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An Interpretive Review of the Origin of Life Research

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Abstract

Life appears to be a natural property of matter, but the problem of its origin only arose after early scientists refuted continuous spontaneous generation. There is no chance of life arising ‘all at once’, we need the standard scientific incremental explanation with large numbers of small steps, an approach used in both physical and evolutionary sciences. The necessity for considering both theoretical and experimental approaches is emphasized. After describing basic principles that are available (including the Darwin-Eigen cycle), the search for origins is considered under four main themes. These are the RNA-world hypothesis; potential intermediates between an RNA-world and a modern world via the evolution of protein synthesis and then of DNA; possible alternatives to an RNA-world; and finally the earliest stages from the simple prebiotic systems to RNA. The triplicase/proto-ribosome theory for the origin of the ribosome is discussed where triples of nucleotides are added to a replicating RNA, with the origin of a triplet code well-before protein synthesis begins. The length of the code is suggested to arise from the early development of a ratchet mechanism that overcomes the problem of continued processivity of an RNA-based RNA-polymerase. It is probable that there were precursor stages to RNA with simpler sugars, or just two nucleotides, but we do not yet know of any better alternatives to RNA that were likely to arise naturally. For prebiotic stages (before RNA) a flow-reactor model is suggested to solve metabolism, energy gradients, and compartmentation simultaneously – thus the intense interest in some form of flow reactor. If an autocatalytic cycle could arise in such a system we would be major steps ahead. The most likely physical conditions for the origin of life require further clarification and it is still unclear whether the origin of life is more of an entropy (information) problem (and therefore high temperatures would be detrimental), rather than a kinetic problem (where high temperatures may be advantageous).

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References

  • W.J. Albery J.R. Knowles (1976) ArticleTitleEvolution of enzyme function and the development of enzyme efficiency Biochemistry 15 5631–5640

    Google Scholar 

  • A.D. Anbar A.H. Knoll (2002) ArticleTitleProterozoic ocean chemistry and evolution: a bioinorganic bridge? Science 297 1137–1142 Occurrence Handle10.1126/science.1069651

    Article  Google Scholar 

  • J.L. Bada A. Lazcano (2003) ArticleTitlePrebiotic soup – revisiting the Miller experiment Science 300 745–746 Occurrence Handle10.1126/science.1085145

    Article  Google Scholar 

  • J.L. Bada A. Lazcano (2002) ArticleTitleSome like it hotbut not the first molecules Science 296 1982–1983 Occurrence Handle10.1126/science.1069487

    Article  Google Scholar 

  • J.-P. Bibring Y. Langevin F. Poulet A. Gendrin B. Gondet M. Berthe A. Soufflot P. Drossart M. Combes G. Bellucci V. Moroz N. Mangold B. Schmitt InstitutionalAuthorNamethe OMEGA team (2004) ArticleTitlePerennial water ice identified in the south polar cap of Mars Nature 428 627–630 Occurrence Handle10.1038/nature02461

    Article  Google Scholar 

  • C.K. Biebricher W.C. Gardiner (1997) ArticleTitleMolecular evolution of RNA in vitro Biophys. Chem. 66 179–192 Occurrence Handle10.1016/S0301-4622(97)00059-8

    Article  Google Scholar 

  • M.C. Boerlijst P. Hogeweg (1995) ArticleTitleSpatial gradients enhance persistence of hypercycles Physica D 88 29–39 Occurrence Handle10.1016/0167-2789(95)00178-7

    Article  Google Scholar 

  • G. Caetano-Anolles D. Caetano-Anolles (2003) ArticleTitleAn evolutionarily structured universe of protein architecture Genome Res. 13 1563–1571 Occurrence Handle10.1101/gr.1161903

    Article  Google Scholar 

  • G. Camardi (1999) ArticleTitleCharles Lyell and the uniformity principle Biol. Phil. 14 537–560

