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Fish welfare and genomics

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References

  • Aguilar R, Gil L, Fernandez-Teruel A, Tobeña A (2004) Genetically-based behavioral traits influence the effects of shuttle box avoidance overtraining and extinction upon intertrial responding: a study with the Roman rat strains. Behav Process 66:63–72

    Article  Google Scholar 

  • Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson Jr J, Lu L, Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Levy R, Wilson W, Grever MR, Byrd JC, Botstein D, Brown PO, Staudt LM (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403(6769):503–511

    Article  PubMed  CAS  Google Scholar 

  • Aluru N, Vijayan MM (2007) Heaptic transcriptome response to glucocorticoid receptor activation in rainbow trout. Physiol Genom 31:489–491

    Article  CAS  Google Scholar 

  • Arlinghaus R, Cooke SJ, Schwab A, Cowx IG (2007) Fish welfare: a challenge to the feelings-based approach, with implications for recreational fishing. J Fish Biol 8:57–71

    Google Scholar 

  • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat Genet 25(1):25–29

    Article  PubMed  CAS  Google Scholar 

  • Ashley PJ (2007) Fish welfare: current issues in aquaculture. Appl Anim Behav Sci 104:199–235

    Article  Google Scholar 

  • Aubin-Horth N, Desjardins JK, Martei YM, Balshine S, Hofmann HA (2007) Masculinized dominant females in a cooperatively breeding species. Mol Ecol 16:1349–1358

    Article  PubMed  Google Scholar 

  • Babin PJ, Thisse C, Durliat M, Andre M, Akimenko MA, Thisse B (1997) Both apolipoprotein E and A-I genes are present in a nonmammalian vertebrate and are highly expressed during embryonic development. Proc Natl Acad Sci USA 94(16):8622–8627

    Article  PubMed  CAS  Google Scholar 

  • Baron D, Raharijaona M, Houlgatte R (2007) DNA microarrays. IRBM 28(5–6):210–215

    Article  Google Scholar 

  • Baron D, Bihouee A, Teusan R, Dubois E, Savagner F, Steenman M et al (2011) MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets. Bioinformatics 27:725–726

    Article  PubMed  CAS  Google Scholar 

  • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281–297

    Article  PubMed  CAS  Google Scholar 

  • Bartolomucci A, Palanza P, Sacerdote P, Panerai AE, Sgoifo A, Dantzer R, Parmigiani S (2005) Social factors and individual vulnerability to chronic stress exposure. Neurosci Biobehav Rev 29:67–81

    Google Scholar 

  • Becker CH, Bern M (2010) Recent developments in quantitative proteomics. Mutat Res (in press)

  • Berton O, McClung CA, DiLeone RJ, Krishnan V, Renthal W, Russo SJ, Graham D, Tsankova NM, Bolanos CA, Rios M, Monteggia LM, Self DW, Nestler EJ (2006) Essential role of BDNF in the mesolimbic dopamine pathway in social defeat stress. Science 311:864–868

    Article  PubMed  CAS  Google Scholar 

  • Blais A, Tsikitis M, costa-Alvear D, Sharan R, Kluger Y, Dynlacht BD (2005) An initial blueprint for myogenic differentiation. Genes Dev 19:553–569

    Article  PubMed  CAS  Google Scholar 

  • Blow N (2008) Metabolomics: biochemistry’s new look. Nature 455:697–700

    Article  PubMed  CAS  Google Scholar 

  • Bosworth CA, Chou C, Cole RB, Rees BB (2005) Protein expression patterns in zebrafish skeletal muscle: initial characterization and the effects of hypoxic exposure. Proteomics 5:1362–1371

    Article  PubMed  CAS  Google Scholar 

  • Braithwaite VA, Huntingford FA (2004) Fish and welfare: do fish have the capacity for pain perception and suffering? Anim Welf 13:S87–S92

    CAS  Google Scholar 

  • Brambell C (1965) Report of the technical committee to enquire into the welfare of animals kept under intensive livestock husbandry systems. Command Report 2836, Her Majesty’s Stationery Office, London

  • Broglio C, Rodriguez F, Gomez A, Arias JL, Salas C (2010) Selective involvement of the goldfish lateral pallium in spatial memory. Behav Brain Res 210:191–201

