Skip to main content
Log in

Conservation genetics and Pacific fisheries bycatch: Mitochondrial differentiation and population assignment in black-footed albatrosses (Phoebastria nigripes)

  • Published:
Conservation Genetics Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • JC Avise D Walker (1998) ArticleTitlePleistocene phylogeographic effects on avian populations and the speciation process Proc. R. Soc. Lon. B 265 457–463 Occurrence Handle1:STN:280:DyaK1c3jtFWhsQ%3D%3D

    CAS  Google Scholar 

  • MA Banks W Eichert (2000) ArticleTitleWHICHRUN (version 3.2): A computer program for population assignment of individuals based on multilocus genotype data J. Hered. 91 87–89 Occurrence Handle1:STN:280:DC%2BD3c3gtFOntg%3D%3D Occurrence Handle10739137

    CAS  PubMed  Google Scholar 

  • P Beerli J Felsenstein (1999) ArticleTitleMaximum likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach Genetics 152 763–773 Occurrence Handle1:STN:280:DyaK1M3ot1Gitg%3D%3D Occurrence Handle10353916

    CAS  PubMed  Google Scholar 

  • P Beerli J Felsenstein (2001) ArticleTitleMaximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach Proc. Natl Acad. Sci. USA 98 4563–4568 Occurrence Handle10.1073/pnas.081068098 Occurrence Handle1:CAS:528:DC%2BD3MXjtVagtLY%3D Occurrence Handle11287657

    Article  CAS  PubMed  Google Scholar 

  • BirdLife International (2003) Phoebastria nigripes. In: 2003 IUCN Redlist of Threatened Species, www.redlist.org (ed. IUCN). The World Conservation Union, Gland, Switzerland

  • BW Bowen FA Abreu-Grobois GH Balazs N Kamezaki CJ Limpus RJ Ferl (1995) ArticleTitleTrans-Pacific migrations of the loggerhead turtle (Caretta caretta) demonstrated with mitochondrial DNA markers PNAS 92 3731–3734 Occurrence Handle1:CAS:528:DyaK2MXlsVSltb0%3D Occurrence Handle7731974

    CAS  PubMed  Google Scholar 

  • V Bretagnolle C Attié E Pasquet (1998) ArticleTitleCytochrome b evidence for validity and phylogenetic relationships of Pseudobulweria and Bulweria (Procellariidae) Auk 115 188–195

    Google Scholar 

  • Brothers NP, Cooper J, Lokkeborg S (1999) The incidental catch of seabirds by longline fisheries: Worldwide review and technical guidelines for mitigation, 100 pp. FAO Fisheries Circular No. 937. Food and Agriculture Organization of the United Nations, Rome

  • TM Burg JP Croxall (2004) ArticleTitleGlobal population structure and taxonomy of the wandering albatross species complex Mol. Ecol. 13 2345–2355 Occurrence Handle1:CAS:528:DC%2BD2cXmsl2rurc%3D Occurrence Handle15245406

    CAS  PubMed  Google Scholar 

  • K Cousins J Cooper (2000) The Population Biology of the Black-Footed Albatross in Relation to Mortality Caused by Longline Fishing Western Pacific Regional Fishery Management Honolulu

    Google Scholar 

  • KA Crandall AR Templeton (1993) ArticleTitleEmpirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction Genetics 134 959–969 Occurrence Handle1:STN:280:ByyA2M7os1E%3D Occurrence Handle8349118

    CAS  PubMed  Google Scholar 

  • MC Double R Gales T Reid N Brothers CL Abbott (2003) ArticleTitleMorphometric comparison of Australian shy and New Zealand white-capped albatrosses Emu 103 287–294

    Google Scholar 

  • SV Edwards P Beerli (2000) ArticleTitlePerspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies Evolution 54 1839–1854 Occurrence Handle1:STN:280:DC%2BD3M3jt1Kjsw%3D%3D Occurrence Handle11209764

    CAS  PubMed  Google Scholar 

  • SV Edwards MC Silva VL Friesen KI Warheit (2001) Molecular genetic markers in the analysis of seabird bycatch populations E. Melvin J Parrish (Eds) Seabird Bycatch Trends Roadblocks and Solutions University of Alaska Sea Grant Anchorage 115–140

    Google Scholar 

  • MDB Eldridge JM King AK Loupis PBS Spences AC Taylor LC Pope GP Hall (1999) ArticleTitleUnprecedented low levels of genetic variation and inbreeding depression in an island population of the black-footed rock-wallaby Cons. Biol. 13 531–541

