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Comparative chromosome painting map between two Ryukyu spiny rat species, Tokudaia osimensis and Tokudaia tokunoshimensis (Muridae, Rodentia)

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Abstract

Ryukyu spiny rats (genus Tokudaia) are indigenous species that are confined to three islands of the Nansei Shoto archipelago, Amami-Oshima, Tokunoshima and Okinawa-jima, Japan. Tokudaia tokunoshimensis from Tokunoshima Island and Tokudaia osimensis from Amami-Oshima Island are closely related taxonomically, although their karyotypes are quite different: the diploid chromosome numbers and sex chromosome constitution are 2n = 45, X0/X0 for T. tokunoshimensis and 2n = 25, X0/X0 for T. osimensis. We conducted comparative chromosome painting with chromosome-specific DNA probes of the laboratory mouse (Mus musculus) to molecularly examine the chromosome homology between T. tokunoshimensis and T. osimensis, and deduced a possible ancestral karyotype of Tokudaia species and the process of evolutionary chromosome rearrangements. The proposed ancestral karyotype with the diploid number of 2n = 48, XX/XY was similar to the karyotype of T. tokunoshimensis, and the karyotype of T. osimensis would then have been established through at least 14 chromosomal changes, mainly centric fusion and tandem fusion, from the ancestral karyotype. The close karyological relationship between the ancestral karyotypes of Tokudaia and Apodemus also suggests that the chromosomal evolution in the Tokudaia-Apodemus lineage has been very slow and has accelerated only recently in the branch leading to T. osimensis.

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References

  • Arakawa Y, Nishida-Umehara C, Matsuda Y, Sutou S, Suzuki H (2002) X-chromosomal localization of mammalian Y-linked genes in two XO species of the Ryukyu spiny rat. Cytogenet Genome Res 99: 303–309.

    Article  PubMed  CAS  Google Scholar 

  • Carbone L, Nergadze SG, Magnani E et al. (2006) Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics 87: 777–782.

    Article  PubMed  CAS  Google Scholar 

  • Cavagna P, Stone G, Stanyon R (2002) Black rat (Rattus rattus) genomic variability characterized by chromosome painting. Mamm Genome 13: 157–163.

    PubMed  CAS  Google Scholar 

  • Eder V, Ventura M, Ianigro M, Teti M, Rocchi M, Archidiacono N (2003) Chromosome 6 phylogeny in primates and centromere repositioning. Mol Biol Evol 20: 1506–1512.

    Article  PubMed  CAS  Google Scholar 

  • Engelbrecht A, Dobigny G, Robinson TJ (2006) Further insights into the ancestral murine karyotype: the contribution of the Otomys–Mus comparison using chromosome painting. Cytogenet Genome Res 112: 126–130.

    Article  PubMed  CAS  Google Scholar 

  • Endo H, Tsuchiya K (2006) A new species of Ryukyu spiny rat, Tokudaia (Muridae: Rodentia), from Tokunoshima Island, Kagoshima prefecture, Japan. Mamm Study 31: 47–57.

    Article  Google Scholar 

  • Ferreri GC, Liscinsky DM, Mack JA, Eldridge MDB, O’Neill RJ (2005) Retention of latent centromeres in the mammalian genome. J Hered 96: 217–224.

    Article  PubMed  CAS  Google Scholar 

  • Grützner F, Himmelbauer H, Paulsen M, Ropers H-H, Haaf T (1999) Comparative mapping of mouse and rat chromosomes by fluorescence in situ hybridization. Genomics 55: 306–313.

    Article  PubMed  Google Scholar 

  • Guilly M-N, Fouchet P, de Chamisso P, Schmitz A, Dutrillaux B (1999) Comparative karyotype of rat and mouse using bidirectional chromosome painting. Chromosome Res 7: 213–221.

    Article  PubMed  CAS  Google Scholar 

  • Honda T, Suzuki H, Itoh M (1977) An unusual sex chromosome constitution found in the Amami spinous country-rat, Tokudaia osimensis osimensis. Jpn J Genet 52: 247–249.

    Google Scholar 

  • Honda T, Suzuki H, Itoh M, Hayashi K (1978) Karyotypical differences of the Amami spinous country-rats, Tokudaia osimensis osimensis obtained from two neighbouring islands. Jpn J Genet 53: 297–299.

    Google Scholar 

  • Johnson DH (1946) The spiny rat of the Riu Kiu islands. Proc Biol Soc Washington 59: 169–172.

    Google Scholar 

  • Kobayashi T, Yamada F, Hashimoto T, Abe S, Matsuda Y, Kuroiwa A (2007) Exceptional minute sex-specific region in the X0 mammal, Ryukyu spiny rat. Chromosome Res 15: 175–187.

    Article  PubMed  CAS  Google Scholar 

  • Matsubara K, Nishida-Umehara C, Kuroiwa A, Tsuchiya K, Matsuda Y (2003) Identification of chromosome rearrangements between the laboratory mouse (Mus musculus) and the Indian spiny mouse (Mus platythrix) by comparative FISH analysis. Chromosome Res 11: 57–64.