    Google Scholar 

  • J.C. Chaput J.W. Szostak (2003) ArticleTitleTNA synthesis by DNA polymerases J. Am. Chem. Soc. 125 9274–9275

    Google Scholar 

  • I.A. Chen R.W. Roberts J.W. Szostak (2004) ArticleTitleThe emergence of competition between model protocells Science 305 1474–1476

    Google Scholar 

  • J.W. Chin A.T. Cropp J.C. Anderson M. Mukherji Z. Zhang P.G. Schultz (2003) ArticleTitleAn expanded eukaryotic genetic code Science 301 964–967 Occurrence Handle10.1126/science.1084772

    Article  Google Scholar 

  • D.J.-F. Chinnapen D. Sen (2004) ArticleTitleA deoxyribozyme that harnesses light to repair thymine dimers in DNA Proc. Natl. Acad. Sci. USA 101 65–69

    Google Scholar 

  • Conway Morris S. 2003. Life's Solutions: Inevitable Humans in a Lonely Universe. Cambridge University Press.

  • C. Darwin (1840) Voyage of the Beagle J. Murray London

    Google Scholar 

  • D.W. Deamer J.P. Dworkin S.A. Sandford M.P. Bernstein L.J. Allamandola (2002) ArticleTitleThe first cell membranes Astrobiology 2 371–381 Occurrence Handle10.1089/153110702762470482

    Article  Google Scholar 

  • J.A. Doudna T.R. Cech (2002) ArticleTitleThe chemical repertoire of ribozymes Nature 418 222–228 Occurrence Handle10.1038/418222a

    Article  Google Scholar 

  • M. Eigen (1992) Steps Toward Life: A Perspective on Evolution Oxford University Press Oxford

    Google Scholar 

  • M. Eigen P. Schuster (1977) ArticleTitleThe hypercycle: a principle of natural self-organization. Part A: Emergence of the hypercycle Naturwissenschaften 64 541–565 Occurrence Handle10.1007/BF00450633

    Article  Google Scholar 

  • E.H. Ekland D.P. Bartel (1996) ArticleTitleRNA-catalysed RNA polymerization using nucleoside triphosphates Nature 382 373–376 Occurrence Handle10.1038/382373a0

    Article  Google Scholar 

  • G. Ertem (2004) ArticleTitleMontmorilloniteoligonucleotides, RNA and the origin of life Origins Life Evol. Biosphere 34 549–570 Occurrence Handle10.1023/B:ORIG.0000043130.49790.a7

    Article  Google Scholar 

  • A. Eschenmoser (1999) ArticleTitleChemical etiology of nucleic acid structure Science 284 2118–2124 Occurrence Handle10.1126/science.284.5423.2118

    Article  Google Scholar 

  • J. Farley (1977) The spontaneous Generation Controversy from Descartes to Oparin The Johns Hopkins University Press Baltimore MD

    Google Scholar 

  • P. Forterre (1995) ArticleTitleThermoreduction, a hypothesis for the origin of prokaryotes C.R. Acad Sci Paris Life Sci. 318 415–422

    Google Scholar 

  • P. Forterre (2001) ArticleTitleGenomics and early cellular evolution: the origin of the DNA world C.R. Acad Sci. Paris, Life Sci. 324 1–10

    Google Scholar 

  • P. Forterre H. Philippe (1999) ArticleTitleWhere is the root or the universal tree of life? BioEssays 21 871–879 Occurrence Handle10.1002/(SICI)1521-1878(199910)21:10<871::AID-BIES10>3.0.CO;2-Q

    Article  Google Scholar 

  • Fox S.W. and Dose K. 1972. Molecular Evolution and the Origin of Life. WH Freeman.

