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Expression analysis of a type S2 EUL-related lectin from rice in Pichia pastoris

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Abstract

Rice (Oryza sativa) expresses different putative carbohydrate-binding proteins belonging to the class of lectins containing an Euonymus lectin (EUL)-related domain, one of them being OrysaEULS2. The OrysaEULS2 sequence consists of a 56 amino acid N-terminal domain followed by the EUL sequence. In this paper the original sequence of the EUL domain of OrysaEULS2 and some mutant forms have been expressed in Pichia pastoris. Subsequently, the recombinant proteins were purified and their carbohydrate binding properties determined. Analysis of the original protein on the glycan array revealed interaction with mannose containing structures and to a lesser extent with glycans containing lactosamine related structures. It was shown that mutation of tryptophan residue 134 into leucine resulted in an almost complete loss of carbohydrate binding activity of OrysaEULS2. Our results show that the EUL domain in OrysaEULS2 interacts with glycan structures, and hence can be considered as a lectin. However, the binding of the protein with the array is much weaker than that of other EUL-related lectins. Furthermore, our results indicate that gene divergence within the family of EUL-related lectins lead to changes in carbohydrate binding specificity.

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References

  1. Peumans, W.J., Van Damme, E.J.M.: Lectins as plant defense proteins. Plant Physiol. 109, 347–352 (1995)

    Article  PubMed  CAS  Google Scholar 

  2. Van Damme, E.J.M., Lannoo, N., Fouquaert, E., Peumans, W.J.: The identification of inducible cytoplasmic/nuclear carbohydrate-binding proteins urges to develop novel concepts about the role of plant lectins. Glycoconj. J. 20, 449–460 (2004)

    Article  PubMed  Google Scholar 

  3. Van Damme, E.J.M., Lannoo, N., Peumans, W.J.: Plant lectins. Adv. Bot. Res. 48, 107–209 (2008)

    Google Scholar 

  4. Fouquaert, E., Peumans, W.J., Smith, D.F., Proost, P., Savvides, S., Van Damme, E.J.M.: The old Euonymus europaeus agglutinin represents a novel family of ubiquitous plant proteins. Plant Physiol. 147, 1316–1324 (2008)

    Article  PubMed  CAS  Google Scholar 

  5. Fouquaert, E., Peumans, W.J., Vandekerckhove, T.T.M., Ongenaert, M., Van Damme, E.J.M.: Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta. BMC Plant Biol. 9, 136 (2009)

    Article  PubMed  Google Scholar 

  6. Moons, A., Gielen, J., Vandekerckhove, J., Van Der Straeten, D., Gheysen, G., Van Montagu, M.: An abscisic-acid and salt-stress-responsive rice cDNA from a novel plant gene family. Planta 202, 443–454 (1997)

    Article  PubMed  CAS  Google Scholar 

  7. Cereghino, J.L., Cregg, J.M.: Heterologous protein, expression in the methylotrophic yeast Pichia pastoris. FEMS Microbiol. Rev. 24, 45–66 (2000)

    Article  PubMed  CAS  Google Scholar 

  8. Macauley-Patrick, S., Fazenda, M.L., McNeil, B., Harvey, L.M.: Heterologous protein production using the Pichia pastoris expression system. Yeast 22, 249–270 (2005)

    Article  PubMed  CAS  Google Scholar 

  9. Daly, R., Hearn, M.T.W.: Expression of heterologous proteins in Pichia pastoris: a useful experimental tool in protein engineering and production. J. Mol. Recognit. 18, 119–138 (2005)

    Article  PubMed  CAS  Google Scholar 

  10. Elias, S.B., Brust, P.F., Koutz, P.J., Waters, A.F., Harpold, M.M., Gingeras, T.R.: Isolation of alcohol oxidase and two other methanol regulatable genes from the yeast Pichia pastoris. Mol. Cell. Biol. 5, 1111–1121 (1985)