    Article  PubMed  CAS  Google Scholar 

  • Broom D (1986) Indicators of poor welfare. Brit Vet J 142:524–526

    Article  CAS  Google Scholar 

  • Broom D, Johnson K (1993) Stress and animal welfare. Chapman and Hall, London

    Google Scholar 

  • Buckley BA, Gracey AY, Somero GN (2006) The cellular response to heat stress in the goby Gillichthys mirabilis: a cDNA microarray and protein-level analysis. J Exp Biol 209:2660–2677

    Article  PubMed  CAS  Google Scholar 

  • Caipang CMA, Brinchmann MF, Berg I, Iversen M, Eliassen R, Kiron V (2008) Changes in selected stress and immune-related genes in Atlantic cod, Gadus morhua, following overcrowding. Aquacult Res 39:1533–1540

    Article  CAS  Google Scholar 

  • Cairns MT, Johnson MC, Talbot AT, Pemmasani JK, McNeill RE, Houeix B, Sangrador-Vegas A, Pottinger TG (2008) A cDNA microarray assessment of gene expression in the liver of rainbow trout (Oncorhynchus mykiss) in response to a handling and confinement stressor. Comp Biochem Physiol Part D 3(1):51–66

    CAS  Google Scholar 

  • Calduch-Giner JA, Davey G, Saera-Vila A, Houeix B, Talbot A, Prunet P, Cairns MT, Pérez-Sánchez J (2010) Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.). BMC Genomics 11:193

    Article  PubMed  CAS  Google Scholar 

  • Carboni L, Piubelli C, Pozzato C, Astner H, Arban R, Righetti PG, Hamdan M, Domenici E (2006) Proteomic analysis of rat hippocampus after repeated psychosocial stress. Neuroscience 137:1237–1246

    Article  PubMed  CAS  Google Scholar 

  • Chalmel F, Rolland AD, Niederhauser-Wiederkehr C, Chung SS, Demougin P, Gattiker A, Moore J, Patard JJ, Wolgemuth DJ, Jégou B, Primig M (2007) The conserved transcriptome in human and rodent male gametogenesis. Proc Natl Acad Sci USA 104(20):8346–8351

    Article  PubMed  CAS  Google Scholar 

  • Chandroo KP, Duncan IJH, Moccia RD (2004) Can fish suffer?: perspectives on sentience, pain, fear and stress. Appl Anim Behav Sci 86:225–250

    Article  Google Scholar 

  • Chou MY, Hsiao CD, Chen SC, Chen IW, Liu ST, Hwang PP (2008) Effects of hypothermia on gene expression in zebrafish gills: upregulation in differentiation and function of ionocytes as compensatory responses. J Exp Biol 211(19):3077–3084

    Article  PubMed  CAS  Google Scholar 

  • Cossins A, Fraser J, Hughes J, Gracey A (2006) Post-genomic approaches to understanding the mechanisms of environmentally induced phenotypic plasticity. J Exp Biol 209:2328–2336

    Article  PubMed  CAS  Google Scholar 

  • Dawkins MS (2006) A user’s guide to animal welfare science. Trends Ecol Evol 21:77–82

    Article  PubMed  Google Scholar 

  • Diekmann H, Anichtchik O, Fleming A, Futter M, Goldsmith P, Roach A, Rubinsztein DC (2009) Decreased BDNF levels are a major contributor to the embryonic phenotype of Huntingtin knockdown zebrafish. J Neurosci 29(5):1343–1349

    Article  PubMed  CAS  Google Scholar 

  • Duncan IJH (2006) The changing concept of animal sentience. Appl Anim Behav Sci 100:11–19

    Article  Google Scholar 

  • Dunn WB, Broadhurst DI, Atherton HJ, Goodacre R, Griffin JL (2011) Systems level studies of mammalian metabolomes: the roles of mass spectrometry and nuclear magnetic resonance spectroscopy. Chem Soc Rev 40:387–426

    Article  PubMed  CAS  Google Scholar 

  • Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95(25):14863–14868

    Article  PubMed  CAS  Google Scholar 

  • Engel BT (1985) Stress is a noun! No, a verb! No, an adjective. In: Field TM, McCabe PM, Schneiderman N (eds) Stress and coping. Erlbaum, Hillsdale, NJ, pp 3–12

    Google Scholar 

  • Evans DH, Piermarini M, Choe KP (2005) The multifunctional fish gill: dominant site of gas exchange, osmoregulation, acid-base regulation and excretion of nitrogenous waste. Physiol Rev 85:97–177

    Article  PubMed  CAS  Google Scholar 

  • Fast MD, Hosoya S, Johnson SC, Afonso LOB (2008) Cortisol response and immune-related effects of Atlantic salmon (Salmo salar Linnaeus) subjected to short- and long-term stress. Fish Shellfish Immunol 24:194–204

