Skip to main content

Advertisement

Log in

Isolation and characterization of 21 microsatellite loci in Lycium chinense and cross-amplification in Lycium barbarum

  • Technical Note
  • Published:
Conservation Genetics Aims and scope Submit manuscript

Abstract

The present study reports isolation and characterization of 21 polymorphic microsatellite markers developed from Lycium chinense Mill. These markers produced a total of 86 alleles across 30 L. chinense accessions, with an average of 4.1 alleles per locus. Values for observed heterozygosity and polymorphism information content ranged from 0.03 to 0.81 (mean = 0.35) and from 0.03 to 0.78 (mean = 0.31), respectively. At the significance threshold (P < 0.05), 12 loci deviated from Hardy–Weinberg equilibrium, whereas significant linkage disequilibrium values were observed between 52 pairs of loci. All loci were successfully amplified for all L. barbarum accessions. These newly developed polymorphic microsatellite markers will be very useful for programming in the genetic conservation and classification of L. chinense and L. barbarum.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Fukuda T, Yokoyama J, Ohashi H (2001) Phylogeny and biogeography of the genus Lycium (Solanaceae): inferences from chloroplast DNA sequences. Mol Phylogenet Evol 19:246–258. doi:10.1006/mpev.2001.0921

    Article  CAS  PubMed  Google Scholar 

  • Gwag JG, Chung JW, Chung HK, Lee JH, Ma KH, Dixit A, Park YJ, Cho EG, Kim TS, Lee SH (2006) Characterization of new microsatellite markers in mung bean, Vigna radiata (L.). Mol Ecol Notes 6:1132–1134. doi:10.1111/j.1471-8286.2006.01461.x

    Article  CAS  Google Scholar 

  • Kim KY (2004) Developing a one step program (SSR Manager) for rapid identification of clones with SSRs and primer design. MS thesis, Seoul National University, Seoul, The Republic of Korea

  • Lee JR, Hong GY, Dixit A, Chung JW, Ma KH, Lee JH, Kang HK, Cho YH, Gwag JG, Park YJ (2008) Characterization of microsatellite loci developed for Amaranthus hypochondriacus and their cross-amplifications in wild species. Conserv Genet 9:243–246. doi:10.1007/s10592-007-9323-1

    Article  CAS  Google Scholar 

  • Liu K, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Oxford University Press, Oxford, pp 2128–2129

    Google Scholar 

  • Miller JS (2002) Phylogenetic relationships and the evolution of gender dimorphism in Lycium (Solanaceae). Syst Bot 27:416–428

    Google Scholar 

  • Park SY, Kim H, Lee BC, Sung CK, Lim YP (1996) Identification and classification of Lycium chinense Mill cultivars by RAPD analysis. Korean J Breed 28:221–226

    Google Scholar 

  • Peakall ROD, Smouse PE (2006) Genalex 6: genetic analysis in Excel Population genetic software for teaching and research. Mol Ecol Notes 6:288–295. doi:10.1111/j.1471-8286.2005.01155.x

    Article  Google Scholar 

  • Pharmacopoeia Commission of PRC (2000) Pharmacopoeia of the People’s Republic of China. Chemical Industry Press, Beijing, p 80

    Google Scholar 

  • Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18:233–234. doi:10.1038/72708

    Article  CAS  PubMed  Google Scholar 

  • Yin X-L, Fang K-T, Liang Y-Z, Wong RN, Ha AW (2005) Assessing phylogenetic relationships of Lycium samples using RAPD and entropy theory. Acta Pharmacol Sin 26:1217–1224. doi:10.1111/j.1745-7254.2005.00197.x

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This study was supported by Biogreen 21 project (#20080401034058) of the Rural Development Administration (RDA) and a grant (Code #200803101010290) from National Institute of Agricultural Biotechnology, RDA, Republic of Korea.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kyung-Ho Ma.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kwon, SJ., Lee, GA., Lee, SY. et al. Isolation and characterization of 21 microsatellite loci in Lycium chinense and cross-amplification in Lycium barbarum . Conserv Genet 10, 1557 (2009). https://doi.org/10.1007/s10592-008-9792-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s10592-008-9792-x

Keywords

Navigation