Skip to main content

Advertisement

Log in

Fish genetics and conservation research in India: status and perspectives

  • Published:
Fish Physiology and Biochemistry Aims and scope Submit manuscript

Abstract

Recent years have witnessed a rise in sensitivity towards protection of natural genetic resources and the environment at the international level. This is evident from the implementation of the convention on biodiversity (CBD). To conserve and optimize utilization of its bioresources, India enacted the Biological Diversity Act 2002. The conservation and management of aquatic resources is important for sustainable utilization of fisheries potential for the economic advancement of farmers and fishery workers, today as well as for posterity. As the biotechnological and genomic revolutions are ready to take off, the sovereign rights of native inhabitants to intellectual property rights (IPR) related to aquatic genetic resources and associated traditional knowledge are also integral components of management strategies for genetic resources.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Ayyappan S, Jena JK, Gopalakrishanan A, Pandey AK (2006) Handbook of fisheries and aquaculture. Indian Council of Agricultural Research, New Delhi, p 754

    Google Scholar 

  • Barman HK, Barat A, Yadav BM, Banerjee S, Meher PK, Reddy PVGK, Jana RK (2003) Genetic variation between four species of Indian major carps as revealed by random amplified polymorphic DNA assay. Aquaculture 217:115–123

    Article  CAS  Google Scholar 

  • Bartley D, Bagley M, Gall G, Bently B (1992) Use of linkage disequilibrium data to estimate effective size of hatchery and natural fish populations. Conserv Biol 6:365–375

    Article  Google Scholar 

  • Berejikian BA, Tezak EP, Schroder SL, Knudsen CM, Hard JJ (1997) Reproductive behavioral interactions between wild and captively reared coho salmon (Oncorhynchus kisutch). ICES J Marine Sci 54:1040–1050

    Google Scholar 

  • Bourke EA, Coughlan J, Jansson H, Galvin P, Cross TF, Bourke E (1997) Allozyme variation in populations of Atlantic salmon located throughout Europe: diversity that could be compromised by introductions of reared fish. ICES J Marine Sci 54:976–985

    Google Scholar 

  • CAMP (1998) Conservation assessment and management plan for freshwater fishes of India. Zoo Out reach Organization and NBFGR, Lucknow. 156 pp

    Google Scholar 

  • Carvajal-Carmona LG, Soto ID, Pineda N, Ortiz-Barrientos D, Duque C, Ospina-Duque J, McCarthy M, Montoya P, Alvarez VM, Bedoya G, Ruiz-Linares A, (2000) Strong Amerind/white sex bias and a possible Sephardic contribution among the founders of a population in northwest Colombia. Am J Human Genet 67:1287–1295

    CAS  Google Scholar 

  • Carvalho GR, Hauser L (1994) Molecular genetics and the stock concept in fisheries. In: Carvalho GR, Pitcher TJ (eds) Reviews in fish biology and fisheries. Chapman and Hall, London pp 326–350

    Google Scholar 

  • Cornuet JM, Luikart G (1997) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001–2014

    Google Scholar 

  • Cornuet JM, Piry S, Luikart G, Estoup A, Sloignac M (1999) New methods employing multilocus genotypes to selector exclude populations as origins of individuals. Genetics 153:1989–2000

    PubMed  CAS  Google Scholar 

  • Das P, Barat A, Meher PK, Ray PP, Majumdar D (2005a) Isolation and characterization of polymorphic microsatellites in Labeo rohita and their cross-species amplification in related species. Mol Ecol Notes 5:231–233

    Article  CAS  Google Scholar 

  • Das P, Prasad H, Meher PK, Barat A, Jana RK (2005b) Evaluation of genetic relationship among six Labeo species using randomly amplified polymorphic DNA (RAPD). Aquacult Res 36:564–569

    Article  CAS  Google Scholar 

  • DeWoody JA, Avise JC (2000) Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J Fish Biol 56:461–473

    Article  CAS  Google Scholar 

  • Ehrlich JJ David SD, Nadeau JH (1997) Synteny conservation and chromosome rearrangements during mammalian evolution. Genetics 147:289–296

    Google Scholar 

  • Ellegren H (1999) Inbreeding and relatedness in Scandinavian grey wolves, Canis lupus. Hereditas 103:239–244

    Article  Google Scholar 

  • Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge

    Google Scholar 

  • Garrigan D, Marsh PC, Dowling TE (2002) Long-term effective population size of three endangered Colorado River fishes. Anim Conserv 5:95–102

    Article  Google Scholar 

  • Gopalakrishnan A, Musammilu KK, Abdul Munir PM, Lal KK Kapoor D, Ponniah AG, Mohindra V (2004) Microsatellite DNA markers to assess population structure of red tailed barb, Gonoproktopterus curmuca. Acta Zool Sinica 50:686–690