    Google Scholar 

  • Fiol DF, Kültz D (2005) Rapid hyperosmotic coinduction of two tilapia (Oreochromis mossambicus) transcription factors in gill cells. Proc Natl Acad Sci USA 102:927–932

    Article  PubMed  CAS  Google Scholar 

  • Fiol DF, Chan S, Kültz D (2006) Identification and pathway analysis of immediate hyperosmotic stress responsive molecular mechanisms in tilapia (Oreochromis mossambicus) gill. Comp Biochem Physiol Part D 1:344–356

    Google Scholar 

  • Fraser D (2009) Animal behaviour, animal welfare and the scientific study of affect. Appl Anim Behav Sci 118:108–117

    Article  Google Scholar 

  • Fraser J, Vieira de Mello L, Ward D, Rees HH, Williams DR, Fang Y, Brass A, Gracey AY, Cossins AR (2006) Hypoxia-inducible myoglobin expression in nonmuscle tissues. Proc Natl Acad Sci 103:2977–2981

    Article  PubMed  CAS  Google Scholar 

  • Frijda N (1986) The emotions. Cambridge University Press, Cambridge

    Google Scholar 

  • FSBI (2002) Fish welfare. Briefing paper 2 fisheries society of the British Isles, Granta Information Systems, Cambridge

  • Gornati R, Papis E, Rimoldi S, Terova G, Saroglia M, Bernardini G (2004) Rearing density influences the expression of stress-related genes in sea bass (Dicentrarchus labrax, L). Gene 341:111–118

    Article  PubMed  CAS  Google Scholar 

  • Gornati R, Cavaliere R, Terova G, Saroglia M, Benardini G (2005a) Molecular biology and fish welfare: a winning combination. Aquacult Int 13:51–55

    Article  CAS  Google Scholar 

  • Gornati R, Papis E, Rimoldi S, Chini V, Terova G, Prati M, Saroglia M, Bernardini G (2005b) Molecular markers for animal biotechnology: sea bass (Dicentrarchus labrax, L) HMG-CoA reductase mRNA. Gene 344:299–305

    Article  PubMed  CAS  Google Scholar 

  • Gracey AY (2007) Interpreting physiological responses to environmental change through gene expression profiling. J Exp Biol 209:1584–1592

    Article  CAS  Google Scholar 

  • Gracey AY, Troll JV, Somero GN (2001) Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis. Proc Natl Acad Sci 98:1993–1998

    Article  PubMed  CAS  Google Scholar 

  • Gracey AY, Fraser EJ, Li W, Fang Y, Taylor RR, Rogers J, Brass A, Cossins AR (2004) Coping with cold: an integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate. Proc Natl Acad Sci USA 101:16970–16975

    Article  PubMed  CAS  Google Scholar 

  • Gygi SP, Rochon Y, Franza BR, Aebersold R (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19:1720–1730

    PubMed  CAS  Google Scholar 

  • Hashimoto M, Heinrich G (1997) Brain-derived neurotrophic factor gene expression in the developing zebrafish. Int J Dev Neurosci 15(8):983–997

    Article  PubMed  CAS  Google Scholar 

  • Haugarvoll E, Bjerkås I, Nowak BF, Hordvik I, Koppang EO (2008) Identification and characterization of a novel intraepithelial lymphoid tissue in the gills of Atlantic salmon. J Anat 213(2):202–209

    Article  PubMed  Google Scholar 

  • Heinrich G (2003) A novel BDNF gene promoter directs expression to skeletal muscle. BMC Neurosci 4:1

    Article  Google Scholar 

  • Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, Bennett HA, Coffey E, Dai H, He YD, Kidd MJ, King AM, Meyer MR, Slade D, Lum PY, Stepaniants SB, Shoemaker DD, Gachotte D, Chakraburtty K, Simon J, Bard M, Friend SH (2000) Functional discovery via a compendium of expression profiles. Cell 102:109–126

    Article  PubMed  CAS  Google Scholar 

  • Huntingford FA (2008) Animal welfare in aquaculture. In: Culver K, Castle D (eds) Aquaculture innovation and social transformation. Springer, Netherlands, pp 21–33

    Chapter  Google Scholar 

  • Huntingford FA, Adams C (2005) Behavioural syndromes in farmed fish: implications for production welfare. Behaviour 142:1207–1221