    Google Scholar 

  11. Hartner, F.S., Glieder, A.: Regulation of methanol utilisation pathway genes in yeasts. Microb. Cell Fact. 5, 39 (2006)

    Article  PubMed  Google Scholar 

  12. Lannoo, N., Vervecken, W., Proost, P., Rougé, P., Van Damme, E.J.M.: Expression of the nucleocytoplasmic tobacco lectin in the yeast Pichia pastoris. Protein Expr. Purif. 53, 275–282 (2007)

    Article  PubMed  CAS  Google Scholar 

  13. Fouquaert, E., Smith, D.F., Peumans, W.J., Proost, P., Balzarini, J., Savvides, S.N., Van Damme, E.J.M.: Related lectins from snowdrop and maize differ in their carbohydrate- binding specificity. Biochem. Biophys. Res. Commun. 380, 260–265 (2009)

    Article  PubMed  CAS  Google Scholar 

  14. Al Atalah, B., Fouquaert, E., Vanderschaeghe, D., Proost, P., Balzarini, J., Smith, D.F., Rougé, P., Lasanajak, Y., Callewaert, N., Van Damme, E.J.M.: Expression analysis of the nucleocytoplasmic lectin “Orysata” from rice in Pichia pastoris. FEBS J. 278, 2064–2079 (2011)

    Article  PubMed  CAS  Google Scholar 

  15. Van Hove, J., Fouquaert, E., Smith, D.F., Proost, P., Van Damme, E.J.M.: Lectin activity of the nucleocytoplasmic EUL protein from Arabidopsis thaliana. Biochem. Biophys. Res. Commun. 414, 101–105 (2011)

    Article  PubMed  Google Scholar 

  16. Treiber, N., Reinert, D.J., Carpusca, I., Aktories, K., Schulz, G.E.: Structure and mode of action of a mosquitocidal holotoxin. J. Mol. Biol. 381, 150–159 (2008)

    Article  PubMed  CAS  Google Scholar 

  17. Krieger, E., Koraimann, G., Vriend, G.: Increasing the precision of comparative models with YASARA NOVA - a self-parameterizing force field. Proteins 47, 393–402 (2002)

    Article  PubMed  CAS  Google Scholar 

  18. Gaboriaud, C., Bissery, V., Benchetrit, T., Mornon, J.P.: Hydrophobic cluster analysis: an efficient new way to compare and analyse amino acid sequences. FEBS Lett. 224, 149–155 (1987)

    Article  PubMed  CAS  Google Scholar 

  19. Laskowski, R.A., MacArthur, M.W., Moss, D.S., Thornton, J.M.: PROCHECK: a program to check the stereochemistry of protein structures. J. Appl. Cryst. 26, 283–291 (1993)

    Article  CAS  Google Scholar 

  20. Nicholls, A., Sharp, K.A., Honig, B.: Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins Struc. Func. Genet. 11, 281–296 (1991)

    Article  CAS  Google Scholar 

  21. Gilson, M.K., Honig, B.H.: Calculation of electrostatic potential in an enzyme active site. Nature 330, 84–86 (1987)

    Article  PubMed  CAS  Google Scholar 

  22. Blixt, O., Head, S., Mondala, T., Scanlan, C., Huflejt, M.E., Alvarez, R., Bryan, M.C., Fazio, F., Calarese, D., Stevens, J., Skehel, J., van Die, I., Burton, R., Wilson, A., Cummings, R., Bovin, N., Wong, C.-H., Paulson, C.: Printed covalent glycan array for ligand profiling of diverse glycan binding proteins. Proc. Natl. Acad. Sci. U.S.A. 101, 17033–17038 (2004)

    Article  PubMed  CAS  Google Scholar 

  23. Bradford, M.M.: A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248–254 (1976)

    Article  PubMed  CAS  Google Scholar 

  24. Laemmli, U.K.: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680–685 (1970)

    Article  PubMed  CAS  Google Scholar 

  25. Van Damme, E.J.M., Hao, Q., Chen, Y., Barre, A., Vandenbussche, F., Desmyter, S., Rougé, P., Peumans, W.J.: Ribosome-inactivating proteins: a family of plant proteins that do more than inactivate ribosomes. Crit. Rev. Plant Sci. 20, 395–465 (2001)