    CAS  Google Scholar 

  • Gorda S, Varadi L (2001) Gene banking and common carp breeding program in Hungary, pp 119–122. In: Gupta MV, Acosta BO (eds) Fish genetics research in member countries and institutions of the international network on genetics in aquaculture, ICLARM Conf. Proc. 64, 179 pp. World Fish Centre Publication, Penang, Malaysia ISBN 983-2346-05-3

  • Hartl DL, Clark AG (1997) Genetic and phenotypic variation. In: Principles of population genetics, 3rd edn. Sinauer Associates, Inc, Sunderlan, Massachutetts, pp 37–68

  • Hauser L, Adcock G, Smith PJ, Bernal Ramirirez JH, Carvalho GR (2002) Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus). Proc National Acad Sci 99:11742–11747

    Article  PubMed  CAS  Google Scholar 

  • Hong Y, Chen S, Scartl M (2000) Embryonic stem cells: current status and perspectives. Fish Physiol Biochem 22:165–170

    Article  CAS  Google Scholar 

  • IUCN (2006) World Commission on Protected Areas (http://www.iucn.org/themes/wcpa/)

  • Kirankumar S, Pandian TJ (2004) Interspecific androgenetic restoration of rosy barb using cadaveric sperm. Genome 47:66–73

    Article  PubMed  CAS  Google Scholar 

  • Koskinen MT, Ranta E, Piironen J, Veselov A, Nilsson J, Primmer CR (2002) Microsatellite data detect low levels of intrapopulation genetic diversity and resolve phylogeographic patterns in European grayling, Thymallus thymallus, Salmonidae. Heredity 88:391–401

    Article  PubMed  CAS  Google Scholar 

  • Kumar S, Bright Singh IS, Philip R (2001) Development of a cell culture system from the ovarian tissue of African catfish (Clarias gariepinus) Aquaculture 194:51–62

    Article  CAS  Google Scholar 

  • Kushwaha B, Srivastava SK, Nagpure NS, Ogale SN, Ponniah AG (2001) Cytogenetic studies in two species of mahseer, Tor khudree and Tor mussullah, Cyprinidae, Pisces from India. Chromosome Sci 5:47–50

    Google Scholar 

  • Kushwaha B, Nagpure NS, Srivastava SK, Kumar R, Verma MS (2002). Variation of micronuclei in peripheral blood cells of Channa punctatus. Ind J Animal Sci 73:1192–1199

    Google Scholar 

  • Lakra WS, Behera MR, Sivakumar N, Goswami M, Bhonde RR (2005) Development of cell culture from liver and kidney of Indian major carp, Labeo rohita (Hamilton). Indian J Fish 52:373–376

    Google Scholar 

  • Lakra WS, Lal KK, Mohindra V (2006a) Genetic characterization and upgradation of fish species for enhanced aquaculture production and biodiversity conservation. Fish Chimes 26:256–258

    Google Scholar 

  • Lakra WS, Sivakumar N, Goswami M, Bhonde RR (2006b) Development of two cell culture systems from Asian Sea bass Lates calcarifer (Bloch). Aquacult Res 37:18–24

    Article  Google Scholar 

  • Lakra WS, Bhonde RR, Sivakumar N, Ayyappan S (2006c) A new fibroblast like cell line from the fry of golden mahseer Tor putitora (Ham.). Aquaculture 253:238–243

    Article  Google Scholar 

  • Lal KK, Chauhan T, Mandal A, Singh RK, Khulbe L, Ponniah AG, Mohindra V (2004a) Identification of microsatellite DNA markers for population structure analysis in Indian major carp, Cirrhinus mrigala (Hamilton-Buchanan, 1882). J Appl Ichthyology 20:87–91

    Article  CAS  Google Scholar 

  • Lal KK, Dhirendra Kumar, Srivastava SK, Mukherjee A, Mohindra V, Prakash S, Sinha M, Ponniah AG (2004b). Genetic variation in Tenualosa ilisha (Hamilton-Buchnan) population in river Ganges. Indian J Fish 51:33–42

  • Latta RG, Mitton JB (1997) A comparison of population differentiation across four classes of gene markers in limber pine (Pinus flexilis James). Genetics 146:1153–1163

    PubMed  CAS  Google Scholar 

  • Luikart G, Cornuet JM (1998) Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv Biol 12:228–237

    Article  Google Scholar 

  • Lynch M, Ritland K (1999) Estimation of pairwise relatedness with molecular markers. Genetics 152:1753–1766

    PubMed  CAS  Google Scholar 

  • Liu ZJ, Cordes JF (2004) DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238:1–37

    Article  CAS  Google Scholar 

  • Majumdar KC, Ravinder K, Nasaruddin K (1997) DNA fingerprinting in three Indian major carps and Tilapia using BKM (3) and M13 multilocus probes. Aquacult Res 28:129–138

    Article  Google Scholar 

  • Menezes M, Arolkar RU, Rathore V (2002) Genetic relationships among five nemipterid fish species from the Indian coast using allozyme analysis. J Fish Biol 60:1326–1330