    Article  Google Scholar 

  • Huntingford FA, Kadri S (2009) Taking account of fish welfare: lessons from aquaculture. J Fish Biol 75:2862–2867

    Article  PubMed  CAS  Google Scholar 

  • Huntingford FA, Adams C, Braithwaite VA, Kadri S, Pottinger TG, Sandøe P, Turnbull JF (2006) Current issues in fish welfare. J Fish Biol 68:332–372

    Article  Google Scholar 

  • Jansen RC, Nap JP (2001) Genetical genomics: the added value from segregation. Trends Genet 17(7):388–391

    Article  PubMed  CAS  Google Scholar 

  • Jobling M, Koskela J, Winberg S (1999) Feeding and growth of whitefish fed restricted and abundant rations: influences on growth heterogeneity and brain serotonergic activity. J Fish Biol 54:437–449

    Article  CAS  Google Scholar 

  • Johansen IB, Sanvik GK, Nilsson GE, Bakken M, Overli O (2011) Cortisol receptor expression differs in the brains of rainbow trout selected for divergent cortisol responses. Comp Biochem Physiol part D 6:126–132

    Google Scholar 

  • Jørgensen A, Nielsen JE, Morthorst JE, Bjerregaard P, Leffers H (2009) Laser capture microdissection of gonads from juvenile zebrafish. Reprod Biol Endocrinol 14(7):97

    Article  CAS  Google Scholar 

  • Kalujnaia S, McWilliam IS, Zaguinaiko VA, Feilen AL, Nicholson J, Hazon N, Cutler CP, Cramb G (2007) Transcriptomic approach to the study of osmoregulation in the European eel Anguilla anguilla. Physiol Genomics 31:385–401

    Article  PubMed  CAS  Google Scholar 

  • Kiley-Worthington M (1989) Ecological, environmental and ethically sound environments for animals: toward symbiosis. J Agr Ethics 2:323–347

    Article  Google Scholar 

  • Kim HG, Kim KL (2007) Decreased hippocampal cholinergic neuro stimulating peptide precursor protein associated with stress exposure in rat brain by proteomic analysis. J Neurosci Res 85:2898–2908

    Article  PubMed  CAS  Google Scholar 

  • Koolhaas JM (2008) Coping style and immunity in animals: making sense of individual variation. Brain Behav Immun 22:662–667

    Article  PubMed  CAS  Google Scholar 

  • Koolhaas JM, Korte SM, De Boer SF, Van Der Vegt BJ, Van Reenen CG, Hopster H, De Jong IC, Ruis MAW, Blokhuis HJ (1999) Coping styles in animals: current status in behavior and stress-physiology. Neuroscie Biobehav Rev 23:925–935

    Article  CAS  Google Scholar 

  • Korte SM, Koolhaas JM, Wingfield JC, McEwen BS (2005) The Darwinian concept of stress: benefits of allostasis and costs of allostatic load and the trade-offs in health and disease. Neurosci Biobehav Rev 29:3–38

    Article  PubMed  Google Scholar 

  • Korte SM, Olivier B, Koolhaas JM (2007) A new animal welfare concept based on allostasis. Physiol Behav 92:422–428

    Article  PubMed  CAS  Google Scholar 

  • Krasnov A, Koskinen H, Pehkonen P, Rexroad III CE, Afanasyev S, Mölsä H (2005) Gene expression in the brain and kidney of rainbow trout in response to handling stress. BMC Genomics 6(3):1–11

    Google Scholar 

  • Kültz D (2005) Molecular and evolutionary basis of the cellular stress response. Annu Rev Physiol 67:225–257

    Article  PubMed  CAS  Google Scholar 

  • Kültz D, Fiol D, Valkova N, Gomez-Jimenez S, Chan SY, Lee J (2007) Functional genomics and proteomics of the cellular osmotic stress response in ‘non-model’ organisms. J Exp Biol 210:1593–1601

    Article  PubMed  CAS  Google Scholar 

  • Lanahan A, Worley P (1998) Immediate-early genes and synaptic function. Neurobiol Learn Mem 70:37–43

    Article  PubMed  CAS  Google Scholar 

  • Lazarus R, Launier R (1978) Stress-related transactions between person and environment. In: Pervin LA, Lewis M (eds) Perspectives in interactional psychology. Plenum, New York, pp 287–327

    Chapter  Google Scholar 

  • Leguen I, Odjo N, Le Bras Y, Luthringer B, Baron D, Monod G, Prunet P (2010) Effect of seawater transfer on CYP1A gene expression in rainbow trout gills. Comp Biochem Physiol A Mol Integr Physiol 156(2):211–217

