Skip to main content
Log in

Identification of soybean mosaic virus resistance alleles in Jindou 1 soybean

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

Jindou 1 is a soybean cultivar from China, which is resistant to all seven Soybean mosaic virus (SMV) strains identified in the U.S. An F2 population consisted of 91 plants derived from the cross Jindou 1× Essex were used for genetic analysis of SMV resistance. The segregation analysis of the F2 population indicated that Jindou 1 contained a dominant gene for SMV G1 resistance. Co-segregating analyses showed that the gene was tightly linked to a SNP marker, 3gG2-snp2, which was derived from the SMV Rsv1 candidate gene 3gG2, with a genetic distance 1.1 cM and the gene was independent to the single nucleotide polymorphism (SNP) marker, Barc-040713-07825, which is linked to Rsv4 on chromosome 2 (linkage group D1b). The gene in Jindou 1 was assumed to be Rsv1-y based on an Rsv1-specific PCR-based marker 3gG2-f1/r1 and the SNP maker 3gG2-snp1. Beside Rsv1-y, Jindou 1 was postulated to have Rsv3 based on the reaction pattern to 7 SMV strains G1–G7 in comparisons with the patterns in SMV differential lines.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Allard RW (1956) Formulas and tables to facilitate the calculation of recombination values in heredity. Hilgardia 24:235–279

    Google Scholar 

  • Caicedo AL, Williamson SH, Hernandez RD (2007) Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS enetics 3:1745–1756

    CAS  Google Scholar 

  • Chen P, Choi CW (2008) Characterization of genetic interaction between soybean and soybean mosaic virus. Rao GP (eds) Molecular Diagnosis of Plant Viruses Studium Press, Houston, In, pp 389–422

    Google Scholar 

  • Chen P, Buss GR, Roane CW, Tolin SA (1991) Allelism among genes for resistance to soybean mosaic virus in strain differential soybean cultivars. Crop Sci 31:305–309

    Article  Google Scholar 

  • Chen P, Buss GR, Roane CW, Tolin SA (1994) Inheritance in soybean of resistant and necrotic reactions to soybean mosaic virus strains. Crop Sci 34:414–422

    Article  Google Scholar 

  • Cho EK, Goodman RM (1979) Strains of soybean mosaic virus: classification based on virulence in resistant soybean cultivars. Phytopathology 69:467–470

    Article  Google Scholar 

  • Choi IY, Hyten DL, Matukumalli LK, Song Q, Chaky JM, Quigley CV, Chase K, Lark KG, Reiter RS, Yoon MS, Hwang EY, Yi SI, Young ND, Shoemaker RC, van Tassell CP, Specht JE, Cregan PB (2007) A soybean transcript map: gene distribution, haplotype and single nucleotide polymorphism analysis. Genetics 176:685–696

    Article  PubMed  CAS  Google Scholar 

  • Edwards ML, Cooper JL (1985) Plant virus detection using a new form of indirect ELISA. J Virol Methods 11:309–319

    Article  PubMed  CAS  Google Scholar 

  • Fjellstrom R, Conaway-Bormans CA, McClung AM, Marchetti MA, Shank AR, Park WD (2004) Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisea pathotypes. Crop Sci 44:1790–1798

    Article  CAS  Google Scholar 

  • Foolad MR, Panthee DR (2012) Marker-assisted selection in tomato breeding. Crit Rev Plant Sci 31:93–123

    Article  Google Scholar 

  • Giancola S, McKhann HI, Berard A, Camilleri C, Durand S, Libeau P, Roux F, Rebound X, Gut IG, Brunel D (2006) Utilization of three high-throughput SNP genotyping methods, the GOOD assay, Amplifluor and Taqman, in diploid and polyploidy plants. Theor Appl Genet 112:1115–1124

    Article  PubMed  CAS  Google Scholar 

  • Gore MA, Hayes AJ, Jeong SC, Yu YG, Buss GR, Saghai Maroof MA (2002) Mapping tightly linked genes controlling potyvirus infection at the Rsv1 and Rpv1 region in soybean. Genome 45:592–599

    Article  PubMed  CAS  Google Scholar 

  • Hayes AJ, Saghai Maroof MA (2000) Targeted resistance gene mapping in soybean using modified AFLPs. Theor Appl Genet 100:1279–1283

    Article  CAS  Google Scholar 

  • Hayes AJ, Ma G, Buss GR, Saghai Maroof MA (2000) Molecular marker mapping of Rsv4, a gene conferring resistance to all known strains of soybean mosaic virus. Crop Sci 40:1434–1437

    Article  CAS  Google Scholar 

  • Hayes AJ, Jeong SC, Gore MA, Yu YG, Buss GR, Tolin SA, Saghai Maroof MA (2004) Recombination within a nucleotide-bindingsite/leucine-rich-repeat gene cluster produces new variants conditioning resistance to soybean mosaic virus in soybeans. Genetics 166:493–503

    Article  PubMed  CAS  Google Scholar 

  • Hwang TY, Yu S, Yang K, Kim HM, Jeong SC (2006) Application of comparative genomics in developing molecular markers tightly linked to the virus resistance gene Rsv4 in soybean. Genome 49:380–388

    Article  PubMed  CAS  Google Scholar 

  • Hyten DL, Hartman GL, Nelson RL, Frederick RD, Concibido VC, Narvel JM, Cregan PB (2007) Map location of the Rpp 1 locus that confers resistance to soybean rust in soybean. Crop Sci 47:837–838