  • K. Fredrick H.F. Noller (2003) ArticleTitleCatalysis of ribosomal translocation by sparsomycin Science 300 1159–1162 Occurrence Handle10.1126/science.1084571

    Article  Google Scholar 

  • P.P. Gardner B.R. Holland V. Moulton M.D. Hendy D. Penny (2003) ArticleTitleOptimal alphabets for an RNA world Proc. R. Soc. Lond. B 270 1177–1182 Occurrence Handle10.1098/rspb.2003.2355

    Article  Google Scholar 

  • Gesteland R.F. and Atkins J.F. 1993. The RNA world. Cold Spring Harbor Laboratory Press.

  • Glansdorff P. and Prigogine I. 1971. Thermodynamic Theory of Structure, Stability and Fluctuations. Wiley-Interscience.

  • K.H.J. Gordon (1995) ArticleTitleWere RNA replication and translation directly coupled in the RNA (+protein?) world? J. Theor. Biol. 173 179–193 Occurrence Handle10.1006/jtbi.1995.0054

    Article  Google Scholar 

  • H. Grosjean D.G. Soll D.M. Crothers (1976) ArticleTitleStudies of the complex between transfer RNAs with complementary anticodons J. Mol. Biol. 103 499–519 Occurrence Handle10.1016/0022-2836(76)90214-X

    Article  Google Scholar 

  • M.H. Hanczyc S.M. Fujikawa J.W. Szostak (2003) ArticleTitleExperimental models of primitive cellular compartments: encapsulation, growth and division Science 302 618–622 Occurrence Handle10.1126/science.1089904

    Article  Google Scholar 

  • L. Hoang K. Fredrick H.F. Noller (2004) ArticleTitleCreating ribosomes with an all-RNA 30S subunit P site Proc. Natl Acad. Sci. U.S.A. 101 12439–12443

    Google Scholar 

  • W. Hordijk M.A. Steel (2004) ArticleTitleDetecting autocatalytic, self-sustaining sets in chemical reaction systems J. Theor. Biol. 227 451–461 Occurrence Handle10.1016/j.jtbi.2003.11.020

    Article  Google Scholar 

  • V.R. Jadhav M. Yarus (2002) ArticleTitleCoenzymes as ribozymes Biochimie 84 877–888 Occurrence Handle10.1016/S0300-9084(02)01404-9

    Article  Google Scholar 

  • D.C. Jeffares A.M. Poole D. Penny (1998) ArticleTitleRelics from the RNA world J. Mol. Evol. 46 18–36

    Google Scholar 

  • G.F. Joyce (2004) ArticleTitleDirected evolution of nucleic acid enzymes Annu. Rev. Bio. 73 791–836

    Google Scholar 

  • G.F. Joyce (2002) ArticleTitleThe antiquity of RNA-based evolution Nature 418 214–221 Occurrence Handle10.1038/418214a

    Article  Google Scholar 

  • M.S. Lawrence D.P. Bartel (2003) ArticleTitleProcessivity of ribozyme catalyzed RNA polymerase Biochemistry 42 8748–8755 Occurrence Handle10.1021/bi034228l

    Article  Google Scholar 

  • M. Levy S.L. Miller (1998) ArticleTitleThe stability of the RNA bases: Implications for the origin of life Proc. Natl. Acad. Sci. U.S.A. 95 7933–7938

    Google Scholar 

  • M. Lynch J.S. Conery (2003) ArticleTitleThe origins of genome complexity Science 302 1401–1404 Occurrence Handle10.1126/science.1089370

    Article  Google Scholar 

  • D.A. Mac Dónaill D. Brocklebank (2003) ArticleTitleAn ab initio quantum mechanical investigation of the error-coding model of nucleotide alphabet composition Mol. Phys. 101 2755–2763

    Google Scholar 

  • W. Martin M.J. Russell (2003) ArticleTitleOn the origins of cells Phil. Trans. R. Soc. Lon. Ser. B 358 59–83

    Google Scholar 

  • K.E. McGinness M.C. Wright G.F. Joyce (2002) ArticleTitleContinuous in vitro evolution of a ribozyme that catalyzes three successive nucleotidyl addition reactions Chem. Biol. 9 585–596