    Article  PubMed  CAS  Google Scholar 

  • Levine S, Ursin H (1991) What is stress? In: Brown MR, Koob GF, Rivier C (eds) Stress: neurobiology and neuroendocrinology. Dekker, New York, pp 3–21

    Google Scholar 

  • López-Schier H, Hudspeth AJ (2006) A two-step mechanism underlies the planar polarization of regenerating sensory hair cells. Proc Natl Acad Sci USA 103(49):18615–18620

    Article  PubMed  CAS  Google Scholar 

  • MacKenzie S, Ribas L, Pilarczyk M, Capdevila DM, Kadri S, Huntingford FA (2009) Screening for coping style increases the power of gene expression studies. PLOS One 4:e5314

    Article  PubMed  CAS  Google Scholar 

  • Martinowich K, Manji H, Lu B (2007) New insights into BDNF function in depression and anxiety. Nat Neurosci 10:1089–1093

    Article  PubMed  CAS  Google Scholar 

  • McEwen BS, Stellar E (1993) Stress and the individual: mechanisms leading to disease. Arch Intern Med 153:2093–2101

    Article  PubMed  CAS  Google Scholar 

  • McEwen BS, Wingfield JC (2003) The concept of allostasis in biology and biomedicine. Horm Behav 43:2–15

    Article  PubMed  Google Scholar 

  • McEwen BS, Wingfield JC (2010) What is in a name? Integrating homeostasis, allostasis and stress. Horm Behav 57:105–111

    Article  PubMed  Google Scholar 

  • Moberg G (2000) Biological responses to stress: implications for animal welfare. In: Moberg G, Mench J (eds) The biology of snimal stress: Basic principles and implications for animal welfare. CABI Publishing, Wallingford, pp 1–22

    Chapter  Google Scholar 

  • Mommoda TS, Schwindt AR, Feist GW, Gerwick L, Bayne CJ, Schreck CB (2007) Gene expression in the liver of rainbow trout Oncorhynchus mykiss, during the stress response. Comp Biochem Physiol Part D 2:303–315

    Google Scholar 

  • Moreau Y, Aerts S, De Moor B, De Strooper B, Dabrowski M (2003) Comparison and meta-analysis of microarray data: from the bench to the computer desk. Trends Genet 19(10):570–577

    Article  PubMed  CAS  Google Scholar 

  • Moreira PSA, Pulman KGT, Pottinger TG (2004) Extinction of a conditioned response in rainbow trout selected for high or low responsiveness to stress. Horm Behav 46:450–457

    Article  PubMed  CAS  Google Scholar 

  • Mu J, Xie P, Yang Z-S, Yang D-L, Lv F-J, Luo T-Y, Li Y (2007) Neurogenesis and major depression: implications from proteomic analyses of hippocampal proteins in a rat depression model. Neurosci Lett 416:252–256

    Article  PubMed  CAS  Google Scholar 

  • Northcutt RG (2006) Connections of the lateral and medial divisions of the goldfish telencephalic pallium. J Comp Neurol 494:903–943

    Article  PubMed  Google Scholar 

  • Oehlers LP, Perez AN, Walter RB (2007) Detection of hypoxia-related proteins in medaka (Oryzias latipes) brain tissue by difference gel electrophoresis and de novo sequencing of 4-sulfophenyl isothiocyanate-derivatized peptides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Comp Biochem Physiol C 145:120–133

    Google Scholar 

  • Øverli Ø, Winberg S, Pottinger TG (2005) Behavioral and neuroendocrine correlates of selection fro stress responsiveness in rainbow trout–a review. Integr Comp Biol 45:463–474

    Article  PubMed  Google Scholar 

  • Øverli Ø, Sørensen C, Pulman KGT, Pottinger TG, Korzan WJ, Summers CH, Nilsson GE (2007) Evolutionary background for stress-coping styles: Relationships between physiological, behavioral, and cognitive traits in non-mammalian vertebrates. Neurosci Biobehav Rev 31:396–412

    Article  PubMed  CAS  Google Scholar 

  • Owen SF, Giltrow E, Huggett DB, Hutchison TH, Saye J, Winter MJ, Sumpter JP (2007) Comparative physiology, pharmacology and toxicology of β-blockers: mammals versus fish. Aquat toxicol 82:145–162

    Article  PubMed  CAS  Google Scholar 

  • Podrabsky JE, Somero GN (2004) Changes in gene expression associated with acclimatation to constant temperatures and fluctuating daily temperatures in ana annual killifish Austrofundulus limnaeus. J Exp Biol 207:2237–2254

