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On the Similarity of DNA Primary Sequences Based on 5-D Representation

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Abstract

We propose a 5-D representation of DNA sequences based on the classifications of the four basic acid bases A,T,G, and C. The use of the 5-D representation is illustrated by constructing sequence invariants based on the entries in derived sequence matrices restricted to a selected width of a band along the main diagonal. As an application, we make a comparison for the first exon of β-globin gene sequences belonging to eleven different species based on the 5-D representation.

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Authors and Affiliations

  1. Laboratory of Embedded Computing and System, School of Computer and Communication, Hunan University, Changsha Hunan, 410082, China

    Bo Liao, Renfa Li & Wen Zhu

  2. Department of Computer Science, Hunan City University, Yiyang, 413000, China

    Xuyu Xiang

Authors
  1. Bo Liao
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  2. Renfa Li
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  3. Wen Zhu
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  4. Xuyu Xiang
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Correspondence to Bo Liao.

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Liao, B., Li, R., Zhu, W. et al. On the Similarity of DNA Primary Sequences Based on 5-D Representation. J Math Chem 42, 47–57 (2007). https://doi.org/10.1007/s10910-006-9091-z

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  • DOI: https://doi.org/10.1007/s10910-006-9091-z

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