    Google Scholar 

  26. Arndt, J.W., Gu, J., Jaroszewski, L., Schwarzenbacher, R., Hanson, M.A., Lebeda, F.J., Stevens, R.C.: The structure of the neurotoxin-associated protein HA33/A from Clostridium botulinum suggests a reoccurring β-trefoil fold in the progenitor toxin complex. J. Mol. Biol. 346, 1083–1093 (2005)

    Article  PubMed  CAS  Google Scholar 

  27. Van Damme, E.J.M., Rougé, P., Peumans, W.J.: Carbohydrate-protein interactions: plant lectins. In: Kamerling, J.P., Boons, G.J., Lee, Y.C., Suzuki, A., Taniguchi, N., Voragen, A.G.J. (eds.) Comprehensive glycoscience - from chemistry to systems biology, pp. 563–599. Elsevier, New York (2007)

    Google Scholar 

  28. Smith, D.F., Song, X., Cummings, R.D.: Use of glycan microarrays to explore specificity of glycan-binding proteins. In: Fukuda, M. (ed.) Meth. Enzymol, vol. 480, pp. 417–444. Academic, Burlington (2010)

    Google Scholar 

  29. Van Damme, E.J.M., Barre, A., Rougé, P., Peumans, W.J.: Cytoplasmic/ nuclear plant lectins: a new story. Trends Plant Sci. 9, 484–489 (2004)

    Article  PubMed  Google Scholar 

  30. Oliveira, C., Felix, W., Moreira, R.A., Teixeira, J.A., Domingues, L.: Expression of frutalin, an α-D-galactose-binding jacalin-related lectin, in the yeast Pichia pastoris. Protein Expr. Purif. 60, 188–193 (2008)

    Article  PubMed  CAS  Google Scholar 

  31. Sreekrishna, K., Brankamp, R.G., Kropp, K.E., Blankenship, D.T., Tsay, J.T., Smith, P.L., Wierschke, J.D., Subramaniam, A., Birkenberger, L.A.: Strategies for the optimal synthesis and secretion of heterologous proteins in the methylotrophic yeast Pichia pastoris. Gene 190, 55–62 (1997)

    Article  PubMed  CAS  Google Scholar 

  32. Rutenber, E., Katzin, B.J., Ernst, S., Collins, E.J., Mlsna, D., Ready, M.P., Robertus, J.D.: Crystallographic refinement of ricin to 2.5-Å. Proteins 10, 240–250 (1991)

    Article  PubMed  CAS  Google Scholar 

  33. Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.: Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module. J. Mol. Biol. 316, 65–78 (2002)

    Article  PubMed  CAS  Google Scholar 

  34. Arndt, J.W., Gu, J., Jaroszewski, L., Schwarzenbacher, R., Hanson, M.A., Lebeda, F.J., Stevens, R.C.: The structure of the neurotoxin-associated protein HA33/A from Clostridium botulinum suggests a reoccurring β-trefoil fold in the progenitor toxin complex. J. Mol. Biol. 346, 1083–1093 (2005)

    Article  PubMed  CAS  Google Scholar 

  35. Schouppe, D., Rougé, P., Lasanajak, Y., Barre, A., Smith, D.F., Proost, P., Van Damme, E.J.M.: Mutational analysis of the carbohydrate binding activity of the tobacco lectin. Glycoconj. J. 27, 613–623 (2010)

    Article  PubMed  CAS  Google Scholar 

  36. Loris, R., Hamelryck, T., Bouckaert, J., Wyns, L.: Legume lectin structure. Biochim. Biophys. Acta 1383, 9–36 (1998)

    Article  PubMed  CAS  Google Scholar 

  37. Rougé, P., Peumans, W.J., Barre, A., Van Damme, E.J.M.: A structural basis for the difference in specificity between the two jacalin-related lectins from mulberry (Morus nigra) bark. Biochem. Biophys. Res. Commun. 304, 91–97 (2003)