    Article  PubMed  CAS  Google Scholar 

  • Prunet P, Cairns MT, Winberg S, Pottinger TG (2008) Functional genomics of stress responses in fish. Rev Fish Sci 16:157–166

    Article  CAS  Google Scholar 

  • Ramaswamy S, Ross KN, Lander ES, Golub TR (2003) A molecular signature of metastasis in primary solid tumors. Nat Genet 33(1):49–54

    Article  PubMed  CAS  Google Scholar 

  • Reilly SC, Cossins AR, Quinn JP, Sneddon LU (2004) Discovering genes: the use of microarrays and laser capture microdissection in pain research. Brain Res Rev 46:225–233

    Article  PubMed  CAS  Google Scholar 

  • Reilly SC, Quinn JP, Cossins AR, Sneddon LU (2008) Novel candidate genes identified in the brain during nociception in common carp (Cyprinus carpio) and rainbow trout (Oncorhynchus mykiss). Neurosci Lett 437:1350–2138

    Article  CAS  Google Scholar 

  • Reilly SC, Kipar A, Hughes DJ, Quinn JP, Cossins AR, Sneddon LU (2009) Investigation of Van Gogh-like 2 mRNA regulation and localisation in response to nociception in the brain of adult common carp (Cyprinus carpio). Neurosci Lett 465(3):290–294

    Article  PubMed  CAS  Google Scholar 

  • Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I et al (2000) Genome-wide location and function of DNA binding proteins. Science 290:2306–2309

    Article  PubMed  CAS  Google Scholar 

  • Renn SC, Aubin-Horth N, Hofmann HA (2004) Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray. BMC Genomics 5:42

    Article  PubMed  CAS  Google Scholar 

  • Rimoldi S, Terova G, Brambilla F, Bernardini G, Gornati R, Saroglia M (2009) Molecular characterization and expression analysis of Na+/H+ exchanger (NHE)-1 and c-Fos genes in sea bass (Dicentrarchus labrax, L) exposed to acute and chronic hypercapnia. J Exp Mar Biol 375:32–40

    Article  CAS  Google Scholar 

  • Rollin B (1993) Animal welfare, science and value. J Agr Environ Ethic 6(Suppl 2):44–50

    Google Scholar 

  • Romero LM, Dickens MJ, Cyr NE (2009) The reactive scope model—a new model integrating homeostasis, allostasis, and stress. Horm Behav 55:375–389

    Article  PubMed  Google Scholar 

  • Rose JD (2002) The neurobehavioral nature of fishes and the question of awareness and pain. Rev Fish Sci 10:1–38

    Article  Google Scholar 

  • Rose JD (2007) Anthropomorphism and ‘mental welfare’ of fishes. Dis Aquat Org 75:139–154

    Article  PubMed  Google Scholar 

  • Ruiz-Gomez MD, Kittilsen S, Höglund E, Huntingford FA, Sørensen C, Pottinger TG, Bakken M, Winberg S, Korzan WJ, Øverli Ø (2008) Behavioral plasticity in rainbow trout (Oncorhynchus mykiss) with divergent coping styles: When doves become hawks. Horm Behav 54:534–538

    Article  CAS  Google Scholar 

  • Ruiz-Gomez MD, Huntingford FA, Øverli Ø, Thörnqvist PO (2011) Response to environmental change in rainbow trout selected for divergents coping styles. Physiol Behav 102(3–4):317–322

    Article  CAS  Google Scholar 

  • Sandøe P, Simonsen H (1992) Assessing animal welfare: where does science end and philosophy begin? Anim Welf 1:257–267

    Google Scholar 

  • Santos GA, Schrama JW, Mamauag REP, Rombout JHWM, Verreth JAJ (2010) Chronic stress impairs performance, energy metabolism and welfare indicators in European seabass (Dicentrarchus labrax): The combined effects of fish crowding and water quality deterioration. Aquaculture 299:73–80

    Article  Google Scholar 

  • Sarropoulou E, Kotoulas G, Power DM, Geisler R (2005) Gene expression profining of gilhead sea bream during early development and detection of stress-related genes by the application of cDNA microarray technology. Physiol Genomics 23:182–191

    Article  PubMed  CAS  Google Scholar 

  • Sathiyaa R, Vijayan MM (2003) Autoregulation of glucocorticoid receptor by cortisol in rainbow trout hepatocytes. Am J Physiol Cell Physiol 284:C1508–C1515

