through the early days of the field of combinatorial chemistry and molecular diversity. It offers a high-level perspective on the field’s beginnings—and its future—as it relates to journals, books, pioneers, and advances.
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Abbreviations
- ADME:
-
Absorption, distribution, metabolism, and excretion or elimination
- DOS:
-
Diversity-oriented synthesis
- %F:
-
Bioavailability
- GPCR:
-
G-protein-coupled receptor
- HTS:
-
High-throughput screening
- MCR:
-
Multicomponent reaction
- MW:
-
Molecular weight
- NCE:
-
New chemical entity
- PK:
-
Pharmacokinetics
- NROT:
-
Number of rotatable bonds
- SAR:
-
Structure–activity relationship
- SBDD:
-
Structure-based drug design
- SPOC:
-
Solid-phase organic chemistry
- SPOS:
-
Solid-phase organic synthesis
References
Geysen HM, Houghten RA, Kauffman S, Lebl M, Moos WH, Pavia MR, Szostak JW (1995) Molecular diversity comes of age. Mol Divers 1: 1–3. doi:10.1007/BF01715803
Moos WH, Pavia MR, Kay B, Ellington A (eds) (1997) Annual reports in combinatorial chemistry and molecular diversity, vol 1. ESCOM, Leiden, The Netherlands
Pavia MR, Moos WH (eds) (1999) Annual reports in combinatorial chemistry and molecular diversity, vol 2. Kluwer, Dordrecht
Zuckermann RN, Kerr JM, Kent SBH, Moos WH (1992) Efficient method for the preparation of peptoids [oligo(N-substituted glycines)] by submonomer solid-phase synthesis. J Am Chem Soc 114: 10646–10648. doi:10.1021/ja00052a076
Zuckermann RN, Martin EJ, Spellmeyer DC, Stauber GB, Shoemaker KR, Kerr JM, Figliozzi GM, Goff DA, Siani MA, Simon RJ, Banville SC, Brown EG, Wang L, Richter LS, Moos WH (1994) Discovery of nanomolar ligands for 7-transmembrane G-protein coupled receptors from a diverse N-(substituted)glycine peptoid library. J Med Chem 37: 2678–2685. doi:10.1021/jm00043a007
Martin EJ, Blaney JM, Siani MA, Spellmeyer DC, Wong AK, Moos WH (1995) Measuring diversity: Experimental design of combinatorial libraries for drug discovery. J Med Chem 38: 1431–1436. doi:10.1021/jm00009a003
Bunin BA, Ellman JA (1992) A general and expedient method for the solid-phase synthesis of 1,4-benzodiazepine derivatives. J Am Chem Soc 114:10997-10998. See also Bunin BA, Plunkett MJ, Ellman JA (1994) The combinatorial synthesis and chemical and biological evaluation of a 1,4-benzodiazepine library. Proc Natl Acad Sci USA 91:4708–4712. doi:10.1073/pnas.91.11.4708
Furka A (1995) History of combinatorial chemistry. Drug Dev Res 36: 1–12. doi:10.1002/ddr.430360102
Geysen HM, Meloen RH, Barteling SJ (1984) Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acid. Proc Natl Acad Sci USA 81: 3998–4002. doi:10.1073/pnas.81.13.3998
Houghten RA (1985) General method for the rapid solid-phase synthesis of large numbers of peptides: specificity of antigen-antibody interaction at the level of individual amino acids. Proc Natl Acad Sci USA 82: 5131–5135. doi:10.1073/pnas.82.15.5131
Lebl M (1999) Parallel personal comments on classical papers in combinatorial chemistry. J Comb Chem 1: 3–24. doi:10.1021/cc9800327
DeWitt SH, Kiely JS, Stankovic CJ, Schroeder MC, Cody DMR, Pavia MR (1993) Diversomers: an approach to nonpeptide, nonoligomeric chemical diversity. Proc Natl Acad Sci USA 90: 6909–6913. doi:10.1073/pnas.90.15.6909
Rutter WJ, Santi DV (1991) General method for producing and selecting peptides with specific properties. US Patent 5,010,175, 23 April 1991
Fodor SP, Read JL, Pirrung MC, Stryer L, Lu AT, Solas D (1991) Light-directed, spatially addressable parallel chemical synthesis. Science 251: 767–773. doi:10.1126/science.1990438
Lam KS, Salmon SE, Hersh EM, Hruby VJ, Kamierski WM, Knapp RJ (1991) A new type of synthetic peptide library for identifying ligand-binding activity. Nature 354: 82–84. doi:10.1038/354082a0
Scott JK, Smith GP (1990) Search for peptide ligands with an epitope library. Science 249: 386–390. doi:10.1126/science.1696028
Simon RJ, Kania RS, Zuckermann RN, Huebner VD, Jewell DA, Banville S, Ng S, Wang L, Rosenberg S, Marlowe CK, Spellmeyer DC, Tan R, Frankel AD, Santi DV, Cohen FE, Bartlett PA (1992) Peptoids: a modular approach to drug discovery. Proc Natl Acad Sci USA 89: 9367–9371. doi:10.1073/pnas.89.20.9367
