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Diversity of Botryosphaeriaceae species associated with conifers in Portugal

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Abstract

Botryosphaeriaceous fungi were isolated from conifers showing disease symptoms such as diebacks, blights, and cankers. The isolates were grouped based on morphology and ERIC-PCR fingerprinting patterns and representatives of each group were identified by sequencing of the internal transcribed spacer (ITS) region. Nine species from four different genera in Botryosphaeriaceae were identified within the isolates. Many new fungus-host associations were established and several species of Botryosphaeriaceae are reported from conifers for the first time. Most of these species also represent new reports from Portugal. The genus Neofusicoccum that was thought to be mainly restricted to angiosperms was the most frequent within the collection of isolates, followed by Diplodia. Dothiorella and Botryosphaeria represented a minor fraction of the isolates. Interestingly, the most common species was N. luteum, which had never been reported from coniferous hosts. Our results indicate that Neofusicoccum species may be more important as pathogens of conifers than it was previously recognised.

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References

  • Abdollahzadeh, J., Goltapeh, E. M., Javadi, A., Shams-bakhsh, M., Zare, R., & Phillips, A. J. L. (2009). Barriopsis iraniana and Phaeobotryon cupressi: two new species of the Botryosphaeriaceae from trees in Iran. Persoonia, 23, 1–8.

    Article  PubMed  CAS  Google Scholar 

  • Alves, A., Correia, A., Luque, J., & Phillips, A. J. L. (2004). Botryosphaeria corticola sp. nov. on Quercus species, with notes and description of Botryosphaeria stevensii and its anamorph Diplodia mutila. Mycologia, 96, 598–613.

    Article  PubMed  Google Scholar 

  • Alves, A., Correia, A., & Phillips, A. J. L. (2006). Multigene genealogies and morphological data support Diplodia cupressi sp. nov., previously recognized as Diplodia pinea f. sp. cupressi as a distinct species. Fungal Diversity, 23, 1–15.

    Google Scholar 

  • Alves, A., Phillips, A. J. L., Henriques, I., & Correia, A. (2007). Rapid differentiation of species of Botryosphaeriaceae by PCR fingerprinting. Research in Microbiology, 158, 112–121.

    Article  PubMed  CAS  Google Scholar 

  • Azouaoui-Idjer, G., Della Rocca, G., Pecchioli, A., Bouznad, Z., & Danti, R. (2012). First report of Botryosphaeria iberica associated with dieback and tree mortality of monterey cypress (Cupressus macrocarpa) in Algeria. Plant Disease, 96, 1073.

    Article  Google Scholar 

  • Barr, M. E. (1987). Prodromus to class Loculoascomycetes. Amherst, Massachusetts: Publ. by the author.

  • Bettucci, L., Alonso, R., & Tiscornia, S. (1999). Endophytic mycobiota of healthy twigs and the assemblage of species associated with twig lesions of Eucalyptus globulus and E. grandis in Uruguay. Mycological Research, 103, 468–472.

    Article  Google Scholar 

  • Bettucci, L., Simeto, S., Alonso, R., & Lupo, S. (2004). Endophytic fungi of twigs and leaves of three native species of Myrtaceae in Uruguay. Sydowia, 56, 8–23.

    Google Scholar 

  • Crous, P. W., Slippers, B., Wingfield, M. J., Rheeder, J., Marasas, W. F. O., Phillips, A. J. L., et al. (2006). Phylogenetic lineages in the Botryosphaeriaceae. Studies in Mycology, 55, 235–253.

    Article  PubMed  Google Scholar 

  • Damm, U., Crous, P. W., & Fourie, P. H. (2007). Botryosphaeriaceae as potential pathogens of Prunus species in South Africa, with descriptions of Diplodia africana and Lasiodiplodia plurivora sp. nov. Mycologia, 99, 664–680.

    Article  PubMed  CAS  Google Scholar 

  • De Wet, J., Slippers, B., Preisig, O., Wingfield, B. D., & Wingfield, M. J. (2008). Phylogeny of the Botryosphaeriaceae reveals patterns of host association. Molecular Phylogenetics and Evolution, 46, 116–126.

    Article  PubMed  Google Scholar 

  • De Wet, J., Slippers, B., Preisig, O., Wingfield, B. D., Tsopelas, P., & Wingfield, M. J. (2009). Molecular and morphological characterization of Dothiorella casuarini sp. nov. and other Botryosphaeriaceae with diplodia-like conidia. Mycologia, 101, 503–511.

    Article  PubMed  Google Scholar 

  • Eldridge, K. G. (1961). Significance of Diplodia pinea in plantations. Review of Applied Mycology, 41, 339.

    Google Scholar 

  • Encinas, M. (2001). Association of Diplodia mutila with blue stain of Caribbean pine in Venezuela. Forest Pathology, 31, 187–189.

