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The genomic proliferation of transposable elements in colonizing populations: Schistosoma mansoni in the new world

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Abstract

Transposable elements (TEs) are mobile genes with an inherent ability to move within and among genomes. Theory predicts that TEs proliferate extensively during physiological stress due to the breakdown of TE repression systems. We tested this hypothesis in Schistosoma mansoni, a widespread trematode parasite that causes the human disease schistosomiasis. According to phylogenetic analysis, S. mansoni invaded the new world during the last 500 years. We hypothesized that new world strains of S. mansoni would have more copies of TEs than old world strains due to the physiological stress associated with invasion of the new world. We quantified the copy number of six TEs (Saci-1, Saci-2 and Saci-3, Perere-1, Merlin-sm1, and SmTRC1) in the genome and the transcriptome of old world and new world strains of S. mansoni, using qPCR relative quantification. As predicted, the genomes of new world parasites contain significantly more copies of class I and class II TEs in both laboratory and field strains. However, such differences are not observed in the transcriptome suggesting that either TE silencing mechanisms have reactivated to control the expression of these elements or the presence of inactive truncated copies of TEs.

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Acknowledgments

We sincerely acknowledge Dr. Phil LoVerde and Dr. Eric Loker for sharing the LE, EGY and Kenyan field isolates with us. We also thank Dr. Fred Lewis, Dr. Matt Tucker and the staff of the Biomedical Research Institute for providing the following reagents through BEI Resources, NIAID, NIH: (1) Schistosoma mansoni, Strain NMRI, Exposed Biomphalaria glabrata strain NMRI, NR-21962 and (2) Schistosoma mansoni, Strain PR-1, Exposed Biomphalaria glabrata strain M-line, NR-21961. We greatly appreciate the members of the Minchella and DeWoody labs for their comments on an earlier version of the manuscript. This project was funded by the Purdue University Department of Biological Sciences (DJM), Sigma Xi grants-in-aid program (BKW), and the University Faculty Scholar program (JAD).

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Correspondence to Bhagya K. Wijayawardena.

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Wijayawardena, B.K., DeWoody, J.A. & Minchella, D.J. The genomic proliferation of transposable elements in colonizing populations: Schistosoma mansoni in the new world. Genetica 143, 287–298 (2015). https://doi.org/10.1007/s10709-015-9825-6

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