Balakin KV, Tkachenko SE, Lang SA, Okun I, Ivaschenko AA, Savchuk NP (2002) Property based design of GPCR-targeted library. J Chem Inf Comput Sci 42: 1332–1342. doi:10.1021/ci025538y
Lowrie JF, Delisle RK, Hobbs DW, Diller DJ (2004) The different strategies for designing GPCR and kinase targeted libraries. Comb Chem High Throughput Screen 7: 495–510
Müller G (2003) Medicinal chemistry of target family-directed masterkeys. Drug Discov Today 8: 681–691. doi:10.1016/S1359-6446(03)02781-8
Ghose AK, Vishwanadham VN, Wendoloski JJ (1999) A knowledge-based approach in designing combinatorial or medicinal chemistry libraries for drug discovery. 1. A qualitative and quantitative characterization of known drug databases. J Comb Chem 1: 55–68. doi:10.1021/cc9800071
Persidis A (2000) Combinatorial chemistry. Nat Biotechnol 18:IT50–IT52 (Industry trends supplement). doi:10.1038/80095
Lipinski CA, Lombardo F, Dominy BW, Feeny PJ (1997) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 23: 3–25. doi:10.1016/S0169-409X(96)00423-1
Veber DF, Johnson SR, Cheng HY, Smith BR, Ward KW, Kopple KD (2002) Molecular properties that influence the oral bioavailability of drug candidates. J Med Chem 24: 2615–2623. doi:10.1021/jm020017n
Brenk R, Schipani A, James D, Gilbert IH, Frearson J, Wyatt PG (2008) Lessons learnt from assembling screening libraries for drug discovery of neglected diseases. Chem Med Chem 3:435–444. Copyright Wiley-VCH Verlag GmgH & Co, KGaA. doi:10.1002/cmdc.200700139
Sorous DG, Zhang J, Zhang L, Wang Z, Tepper MA (2006) Kinase inhibitor recognition by use of a multivariable QSAR model. J Mol Graph Model 24: 278–295. doi:10.1016/j.jmgm.2005.09.004
Habashita H, Kokubo M, Hamano S-I, Hamanaka N, Toda M, Shibayama S, Tada H, Sagawa K, Fukushima D, Maeda K, Mitsuya H (2006) Design, synthesis, and biological evaluation of the combinatorial library with a new spirodiketopiperazine scaffold. Discovery of novel potent and selective low-molecular-weight CCR 5(antagonists. J Med Chem 49): 4140–4152. doi:10.1021/jm060051s
Nishizawa R, Nishiyama T, Hisaichi K, Matsunaga N, Minamoto C, Habashita H, Takaoka Y, Toda M, Shibayama S, Tada H, Sagawa K, Fukushima D, Maeda K, Mitsuya H (2007) Spirodiketopiperazine-based CCR5 antagonists: Lead optimization from biologically active metabolite. Bioorg Med Chem Lett 17: 727–731. doi:10.1016/j.bmcl.2006.10.084
Liddle J, Allen MJ, Borthwick AD, Brooks DP, Davies DE, Edwards RM, Exall AM, Hamlett C, Irving WR, Mason AM, McCafferty GP, Nerozzi F, Peace S, Philp J, Pollard D, Pullen MA, Shabbir SS, Sollis SL, Westfall TD, Woollard PM, Wu C, Hickey DM (2008) The discovery of GSK221149A: A potent and selective oxytocin antagonist. Bioorg Med Chem Lett 18: 90–94. doi:10.1016/j.bmcl.2007.11.008
Hulme C, Gore V (2003) Multi-component reactions: emerging chemistry in drug discovery from xylocain to crixivan. Curr Med Chem 10: 51–80. doi:10.2174/0929867033368600
Gedye R, Smith F, Westaway K, Ali H, Baldisera L, Laberge L, Rousell J (1986) The use of microwave ovens for rapid organic synthesis. Tetrahedron Lett 27: 279–282. doi:10.1016/S0040-4039(00)83996-9
Studer A, Hadida S, Ferritto R, Kim S-Y, Jeger P, Wipf P, Curran DP (1997) Fluorous synthesis: A fluorous-phase strategy for improving separation efficiency in organic synthesis. Science 275: 823–826. doi:10.1126/science.275.5301.823
Kolb HC, Finn MG, Sharpless KB (2001) Click chemistry: Diverse chemical function from a few good reactions. Angew Chem Int Ed 40: 2004–2021. doi:10.1002/1521-3773(20010601)40:11<2004::AID-ANIE2004>3.0.CO;2-5
Schreiber SL (2000) Target-oriented and diversity-oriented organic synthesis in drug discovery. Science 287: 1964–1969. doi:10.1126/science.287.5460.1964
Salimi-Moosavi H, Tang T, Harrison DJ (1997) Electroosmotic pumping of organic solvents and reagents in microfabricated reactor chips. J Am Chem Soc 119: 8716–8717. doi:10.1021/ja971735f
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Moos, W.H., Hurt, C.R. & Morales, G.A. Combinatorial chemistry: oh what a decade or two can do. Mol Divers 13, 241–245 (2009). https://doi.org/10.1007/s11030-009-9127-y
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DOI: https://doi.org/10.1007/s11030-009-9127-y