    Article  PubMed  Google Scholar 

  38. Hao, Q., Van Damme, E.J.M., Hause, B., Barre, A., Chen, Y., Rougé, P., Peumans, W.J.: Iris bulbs express type 1 and type 2 ribosome inactivating proteins with unusual properties. Plant Physiol. 125, 866–876 (2001)

    Article  PubMed  CAS  Google Scholar 

  39. Notenboom, V., Boraston, A.B., Williams, S.J., Kilburn, D.G., Rose, D.R.: High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding. Biochemistry 41, 4246–4254 (2002)

    Article  PubMed  CAS  Google Scholar 

  40. Stanley, P., Cummings, R.D.: Structures common to different glycans. In: Varki, A., Cummings, R.D., Esko, J.D., Freeze, H.H., Stanley, P., Bertozzi, C.R., Hart, G.W., Etzler, M.E. (eds.) Essentials of glycobiology, 2nd edition, Chapter 13, pp. 175–198. Cold Spring Harbor Laboratory Press, Cold Spring Harbor (2009)

    Google Scholar 

  41. Preston, A., Mandrell, R.E., Gibson, B.W., Apicella, M.A.: The lipooligosaccharides of pathogenic gram-negative bacteria. Crit. Rev. Microbiol. 22, 139–180 (1996)

    Article  PubMed  CAS  Google Scholar 

  42. Wang, G., Ge, Z., Rasko, D.A., Taylor, D.E.: Lewis antigens in Helicobacter pylori: biosynthesis and phase variation. Mol. Microbiol. 36, 1187–1196 (2000)

    Article  PubMed  CAS  Google Scholar 

  43. Monzavi-Karbassi, B., Luo, P., Cunto-Amesty, G., Jousheghany, F., Pashov, A., Weissman, D., Kieber-Emmons, T.: Fucosylated lactosamines participate in adhesion of HIV-1 envelope glycoprotein to dendritic cells. Arch. Virol. 149, 75–91 (2004)

    Article  PubMed  CAS  Google Scholar 

  44. Leonard, R.: The presence of Lewis A epitopes in Arabidopsis thaliana glycoconjugates depends on an active α4-fucosyltransferase gene. Glycobiology 12, 299–306 (2002)

    Article  PubMed  CAS  Google Scholar 

  45. Melo, N.: Identification of the human Lewis A carbohydrate motif in a secretory peroxidase from a plant cell suspension culture (Vaccinium myrtillus L.). FEBS Lett. 415, 186–191 (1997)

    Article  PubMed  CAS  Google Scholar 

  46. Dam, T.K.: Fine specificities of two lectins from Cymbosema roseum seeds: a lectin specific for high-mannose oligosaccharides and a lectin specific for blood group H type II trisaccharide. Glycobiology 21, 925–933 (2011)

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

This work was funded primarily by the Fund for Scientific Research – Flanders (FWO grants G.0022.08 and KAN 1.5.069.09.N.), the Research Council of Ghent University (projects BOF2005 ⁄ GOA ⁄ 008 and BOF2007 ⁄ GOA ⁄ 0017). Bassam Al Atalah is recipient of a doctoral grant from the Special Research Council of Ghent University. The authors want to thank the Consortium for Functional Glycomics funded by the NIGMS GM62116 for the glycan array analysis. The authors also want to thank the Rice Genome Resource Center, National Institute of Agrobiological Sciences, Japan for providing the cDNA clone encoding OrysaEULS2.

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Correspondence to Els J. M. Van Damme.

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Al Atalah, B., Rougé, P., Smith, D.F. et al. Expression analysis of a type S2 EUL-related lectin from rice in Pichia pastoris . Glycoconj J 29, 467–479 (2012). https://doi.org/10.1007/s10719-012-9405-2

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