    PubMed  CAS  Google Scholar 

  • Segal E, Friedman N, Kaminski N, Regev A, Koller D (2005) From signatures to models: understanding cancer using microarrays. Nat Genet 37(Suppl):S38–S45

    Article  PubMed  CAS  Google Scholar 

  • Selye H (1950) Stress. Acta, Montreal

    Google Scholar 

  • Shaffer AL, Rosenwald A, Hurt EM, Giltnane JM, Lam LT, Pickeral OK et al (2001) Signatures of the immune response. Immunity 15:375–385

    Article  PubMed  CAS  Google Scholar 

  • Shen R, Ghosh D, Chinnayan AM (2004) Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data. BMC Genomics 5(1):94

    Article  PubMed  CAS  Google Scholar 

  • Singer MA (2003) Do mammals, birds, reptiles and fish have similar nitrogen conserving systems? Comp Biochem Physiol B 134:543–558

    Article  PubMed  CAS  Google Scholar 

  • Sittaramane V, Sawant A, Wolman MA, Maves L, Halloran MC, Chandrasekhar A (2009) The cell adhesion molecule Tag1, transmembrane protein Stbm/Vangl2, and Lamininalpha1 exhibit genetic interactions during migration of facial branchiomotor neurons in zebrafish. Dev Biol 325(2):363–373

    Article  PubMed  CAS  Google Scholar 

  • Skynner HA, Amos DP, Murray F, Salim K, Knowles MR, Munoz-Sanjuan I, Camargo LM, Bonnert TP, Guest PC (2006) Proteomic analysis identifies alterations in cellular morphology and cell death pathways in mouse brain after chronic corticosterone treatment. Brain Res 1102:12–26

    Article  PubMed  CAS  Google Scholar 

  • Smith RW, Wood CM, Cash P, Diao L, Pärt P (2005) Apolipoprotein AI could be a significant determinant of epithelial integrity in rainbow trout gill cell cultures: A study in functional proteomics. Biochim Biophys Acta Proteins Proteomics 1749:81–93

    Article  CAS  Google Scholar 

  • Sneddon LU, Margareto J, Cossins AR (2005) The use of transcriptomics to address questions in behaviour: production of a suppression subtractive hybridisation library form dominance hierarchies of rainbow trout. Physiol Biochem Zool 78(5):695–705

    Article  PubMed  CAS  Google Scholar 

  • Sneddon LU, Schmidt R, Fang Y, Cossins AR (2011) Molecular correlates of social dominance: a novel role for ependymin in aggression. PLoS One 6(4):e18181

    Article  PubMed  CAS  Google Scholar 

  • Sørensen C, Nilsson GE, Summers CH, Øverli Ø (2011) Social stress reduces forebrain cell proliferation in rainbow trout (Oncorhynchus mykiss). Behav Brain Res (in press)

  • St-Cyr S, Aubin-Horth N (2009) Integrative and genomics approaches to uncover the mechanistic bases of fish behavior and its diversity. Comp Biochem Physiol A Mol Integr Physiol 152(1):9–21

    Article  PubMed  CAS  Google Scholar 

  • Sterling P, Eyer J (1988) Allostasis: a new paradigm to explain arousal pathology. In: Fisher S, Reason J (eds) Handbook of life stress, cognition and health. Wiley, New York, pp 629–649

    Google Scholar 

  • Susman EJ, Schmeelk KH, Worrall BK, Granger DA, Ponirakis A, Chrousos GP (1999) Corticotropin-releasing hormone and cortisol: longitudinal associations with depression and antisocial behavior in pregnant adolescents. J Am Acad Child Adolesc Psych 38:460–467

    Google Scholar 

  • Takei Y, Kawakoshi A, Tsukada T, Yuge S, Ogoshi M, Inoue K, Hyodo S, Bannai H, Miyano S (2006) Contribution of comparative fish studies to general endocrinology: structure and function of some osmoregulatory hormones. J Exp Zool 305A:787–798

    Article  CAS  Google Scholar 

  • Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM (1999) Systematic determination of genetic network architecture. Nat Genet 22:281–285

    Article  PubMed  CAS  Google Scholar 

  • Terova G, Gornati R, Rimoldi S, Bernardini G, Saroglia M (2005) Quantification of a glucocorticoid receptor in sea bass (Dicentrarchus labrax, L.) reared at high stocking density. Gene 357:144–151