    Article  CAS  Google Scholar 

  • Jeong SC, Saghai Maroof MA (2004) Detection and genotyping of SNPs tightly linked to two disease resistance loci, Rsv1 and Rsv3, of soybean. Plant Breeding 123:305–310

    Article  CAS  Google Scholar 

  • Jeong SC, Kristipati S, Hayes AJ, Maughan PJ, Noffsinger SL, Gunduz I, Buss GR, Saghai Maroof MA (2002) Genetic and sequence analysis of markers tightly linked to the soybean mosaic virus resistance gene, Rsv3. Crop Sci 42:265–270

    Article  PubMed  CAS  Google Scholar 

  • Kamiya M, Kiguchi T (2003) Rapid DNA extraction method from soybean seeds. Breed Sci 53:277–279

    Article  CAS  Google Scholar 

  • Kisha T, Sneller CH, Diers BW (1997) Relationship between genetic distance among parents and genetic variance in populations of soybean. Crop Sci 37:1317–1325

    Article  Google Scholar 

  • Li Z, Bernard RL, Nelson RL (1998) A RAPD marker with a heterozygous form linked to the Rsv1 locus in soybean. p157 In Agronomy abstracts, Annual meetings USA. Baltimore, Maryland

    Google Scholar 

  • Li Z, Nelson RL, Bernard RL, Peng Y (2004) Identification and sequence analysis of a RAPD marker tightly linked to the Rsv1 locus in soybean. Soybean Newsletter 31

  • Li D, Chen P, Shi A, Shakiba E (2008) Effect of temperature on expression of SMV-induced necrosis in soybean carrying homozygous and heterozygous alleles. J. Heredity 100:348–354

    Article  Google Scholar 

  • Li D, Chen P, Alloatti J, Shi A, Chen YF (2010) Identification of new alleles for resistance to soybean mosaic virus in soybean. Crop Sci 50:649–655

    Article  Google Scholar 

  • Liu B (1998) Statistical genomics: Linkage, mapping, and QTL analysis. CRC Press, Boca Raton

    Google Scholar 

  • Moose SP, Mumm RH (2008) Molecular Plant Breeding as the Foundation for 21st Century. Crop Improvement Plant Physiology 147:969–977

    Article  CAS  Google Scholar 

  • Saghai Maroof MA, Tucker DM, Skoneczka JA, Bowman BC, Tripathy S, Tolin SA (2010) Fine mapping and candidate gene discovery of the soybean mosaic virus resistance gene, Rsv4. The Plant Genome 3:14–22

    Article  CAS  Google Scholar 

  • Shi A, Qiu W (2000) Plant resistance to fungus and bacterial diseases and molecular biology technology. In: Yang Z, Hu S, Zhou X (eds) Biotechnology & Sustainable Agriculture Shanghai Scientific and Technological. Literature Publishing House, Shanghai, pp 70–100

    Google Scholar 

  • Shi A, Chen P, Zheng C, Hou A, Zhang B (2008a) A PCR-based marker for the Rsv1 locus conferring resistance to soybean mosaic virus. Crop Sci 48:262–268

    Article  CAS  Google Scholar 

  • Shi A, Chen P, Li D, Zheng C, Hou A, Zhang B (2008b) Genetic confirmation of two independent genes for resistance to soybean mosaic virus in J05 Soybean using SSR markers. J Heredity 99(6):598–603

    Article  CAS  Google Scholar 

  • Shi A, Chen P, Vierling R, Zheng C, Li D, Dong D, Shakiba E, Cervantez I (2011) Multiplex single nucleotide polymorphism (SNP) assay for detection of soybean mosaic virus resistance genes in soybean. Ther Appl Genet 122(2):445–457

    Article  CAS  Google Scholar 

  • Song Q, Jia G, Zhu Y, Grant D, Nelson RT, Hwang EY, Hyten DL, Cregan PB (2010) Abundance of SSR motifs and development of candidate polymorphic SSR markers (BARCSOYSSR_10) in soybean. Crop Sci 50:1950–1960

    Article  CAS  Google Scholar 

  • Suh SJ, Bowman BC, Jeong N, Yang K, Kastl C, Tolin SA, Saghai Maroof MA, Jeong SC (2011) The Rsv3 locus conferring resistance to Soybean Mosaic Virus is associated with a cluster of coiled-coil nucleotide-binding leucine-rich repeat genes. Plant Genome 4:55–64

    Article  Google Scholar 

  • Weir BS (1996) Genetic data analysis II: Methods for discrete population genetic data. Sinauer Assoc, Inc., Sunderland

    Google Scholar 

  • Yu YG, Saghai Maroof MA, Buss GR, Maughan PJ, Tolin SA (1994) RFLP and microsatellite mapping of a gene for soybean mosaic virus resistance. Phytopathology 84:60–64

    Article  CAS  Google Scholar 

  • Zheng C, Chen P, Gergerich R (2005) Characterization of resistance to soybean mosaic virus in diverse soybean germplasm. Crop Sci 45:2503–2509

    Article  Google Scholar 

  • Zheng C, Chen P, Li D, Gergerich R (2008) Identification of new alleles for resistance to soybean mosaic virus in soybean. Can J Plant Path 30:595–603

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Pengyin Chen.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Shi, A., Chen, P., Vierling, R. et al. Identification of soybean mosaic virus resistance alleles in Jindou 1 soybean. Euphytica 192, 181–187 (2013). https://doi.org/10.1007/s10681-012-0816-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10681-012-0816-8

Keywords

Navigation