    Article  Google Scholar 

  • Farr, D. F., & Rossman, A. Y. (2012). Fungal databases, systematic mycology and microbiology laboratory, ARS, USDA. http://nt.ars-grin.gov/fungaldatabases/. Accessed 5 September 2012.

  • Flowers, J., Hartman, J., & Vaillancourt, L. (2003). Detection of latent Sphaeropsis sapinea infections in Austrian pine tissues using nested polymerase chain reaction. Phytopathology, 93, 1471–1477.

    Article  PubMed  CAS  Google Scholar 

  • Funk, A. (1964). Botryosphaeria tsugae n. sp. causing dieback of western hemlock in British Columbia. Canadian Journal of Botany, 42, 769–775.

    Article  Google Scholar 

  • Gadgil, P. D. (2005). Fungi on trees and shrubs in New Zealand. Fungi of New Zealand Volume 4. Hong Kong: Fungal Diversity Press.

    Google Scholar 

  • Golzar, H., & Burgess, T. I. (2011). Neofusicoccum parvum, a causal agent associated with cankers and decline of Norfolk Island pine in Australia. Australasian Plant Pathology, 40, 484–489.

    Article  Google Scholar 

  • Gure, A., Slippers, B., & Stenlid, J. (2005). Seed-borne Botryosphaeria spp. from native Prunus and Podocarpus trees in Ethiopia, with a description of the anamorph Diplodia rosulata sp. nov. Mycological Research, 109, 1005–1014.

    Article  PubMed  Google Scholar 

  • Hillis, D. M., & Bull, J. J. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology, 42, 182–192.

    Google Scholar 

  • Inderbitzin, P., Bostock, R. M., Trouillas, F. P., & Michailides, T. J. (2010). A six locus phylogeny reveals high species diversity in Botryosphaeriaceae from California almond. Mycologia, 102, 1350–1368.

    Article  PubMed  CAS  Google Scholar 

  • Lazzizera, C., Frisullo, S., Alves, A., Lopes, J., & Phillips, A. J. L. (2008). Phylogeny and morphology of Diplodia species on olives in southern Italy and description of Diplodia olivarum. Fungal Diversity, 31, 63–71.

    Google Scholar 

  • Li, S. B., Li, J. Z., Li, S. C., Lu, Z. H., Wang, J. H., & Zhang, H. (2010). First report of Neofusicoccum parvum causing dieback disease of Chinese weeping cypress in China. Plant Disease, 94, 641.

    Article  Google Scholar 

  • Linaldeddu, B. T., Scanu, B., & Franceschini, A. (2010). First report of Diplodia scrobiculata causing canker and branch dieback on strawberry tree (Arbutus unedo) in Italy. Plant Disease, 94, 919.

    Article  Google Scholar 

  • Linaldeddu, B. T., Scanu, B., Maddau, L., & Franceschini, A. (2011). Diplodia africana causing dieback disease on Juniperus phoenicea: a new host and first report in the northern hemisphere. Phytopathologia Mediterranea, 50, 473–477.

    Google Scholar 

  • Ma, Z., & Michailides, T. J. (2002). Characterization of Botryosphaeria dothidea isolates collected from pistachio and other plant hosts in California. Phytopathology, 92, 519–526.

    Article  PubMed  Google Scholar 

  • McDonald, V., & Eskalen, A. (2011). Botryosphaeriaceae species associated with avocado branch cankers in California. Plant Disease, 95, 1465–1473.

    Article  Google Scholar 

  • McKenzie, E. H. C., Buchanan, P. K., & Johnston, P. R. (2000). Checklist of fungi on Nothofagus species in New Zealand. New Zealand Journal of Botany, 38, 635–720.

    Article  Google Scholar 

  • Mohali, S. R., Slippers, B., & Wingfield, M. J. (2007). Identification of Botryosphaeriaceae from Eucalyptus, Acacia and Pinus in Venezuela. Fungal Diversity, 25, 103–125.

    Google Scholar 

  • Page, R. D. (1996). TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12, 357–358.

    PubMed  CAS  Google Scholar 

  • Pavlic, D., Wingfield, M. J., Barber, P., Slippers, B., Hardy, G. E., St, J., et al. (2008). Seven new species of the Botryosphaeriaceae from baobab and other native trees in Western Australia. Mycologia, 100, 851–866.

    Article  PubMed  Google Scholar 

  • Phillips, A. J. L., Alves, A., Correia, A., & Luque, J. (2005). Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs. Mycologia, 97, 513–529.