    Google Scholar 

  • M. Meli B. Albert-Fournier M-C. Maurel (2001) ArticleTitleRecent findings in the modern RNA world Int. Microbiol. 4 5–11

    Google Scholar 

  • P.-A. Monnard C.L. Apel A. Kanavarioti D.W. Deamer (2002) ArticleTitleEffect of ionic inorganic solutes on self-assembly and polymerization processes related to early forms of life; Implications for a prebiotic aqueous medium Astrobiology 2 139–152 Occurrence Handle10.1089/15311070260192237

    Article  Google Scholar 

  • Morowitz H.J. 1992. Beginnings of Cellular life: Metabolism Recapitulates Biogenesis. Yale University Press.

  • H.J. Morowitz (1981) ArticleTitlePhase separation, charge separation and biogenesis BioSystems. 14 41–47 Occurrence Handle10.1016/0303-2647(81)90020-4

    Article  Google Scholar 

  • H.J. Morowitz J.D. Kostelnik J. Yang G.D. Cody (2000) ArticleTitleThe origin of intermediary metabolism Proc. Natl. Acad. Sci. USA. 97 7704–7708 Occurrence Handle10.1073/pnas.110153997

    Article  Google Scholar 

  • E Mossel M Steel (2005) ArticleTitleRandom biochemical networks: the probability of self-sustaining autocatalysis J. Theor. Biol. 233 327–336 Occurrence Handle10.1016/j.jtbi.2004.10.011

    Article  Google Scholar 

  • V. Moulton P.P. Gardner R.F. Pointon L.K. Creamer G.B. Jameson D. Penny (2000) ArticleTitleRNA folding argues against a hot-start origin of life J. Mol. Evol. 51 416–421

    Google Scholar 

  • J. Ninio (1982) Molecular Approaches to Evolution Pitman London

    Google Scholar 

  • C.D. Novina P.A. Sharp (2004) ArticleTitleThe RNAi revolution Nature 430 161–164 Occurrence Handle10.1038/430161a

    Article  Google Scholar 

  • L.E. Orgel (2004a) ArticleTitlePrebiotic chemistry and the origin of the RNA world Crit. Rev. Bioch. Mol. Biol. 39 99–123

    Google Scholar 

  • L.E. Orgel (2004b) ArticleTitlePrebiotic adenine revisited: eutectics and photochemistry Origin Life Evol Biosphere 34 361–369 Occurrence Handle10.1023/B:ORIG.0000029882.52156.c2

    Article  Google Scholar 

  • L.E. Orgel (1998) ArticleTitleThe origin of life – a review of facts and speculations TIBS 23 491–495

    Google Scholar 

  • I. Oparin (1957) The Origin of Life on Earth Oliver and Boyd Edinburgh

    Google Scholar 

  • D. Penny M.J. Phillips (2004) ArticleTitleThe rise of birds and mammals: are microevolutionary processes sufficient for macroevolution? Trends Ecol. Evol. 19 516–522

    Google Scholar 

  • J.A. Piccirilli T. Krauch S.E. Moroney S.A. Benner (1990) ArticleTitleEnzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet Nature 343 33–37 Occurrence Handle10.1038/343033a0

    Article  Google Scholar 

  • A.M. Poole D.C. Jeffares D. Penny (1999) ArticleTitleProkaryotes, the new kids on the block BioEssays 21 880–889 Occurrence Handle10.1002/(SICI)1521-1878(199910)21:10<880::AID-BIES11>3.0.CO;2-P

    Article  Google Scholar 

  • A.M. Poole D.C. Jeffares D. Penny (1998) ArticleTitleThe path from the RNA world J. Mol. Evol. 46 1–17