    Article  CAS  Google Scholar 

  • Mohindra V, Ranjana, Khulbe L, Ponniah AG, Lal KK (2004) Microsatellite loci to assess genetic variation in Tor putitora . J Appl Ichthyol 20:466–469

  • Mohindra V, Narain L, Punia P, Gopalakrishnan A, Mandal A, Kapoor D, Ponniah AG, Lal KK (2005) Microsatellite DNA markers for population-genetic studies of Labeo dyocheilus (McClelland, 1839). J Appl Ichthyol 21:481–482

    Article  Google Scholar 

  • Mohindra V, Singh RK, Palanichamy M, Ponniah AG, Lal, KK (2007) Genetic Identification of three species of genus Clarias using allozyme and mitochondrial DNA markers. J Appl Ichthyol 1:104–109

    Google Scholar 

  • Moritz C (1999) Conservation units and translocation: strategies for conserving evolutionary processes. Hereditas 130:217–228

    Article  Google Scholar 

  • Nagpure NS, Kushwaha B, Srivastava SK, Ponniah AG (2000) Comparative Karyomorphology of African catfish Clarias gariepinus (Burchell) and Asian catfish Clarias batrachus (Linn.). Chromosome Sci 4:57–59

    Google Scholar 

  • Nagpure NS, Kushwaha B, Srivastava SK, Ponniah AG (2001) Comparative cytogenetic studies in Indian major carps Labeo rohita, Catla catla and Cirrhinus mrigala (Cyprinidae, Pisces). Chromosome Sci 5:153–158

    Google Scholar 

  • Nagpure NS, Kushwaha B, Srivastava, Satish K, Halder A, Ponniah AG (2002) Comparative chromosome painting in fish using human sex chromosome probes. Indian J Fish 50:103–106

    Google Scholar 

  • Nagpure NS, Kushwaha B, Srivastava SK, Kumar R, Gopalakrishnan A, Basheer VS, Verma MS (2003) Characterization of endemic fish species from Western Ghats, Labeo dussumieri, Horabagrus brachysoma, and Puntius filamentosus using Cytogenetic markers. Nucleus 46:110–114

    Google Scholar 

  • NATP (2004) Germ plasm Inventory, Evaluation and Genebanking of Freshwater Fishes. Mode MM, Project code No. 27/28/98/NATP/MM-III-18, final report, project funded by World Bank, National Bureau of Fish Genetic Resources, Lucknow, U.P., India

    Google Scholar 

  • Naish KA, Skibinski DOF (1998) Tetranucleotide microsatellite loci for Indian major carp. J Fish Biol 53:886–889

    Article  CAS  Google Scholar 

  • NBFGR (2004) Annual Report. National Bureau of Fish Genetic Resources, Lucknow, India

  • Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York

    Google Scholar 

  • O’Brien SJ (1991) Molecular genome mapping: lessons and prospects. Curr Opin Genet Dev 1:105– 111

    Article  PubMed  CAS  Google Scholar 

  • Oliver CH, Shuter BJ, Minns CK (1995) Toward a definition of conservation principles for fisheries management Can J Fish Aqu Sci 52:1584–1594

    Article  Google Scholar 

  • Pandian TJ (2002) Cloning the fish, Curr Sci 83:1063–1064

    Google Scholar 

  • Ponniah AG, Sarkar UK (2000) Fish Biodiversity of North East India. National Bureau of Fish Genetic Resources, Lucknow, 228 pp. ISBN 81-901014-1-2

  • Ponniah AG, Goplalakrishanan A (2000) Endemic fish diversity of Western Ghats. National Bureau of Fish Genetic Resources, Lucknow, 228 pp. ISBN 81-901014-2-0

  • Punia P, Gupta HS, Singh RK, MohindraV, Lal KK, Ranjana, Chauhan VS, Lakra WS (2006) Polymorphic microsatellite markers isolated from partially enriched genomic library of Chitala chitala. Mol Eco Notes 6:1263–1265

  • Ryman N, Utter F, Laikre L (1995) Protection of intraspecific biodiversity of exploited fishes. Rev Fish Bio Fish 5:417–446

    Article  Google Scholar 

  • Scribner KT, Pearce JM (2000) Microsatellites: evolutionary and methodological background and empirical applications at individual, population and phylogenetic levels. In: Baker A (ed) Molecular methods in ecology. Blackwell Science Limited, London. pp 235–271

  • Secor DH, Houde, ED (1998) Use of larval stocking in restoration of Chesapeake Bay striped bass. ICES J Marine Sci 55:228–239

    Article  Google Scholar 

  • Ward RD, Woodwark M, Skibinski DOF (1994) A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. J Fish Biol 44:213–232

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to W. S. Lakra.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Lakra, W.S., Mohindra, V. & Lal, K.K. Fish genetics and conservation research in India: status and perspectives. Fish Physiol Biochem 33, 475–487 (2007). https://doi.org/10.1007/s10695-007-9168-z

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10695-007-9168-z

Keywords

Navigation