    Google Scholar 

  • B Ewing P Green (1998) ArticleTitleBasecalling of automated sequencer traces using phred. II. Error probabilities Genome Res. 8 186–194 Occurrence Handle1:CAS:528:DyaK1cXitlWlu7g%3D Occurrence Handle9521922

    CAS  PubMed  Google Scholar 

  • B Ewing L Hillier M Wendl P Green (1998) ArticleTitleBasecalling of automated sequencer traces using phred. I. Accuracy assessment Genome Res. 8 175–185 Occurrence Handle1:CAS:528:DyaK1cXitlWlu78%3D Occurrence Handle9521921

    CAS  PubMed  Google Scholar 

  • L Excoffier (2001) Analysis of population subdivision DJ Balding M Bishop C Cannings (Eds) Handbook of Statistical Genetics John Wiley and Sons Chichester UK 271–307

    Google Scholar 

  • L Excoffier PE Smouse JM Quattro (1992) ArticleTitleAnalysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data Genetics 131 479–491 Occurrence Handle1:CAS:528:DyaK38XlsVCntro%3D Occurrence Handle1644282

    CAS  PubMed  Google Scholar 

  • HA Fisher (1976) ArticleTitleSome dynamics of a breeding colony of Laysan albatrosses Wilson Bull. 88 121–142

    Google Scholar 

  • R Frankham (1995) ArticleTitleEffective population size/adult population size ratios in wildlife: A review Genet. Res. 66 95–107

    Google Scholar 

  • YX Fu WH Li (1993) ArticleTitleStatistical tests of neutrality of mutations Genetics 133 693–709 Occurrence Handle1:STN:280:ByyB3c3kvVU%3D Occurrence Handle8454210

    CAS  PubMed  Google Scholar 

  • R Gales (1998) Albatross populations: status and threats G Robertson R Gales (Eds) Albatross Biology and Conservation Surrey Beatty and Sons Chipping Norton 20–45

    Google Scholar 

  • E Gilman H Freifeld (2003) ArticleTitleSeabird mortality in North Pacific longline fisheries Endangered Species Update 20 35–46

    Google Scholar 

  • Gordon D C Abajian P Green (1998) ArticleTitleCONSED: A graphical tool for sequence finishing Genome Res. 8 195–202 Occurrence Handle1:CAS:528:DyaK1cXitlWksr0%3D Occurrence Handle9521923

    CAS  PubMed  Google Scholar 

  • J Goudet M Raymond T Meeüs Particlede F Rousset (1996) ArticleTitleTesting differentiation in diploid populations Genetics 144 1933–1940 Occurrence Handle1:STN:280:ByiC3s3mt1A%3D Occurrence Handle8978076

    CAS  PubMed  Google Scholar 

  • Green P (1994) PHRAP. Unpublished, available for download at http://www.genome.washington.edu/UWGC/analysistools/phrap.htm

  • Ito J, Shaw W, Burgner RL (eds.) (1993) Symposium on biology, distribution and stock assessment of species caught in the high seas driftnet fisheries in the North Pacific Ocean. Int. N. Pac. Fish. Comm. Bulletin 53. Sydney, British Columbia

  • M Kimura (1980) ArticleTitleA simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences J. Mol. Evol. 16 111–120

    Google Scholar 

  • JFC Kingman (1982) ArticleTitleThe coalescent Stochastic Processes Appl. 13 235–248

    Google Scholar 

  • RL Lewison LB Crowder (2003) ArticleTitleEstimating fishery bycatch and effects on a vulnerable seabird population Ecol. Appl. 13 743–753

    Google Scholar 

  • E Mayr (1963) Animal Species and Evolution Harvard University Press Cambridge

    Google Scholar 

  • M Nei WH Li (1979) ArticleTitleMathematical model for studying genetic variation in terms of restriction endonucleases Proc. Natl Acad. Sci. USA 76 5269–5273 Occurrence Handle1:CAS:528:DyaL3cXitVWn Occurrence Handle291943

    CAS  PubMed  Google Scholar 

  • GB Nunn SE Stanley (1998) ArticleTitleBody size effects and rates of cytochrome b evolution in tube-nosed seabirds Mol. Biol. Evol. 15 1360–1371 Occurrence Handle1:CAS:528:DyaK1cXms1eks7c%3D Occurrence Handle9787440

    CAS  PubMed  Google Scholar 

  • GB Nunn J Cooper P Jouventin CJR Robertson GC Robertson (1996) ArticleTitleEvolutionary relationships among extant albatrosses (Procellariiformes: Diomedeidae) established from complete cytochrome b gene sequences Auk 113 784–801

