Abstract
Twenty-one nuclear-encoded microsatellites were isolated from an enriched genomic DNA library of coney, Cephalopholis fulva, and characterized in both C. fulva and red hind, Epinephelus guttatus. The microsatellites include 16 dinucleotide repeats, two trinucleotide repeats, and three tetranucleotide repeats. An additional 11 microsatellites, isolated originally from an enriched genomic DNA library of E. guttatus, were characterized in both E. guttatus and C. fulva. Both grouper species support important commercial and recreational fisheries in the western Atlantic along the coasts of North, Central, and South America.
References
Ferreira BP, Gaspar ALB, Marques S, Sadovy Y, Rocha L, Choat JH, Bertoncini AA, Craig M (2008) Cephalopholis fulva. In: IUCN 2008. 2008 IUCN red list of threatened species. http://www.iucnredlist.org
Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. Meth Enzymol 395:202–222. doi:10.1016/S0076-6879(05)95013-1
Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999) Universal linker and ligation procedures for the construction of genomic DNA libraries enriched for microsatellites. Biotechniques 27:500–507
Lewis PO, Zaykin D (2001) GENETIC DATA ANALYSIS: computer program for the analysis of allelic data. Version 1.0 (d16c). Free program distributed by the authors via the internet from http://hydrodictyon.eeb.uconn.edu/people/plewis/software.php
Makova KD, Patton JC (1998) Increased yield of tri- and tetranucleotide heterospecific microsatellites from unenriched small insert libraries. Biotechniques 24:38–43
Nemeth RS (2005) Population characteristics of a recovering US virgin Islands red hind spawning aggregation following protection. Mar Ecol Prog Ser 286:81–97. doi:10.3354/meps286081
Ramirez MA, Patricia-Acevedo J, Planas S, Carlin JL, Funk SM, McMillan WO (2006) New microsatellite resources for groupers (Serranidae). Mol Ecol Notes 6:813–817. doi:10.1111/j.1471-8286.2006.01354.x
Rice WR (1989) Analyzing tables of statistical tests. Evol Int J Org Evol 43:223–225. doi:10.2307/2409177
Sadovy Y, Rocha L, Choat JH, Bertoncini AA, Ferreira BP, Craig M (2008) Epinephelus guttatus. In: IUCN 2008. 2008 IUCN red list of threatened species. http://www.iucnredlist.org
St. John J, Quinn TW (2008) Rapid capture of DNA targets. Biotechniques 44:259–264. doi:10.2144/000112633
Van Oosterhout C, Hutchinson WF, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538. doi:10.1111/j.1471-8286.2004.00684.x
Ward RD (2000) Genetics in fisheries management. Hydrobiologia 420:191–201. doi:10.1023/A:1003928327503
Acknowledgments
We thank H. Rivera and W. Tobias for sampling in St. Croix and D. Matos-Caraballo and L. Rivera-Padilla for sampling in Puerto Rico. Work was supported by the Cooperative Research Program (CRP) of the US Department of Commerce (Grant NA08-NMF-4540400) and by the Texas AgriLIFE Research (Project H-6703). This paper is number 67 in the series ‘Genetic Studies in Marine Fishes’ and Contribution No. 167 of the Center for Biosystematics and Biodiversity at Texas A & M University.
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Renshaw, M.A., Portnoy, D.S. & Gold, J.R. PCR primers for nuclear-encoded microsatellites of the groupers Cephalopholis fulva (coney) and Epinephelus guttatus (red hind). Conserv Genet 11, 1197–1202 (2010). https://doi.org/10.1007/s10592-009-9918-9
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DOI: https://doi.org/10.1007/s10592-009-9918-9