    Article  PubMed  Google Scholar 

  • Piškur, B., Pavlic, D., Slippers, B., Ogris, N., Maresi, G., Wingfield, M. J., et al. (2011). Diversity and pathogenicity of Botryosphaeriaceae on declining Ostrya carpinifolia in Slovenia and Italy following extreme weather conditions. European Journal of Forest Research, 130, 235–249.

    Article  Google Scholar 

  • Punithalingam, E., & Waterston, J. M. (1970). Diplodia pinea. Descriptions of pathogenic fungi and bacteria, No. 273. Commonwealth Mycological Institute, Kew, Surrey, England.

  • Rannala, B., & Yang, Z. (1996). Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution, 43, 304–311.

    Article  PubMed  CAS  Google Scholar 

  • Rodriguez, F., Oliver, J. F., Marin, A., & Medina, J. R. (1990). The general stochastic model of nucleotide substitutions. Journal of Theoretical Biology, 142, 485–501.

    Article  PubMed  CAS  Google Scholar 

  • Ronquist, F. R., & Huelsenbeck, J. P. (2003). MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574.

    Article  PubMed  CAS  Google Scholar 

  • Slippers, B., & Wingfield, M. J. (2007). Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact. Fungal Biology Reviews, 21, 90–106.

    Article  Google Scholar 

  • Slippers, B., Fourie, G., Crous, P. W., Coutinho, T. A., Wingfield, B. D., & Wingfield, M. J. (2004). Multiple gene sequences delimit Botryosphaeria australis sp. nov. from B. lutea. Mycologia, 96, 1030–1041.

    Article  PubMed  CAS  Google Scholar 

  • Slippers, B., Crous, P. W., Denman, S., Coutinho, T. A., Wingfield, B. D., & Wingfield, M. J. (2004). Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. Mycologia, 96, 83–101.

    Article  PubMed  CAS  Google Scholar 

  • Slippers, B., Summerel, B. A., Crous, P. W., Coutinho, T. A., Wingfield, B. D., & Wingfield, M. J. (2005). Preliminary studies on Botryosphaeria species from Southern Hemisphere conifers in Australasia and South Africa. Australasian Plant Pathology, 34, 213–220.

    Article  Google Scholar 

  • Slippers, B., Smit, W. A., Crous, P. W., Coutinho, T. A., Wingfield, B. D., & Wingfield, M. J. (2007). Taxonomy, phylogeny and identification of Botryosphaeriaceae associated with pome and stone fruit trees in South Africa and other regions of the world. Plant Pathology, 56, 128–139.

    Article  CAS  Google Scholar 

  • Smith, D. R., & Stanosz, G. R. (2001). Molecular and morphological differentiation of Botryosphaeria dothidea (anamorph Fusicoccum aesculi) from some other fungi with Fusicoccum anamorphs. Mycologia, 93, 505–515.

    Article  Google Scholar 

  • Stanosz, G. (1997). Sphaeropsis shoot blight and canker. In E. M. Hansen & K. J. Lewis (Eds.), Compendium of conifer diseases (pp. 42–43). MN: The American Phytopathological Society.

    Google Scholar 

  • Sutton, B. C. (1980). The coelomycetes. Kew, UK: Commonwealth Mycological Institute.

    Google Scholar 

  • Swofford, D. L. (2003). PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4.0. Sunderland, Massachusetts: Sinauer Associates.

    Google Scholar 

  • Taylor, K., Barber, P. A., Hardy, G. E. S. J., & Burgess, T. I. (2009). Botryosphaeriaceae from tuart (Eucalyptus gomphocephala) woodland, including the description of four new species. Mycological Research, 113, 337–353.

    Article  PubMed  CAS  Google Scholar 

  • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., & Higgins, D. G. (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876–4882.

    Article  PubMed  CAS  Google Scholar 

  • Úrbez-Torres, J. R., & Gubler, W. D. (2009). Pathogenicity of Botryosphaeriaceae species isolated from grapevine cankers in California. Plant Disease, 93, 584–592.

    Article  Google Scholar 

  • White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990). Amplified and direct sequencing of fungal ribosomal RNA genes for phylogenies. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, & T. J. White (Eds.), PCR protocols: A guide to methods and applications (pp. 315–322). San Diego: Academic.

    Google Scholar 

  • Young, N. D. & Healy, J. (2003). GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics, 4, art. 6.

    Google Scholar 

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Acknowledgments

Artur Alves was supported by the programme Ciência2008, co-funded by the Human Potential Operational Programme (National Strategic Reference Framework 2007–2013) and European Social Fund (EU). Carla Barradas was supported by a PhD grant from FCT (SFRH/BD/77939/2011).

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Alves, A., Barradas, C., Phillips, A.J.L. et al. Diversity of Botryosphaeriaceae species associated with conifers in Portugal. Eur J Plant Pathol 135, 791–804 (2013). https://doi.org/10.1007/s10658-012-0122-2

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