    Article  PubMed  CAS  Google Scholar 

  • Matsubara K, Nishida-Umehara C, Tsuchiya K, Nukaya D, Matsuda Y (2004) Karyotypic evolution of Apodemus (Muridae, Rodentia) inferred from comparative FISH analyses. Chromosome Res 12: 383–395.

    Article  PubMed  CAS  Google Scholar 

  • Matsuda Y, Chapman VM (1995) Application of fluorescence in situ hybridization in genome analysis of the mouse. Electrophoresis 16: 261–272.

    Article  PubMed  CAS  Google Scholar 

  • Matsuda Y, Harada YN, Natsuume-Sakaki S, Lee K, Shiomi T, Chapman VM (1992) Location of the mouse complement factor H gene (cfh) by FISH analysis and replication R-banding. Cytogenet Cell Genet 61: 282–285.

    Article  PubMed  CAS  Google Scholar 

  • Michaux JR, Chevret P, Filippucci M-G, Macholan M (2002) Phylogeny of the genus Apodemus with a special emphasis on the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers: cytochrome b and 12S rRNA. Mol Phylogenet Evol 23: 123–136.

    Article  PubMed  CAS  Google Scholar 

  • Rambau RV, Robinson TJ (2003) Chromosome painting in the African four-striped mouse Rhabdomys pumilio: detection of possible murid specific contiguous segment combinations. Chromosome Res 11: 91–98.

    Article  PubMed  CAS  Google Scholar 

  • Sato JJ, Suzuki H (2004) Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the Cytb gene, RAG1, and IRBP. Can J Zool 82: 1343–1351.

    Article  CAS  Google Scholar 

  • Soullier S, Hanni C, Catzeflis F, Berta P, Laudet V (1998) Male sex determination in the spiny rat Tokudaia osimensis (Rodentia: Muridae) is not Sry dependent. Mamm Genome 9: 590–592.

    Article  PubMed  CAS  Google Scholar 

  • Stanyon R, Yang F, Cavagna P et al. (1999) Reciprocal chromosome painting shows that genomic rearrangement between rat and mouse proceeds ten times faster than between humans and cats. Cytogenet Cell Genet 84: 150–155.

    Article  PubMed  CAS  Google Scholar 

  • Stanyon R, Yang F, Morescalchi AM, Galleni L (2004) Chromosome painting in the long-tailed field mouse provides insights into the ancestral murid karyotype. Cytogenet Genome Res 105: 406–411.

    Article  PubMed  CAS  Google Scholar 

  • Sutou S, Mitsui Y, Tsuchiya K (2001) Sex determination without the Y chromosome in two Japanese rodents Tokudaia osimensis osimensis and Tokudaia osimensis spp. Mamm Genome 12: 17–21.

    Article  PubMed  CAS  Google Scholar 

  • Suzuki H, Iwasa MA, Ishii N, Nagaoka H, Tsuchiya K (1999) The genetic status of two insular populations of the endemic spiny rat Tokudaia osimensis (Rodentia, Muridae) of the Ryukyu Islands, Japan. Mamm Study 24: 43–50.

    Google Scholar 

  • Suzuki H, Tsuchiya K, Takezaki N (2000) A molecular phylogenetic framework for the Ryukyu endemic rodents Tokudaia osimensis and Diplothrix legata. Mol Phylogenet Evol 15: 15–24.

    Article  PubMed  CAS  Google Scholar 

  • Suzuki H, Sato JJ, Tsuchiya K et al. (2003) Molecular phylogeny of wood mice (Apodemus, Muridae) in East Asia. Biol J Linn Soc 80: 469–481.

    Article  Google Scholar 

  • Tsuchiya K, Wakana S, Suzuki H, Hattori S, Hayashi Y (1989) Taxonomic study of Tokudaia (Rodentia: Muridae): I. Genetic differentiation. Mem Natl Sci Museum, Tokyo 22: 227–234 [in Japanese with English abstract].

    Google Scholar 

  • Ventura M, Archidiacono N, Rocchi M (2001) Centromere emergence in evolution. Genome Res 11: 595–599.

    Article  PubMed  CAS  Google Scholar 

  • Yang F, O’Brien PCM, Ferguson-Smith MA (2000) Comparative chromosome map of the laboratory mouse and Chinese hamster defined by reciprocal chromosome painting. Chromosome Res 8: 219–227.

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Yoichi Matsuda.

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Nakamura, T., Kuroiwa, A., Nishida-Umehara, C. et al. Comparative chromosome painting map between two Ryukyu spiny rat species, Tokudaia osimensis and Tokudaia tokunoshimensis (Muridae, Rodentia). Chromosome Res 15, 799–806 (2007). https://doi.org/10.1007/s10577-007-1163-9

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  • DOI: https://doi.org/10.1007/s10577-007-1163-9

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