    Google Scholar 

  • J Penhallurick M Wink (2004) ArticleTitleAnalysis of the taxonomy and nomenclature of the Procellariiformes based on complete nucleotide sequences of the mitochondrial cytochrome b gene Emu 104 125–147 Occurrence Handle1:CAS:528:DC%2BD2cXltVOns7g%3D

    CAS  Google Scholar 

  • M Raymond F Rousset (1995) ArticleTitleAn exact test for population differentiation Evolution 49 1280–1283

    Google Scholar 

  • DW Rice KW Kenyon (1962) ArticleTitleBreeding distribution, history and populations of North Pacific albatrosses Auk 79 365–386

    Google Scholar 

  • J Rozas JC Sánchez-DelBarrio X Messeguer R Rozas (2003) ArticleTitleDnaSP, DNA polymorphism analyses by the coalescent and other methods Bioinformatics 19 2496–2497 Occurrence Handle10.1093/bioinformatics/btg359 Occurrence Handle1:CAS:528:DC%2BD3sXpvVSisLo%3D Occurrence Handle14668244

    Article  CAS  PubMed  Google Scholar 

  • J Sambrook EF Fritsch T Maniatis (1989) Molecular Cloning: A Laboratory Manual EditionNumber2 Cold Spring Harbor Laboratory Press New York

    Google Scholar 

  • S Schneider D Roessli L Excoffier (2000) Arlequin ver. 2.000: A Software for Population Genetics Data Analysis Genetics and Biometry Laboratory University of Geneva, Switzerland

    Google Scholar 

  • Stehn RA, Rivera KS, Fitzgerald S, Wohl KD (2001) Incidental catch of seabirds by longline fisheries in Alaska. In: Seabird Bycatch: Trends, Roadblocks, and Solutions (eds. Melvin E, Parrish J), pp. 61–77. University of Alaska Sea Grant, Anchorage

  • F Tajima (1989) ArticleTitleStatistical method for testing the neutral mutation hypothesis by DNA polymorphism Genetics 123 585–595 Occurrence Handle1:CAS:528:DyaK3cXhslentA%3D%3D Occurrence Handle2513255

    CAS  PubMed  Google Scholar 

  • USFWS (2004) News Release: Massive Albatross Nest Count Completed at Midway Atoll National Wildlife Refuge, pp. 1–2. Pacific Islands External Affairs Office, Honolulu

  • HE Walsh VL Friesen (2003) ArticleTitleA comparison of intraspecific patterns of DNA sequence variation in mitochondrial DNA, α-enolase, and MHC class II B loci in auklets (Charadriiformes: Alcidae) J. Mol. Evol. 57 681–693 Occurrence Handle1:CAS:528:DC%2BD2cXjsVemtg%3D%3D Occurrence Handle14745537

    CAS  PubMed  Google Scholar 

  • J Warham (1990) The Petrels: Their Ecology and Breeding Systems Academic Press San Diego, CA

    Google Scholar 

  • SK Wasser AM Shedlock K Comstock EA Ostrander B Mutayoba M Stephens (2004) ArticleTitleAssigning African elephant DNA to geographic region of origin: applications to the ivory trade Proc. Natl Acad. Sci. USA 101 14847–14852 Occurrence Handle1:CAS:528:DC%2BD2cXovVyisrw%3D Occurrence Handle15459317

    CAS  PubMed  Google Scholar 

  • GA Watterson HA Guess (1977) ArticleTitleIs the most frequent allele the oldest? Theor Pop. Biol. 11 141–160 Occurrence Handle1:STN:280:CSiC1MngtFw%3D

    CAS  Google Scholar 

  • SM Waugh PA Prince H Weimerskirch (1999) ArticleTitleGeographical variation in morphometry of black-browed and grey-headed albatrosses from four sites Polar Biol. 22 189–194

    Google Scholar 

  • Whittow GC (1993) Black-footed Albatross (Diomedia nigripes). In: The Birds of North America, No. 65 (eds. Poole A, Gill F). The Birds of North America, Inc., Philadelphia

  • S Wright (1969) Evolution and the Genetics of Populations, Vol. 2 , The Theory of Gene Frequencies University of Chicago Press Chicago

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to H. E. Walsh.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Walsh, H.E., Edwards, S.V. Conservation genetics and Pacific fisheries bycatch: Mitochondrial differentiation and population assignment in black-footed albatrosses (Phoebastria nigripes). Conserv Genet 6, 289–295 (2005). https://doi.org/10.1007/s10592-004-7824-8

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10592-004-7824-8

Keywords

Navigation