    Google Scholar 

  • A.M. Poole D. Penny B.-M. Sjöberg (2001) ArticleTitleConfounded Cytosine! Tinkering and the evolution of DNA Nat. Rev. Mol. Cell Biol. 2 147–151 Occurrence Handle10.1038/35052091

    Article  Google Scholar 

  • C.E. Raven (1986) John Ray: Naturalist Cambridge University Press Cambridge

    Google Scholar 

  • J. Reader G. Joyce (2002) ArticleTitleA ribozyme composed of only two different nucleotides Nature 420 841–844 Occurrence Handle10.1038/nature01185

    Article  Google Scholar 

  • D.C. Reanney (1982) ArticleTitleThe evolution of RNA viruses Annu. Rev. Microbiol. 36 47–73 Occurrence Handle10.1146/annurev.mi.36.100182.000403

    Article  Google Scholar 

  • Rebek J. 1994. Synthetic self-replicating molecules. Sci. Am. July 34–40.

  • A.I. Skoultchi H.J. Morowitz (1964) ArticleTitleInformation storage and survival of biological systems at temperatures near absolute zero Yale J. Biol. Med. 37 158–163

    Google Scholar 

  • E. Smith H.J. Morowitz (2004) ArticleTitleUniversality in intermediary metabolism Proc. Natl. Acad. Sci. U.S.A. 101 13168–13173

    Google Scholar 

  • S.J. Sowerby G.B. Petersen (2002) ArticleTitleLife before RNA Astrobiology 2 231–239 Occurrence Handle10.1089/153110702762027826

    Article  Google Scholar 

  • T.A. Steitz P.B. Moore (2003) ArticleTitleRNAthe first macromolecular catalyst: the ribosome is a ribozyme Trends Biochem. Sci. 28 411–418 Occurrence Handle10.1016/S0968-0004(03)00169-5

    Article  Google Scholar 

  • J.D. Sutherland J.N. Whitfield (1997) ArticleTitlePrebiotic chemistry: a bioorganic perspective Tetrahedron 53 11493–11527

    Google Scholar 

  • E. Szathmáry (2003) ArticleTitleWhy are there four letters in the genetic alphabet? Nat. Rev. Genet. 4 995–1001

    Google Scholar 

  • K. Tamura P. Schimmel (2004) ArticleTitleChiral-selective aminoacylation of an RNA minihelix Science 305 1253 Occurrence Handle10.1126/science.1099141

    Article  Google Scholar 

  • J.T. Trevors (2003) ArticleTitlePossible origin of a membrane in the subsurface of the Earth Cell Biol. Intern. 27 451–457

    Google Scholar 

  • H. Trinks W. Schröder C.K. Biebricher (2003) Eis und die Ensthehung des Lebens. (Ice and the origin of life) Shaker Verlag Aachen

    Google Scholar 

  • G. Wächtershauser (1992) ArticleTitleGroundworks for an evolutionary biochemistry – the iron sulfur world Prog. Biophys. Mol. Biol. 58 85–202

    Google Scholar 

  • W.C. Winkler A. Nahvi A. Roth J.A. Collins R.R. Breaker (2004) ArticleTitleControl of gene expression by a natural metabolite-responsive ribozyme Nature 428 281–286 Occurrence Handle10.1038/nature02362

    Article  Google Scholar 

  • C.R. Woese (2002) ArticleTitleOn the evolution of cells Proc. Natl Acad. Sci. USA 99 8742–8747 Occurrence Handle10.1073/pnas.132266999

    Article  Google Scholar 

  • W. Zintzaras M. Santos E. Szathmary (2002) ArticleTitle‘Living’ under the challenge of information decay: the stochastic corrector model vs hypercycles J. Theor. Biol. 217 167–181 Occurrence Handle10.1006/jtbi.2002.3026

    Article  Google Scholar 

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Penny, D. An Interpretive Review of the Origin of Life Research. Biol Philos 20, 633–671 (2005). https://doi.org/10.1007/s10539-004-7342-6

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