    Article  PubMed  CAS  Google Scholar 

  • Terova G, Rimoldi S, Cora S, Bernardini G, Gornati R, Saroglia M (2008) Acute and chronic hypoxia affects HIF-1 alpha mRNA levels in sea bass (Dicentrarchus labrax). Aquaculture 279:150–159

    Article  CAS  Google Scholar 

  • Tognoli C, Rossi F, Di Cola F, Baj G, Tongiorgi E, Terova G, Saroglia M, Bernardini G, Gornati R (2010) Acute stress alters transcript expression pattern and reduces processing of proBDNF to mature BDNF in Dicentrarchus labrax. BMC Neurosci 11:4

    Article  PubMed  CAS  Google Scholar 

  • Tomie A, Aguado AS, Pohorecky LA, Benjamin D (2000) Individual differences in Pavlovian autoshaping of lever pressing in rats predict stress-induced corticosterone release and mesolimbic levels of monoamines. Pharmacol Biochem Behav 65:509–517

    Article  PubMed  CAS  Google Scholar 

  • Vargas JP, Lopez JC, Portavella M (2009) What are the functions of fish brain pallium? Brain Res Bull 79:436–440

    Article  PubMed  Google Scholar 

  • Vazzana M, Vizzini A, Sanfratello MA, Celi M, Salerno G, Parrinello M (2010) Differential expression of two glucocorticoid receptors in seabass (teleost fish) head kidney after exogeneous cortisol inoculation. Comp Biochem Physiol Part A 157:49–54

    Article  CAS  Google Scholar 

  • Villarroel F, Bastías A, Casado A, Amthauer R, Concha MI (2007) Apolipoprotein A-I, an antimicrobial protein in Oncorhynchus mykiss: Evaluation of its expression in primary defence barriers and plasma levels in sick and healthy fish. Fish Shellfish Immunol 23:197–209

    Article  PubMed  CAS  Google Scholar 

  • Von Holst D (1998) The concept of stress and its relevance for animal behavior. Adv Stud Behav 27:1–131

    Article  Google Scholar 

  • von Krogh K, Sørensen C, Nilsson GE, Øverli Ø (2010) Forebrain cell proliferation, behavior, and physiology of zebrafish, Danio rerio, kept in enriched or barren environments. Physiol Behav 101:32–39

    Article  CAS  Google Scholar 

  • Weckwerth W (2010) Metabolomics: an integral technique in systems biology. Bioanalysis 2:829–836

    Article  PubMed  CAS  Google Scholar 

  • Winberg S, Nilsson GE, Olsén KH (1992) The effect of stress and starvation on brain serotonin utilization in Arctic charr (Salvelinus alpinus). J Exp Biol 165:229–239

    CAS  Google Scholar 

  • Wingfield JC (2003) Control of behavioural strategies for capricious environments. Anim Behav 66:807–815

    Article  Google Scholar 

  • Wiseman S, Osachoff H, Bassett E, Malhotra J, Bruno J, VanAggelen G, Mommsen TP, Vijayan MM (2007) Gene expression pattern in the liver during recovery from an acute stressor in rainbow trout. Comp Biochem Physiol D 2:234–244

    Google Scholar 

  • Zhang Z, Ju Z, Wells MC, Walter RB (2009) Genomic approaches in the identification of hypoxia biomarkers in model fish species. J Exp Mar Biol Ecol 381:S180–S187

    Article  PubMed  CAS  Google Scholar 

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Authors and Affiliations

  1. UR1037 SCRIBE, IFR140, INRA, Campus de Beaulieu, 35042, Rennes Cedex, France

    P. Prunet

  2. Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, 1432, Ås, Norway

    Ø. Øverli

  3. Research Unit in Environmental and Evolutionary Biology (URBE), The University of Namur (FUNDP), Rue de Bruxelles 61, 5000, Namur, Belgium

    J. Douxfils & P. Kestemont

  4. Department of Biotechnology and Molecular Science, University of Insubria, Varese, Italy

    G. Bernardini

  5. INSERM U533, Institut du Thorax, Faculté de Médecine, Université de Nantes, Nantes, France

    D. Baron

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  1. P. Prunet
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  2. Ø. Øverli
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  3. J. Douxfils
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  4. G. Bernardini
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  5. P. Kestemont
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  6. D. Baron
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Correspondence to P. Prunet.

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Prunet, P., Øverli, Ø., Douxfils, J. et al. Fish welfare and genomics. Fish Physiol Biochem 38, 43–60 (2012). https://doi.org/10.1007/s10695-011-9522-z

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