Skip to main content
Log in

Fungal biodiversity in aquatic habitats

  • Original Paper
  • Published:
Biodiversity and Conservation Aims and scope Submit manuscript

Abstract

Fungal biodiversity in freshwater, brackish and marine habitats was estimated based on reports in the literature. The taxonomic groups treated were those with species commonly found on submerged substrates in aquatic habitats: Ascomycetes (exclusive of yeasts), Basidiomycetes, Chytridiomycetes, and the non-fungal Saprolegniales in the Class Oomycetes. Based on presence/absence data for a large number and variety of aquatic habitats, about 3,000 fungal species and 138 saprolegnialean species have been reported from aquatic habitats. The greatest number of taxa comprise the Ascomycetes, including mitosporic taxa, and Chytridiomycetes. Taxa of Basidiomycetes are, for the most part, excluded from aquatic habitats. The greatest biodiversity for all groups occurs in temperate areas, followed by Asian tropical areas. This pattern may be an artifact of the location of most of the sampling effort. The least sampled geographic areas include Africa, Australia, China, South America and boreal and tropical regions worldwide. Some species overlap occurs among terrestrial and freshwater taxa but little species overlap occurs among freshwater and marine taxa. We predict that many species remain to be discovered in aquatic habitats given the few taxonomic specialists studying these fungi, the few substrate types studied intensively, and the vast geographical area not yet sampled.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Alias SA, Jones EBG (2000) Colonization of mangrove wood by marine fungi at Kuala Selangor mangrove stand, Malaysia. Fungal Diversity 5:9–21

    Google Scholar 

  • Bandoni RJ (1974) Mycological observations on the aqueous films covering decaying leaves and other litter. Trans Japn Mycol Soc 15:309–315

    Google Scholar 

  • Barghoorn ES, Linder DH (1944) Marine fungi: their taxonomy and biology. Farlowia 1:395–467

    Google Scholar 

  • Barr DJS (1980) An outline for the reclassification of the Chytridiales, and for a new order, Spizellomycetales. Can J Bot 58:2380–2394

    Google Scholar 

  • Barr DJS (2001) Chytridiomycota. In: McLaughlin D, McLaughlin E, Lemke P (eds) The Mycota VII (Part A). Springer-Verlag, Berlin

    Google Scholar 

  • Barr ME (1987) Prodromus to Class Loculoascomycetes. Amherst, Massachusetts

    Google Scholar 

  • Barr ME (1990) Prodromus to non-lichenized, pyrenomycetous members of Class Hymenoascomycetes. Mycotaxon 39:43–184

    Google Scholar 

  • Berger L, Speare R, Hyatt A (1999) Chytrid fungi and amphibian declines: overview, implications, and future directions. In: Campbell A (ed) Declines and disappearances of Australian frogs. Environmental Australia, Canberra, pp 21–31

    Google Scholar 

  • Beverwijk AL van (1951) Zalewski’s Clathrosphaera spirifera. Trans Br Mycol Soc 34:280–290

    Article  Google Scholar 

  • Boyd PE, Kohlmeyer J (1982) The influence of temperature on the seasonal and geographic distribution of three marine fungi. Mycologia 74:894–902

    Article  Google Scholar 

  • Cai L, Zhang KQ, Hyde KD (2003) Freshwater ascomycetes. In: Tsui CKM, Hyde KD (eds) Freshwater mycology. Fungal Diversity Press, Hong Kong, pp 275–324

    Google Scholar 

  • Campbell J, Shearer CA (2003) Systematics of Halosarpheia based on morphological and molecular data. Mycologia 95:532–553

    Google Scholar 

  • Descals E, Webster J (1984) Branched aquatic conidia in Erynia and Entomophthora—sensu-lato. Trans Br Mycol Soc 83:669–682

    Article  Google Scholar 

  • De Wildeman É (1893) Notes mycologiques. Fasc II. Annales of the Societe Belge Microscopie 17:35–68

    Google Scholar 

  • De Wildeman É (1894) Notes mycologiques. Fasc III. Annales of the Societe Belge Microscopie 18:135–161

    Google Scholar 

  • De Wildeman É (1895) Notes mycologiques. Fasc II. Annales of the Societe Belge Microscopie 19:193–206

    Google Scholar 

  • Dudka IA (1974) Aquatic hyphomycetes of the Ukraine (in Ukrainian). Naukova Dumka, Kiev, 240 pp

  • Dudka IA (1985a) Ascomycetes, components of freshwater biocoenosis. Ukrainskyi Botanichnyi Zhurnal 42:86–95

    Google Scholar 

  • Dudka IO (1985b) Aquatic fungi Imperfecti of the U.S.S.R (in Russian). Naukova Dumka, Kiev, 186 pp

  • Eriksson O (2004) Myconet: outline of the Ascomycetes. < http:://www.umu.se/myconet/curr/current.html > 

  • Field JI, Webster J (1983) Anaerobic survival of aquatic fungi. Trans Br Mycol Soc 81:365–369

    Article  Google Scholar 

  • Field JI, Webster J (1985) Effects of sulfide on survival of aero-aquatic and aquatic hyphomycetes from stagnant water. Trans Br Mycol Soc 85:193–199

    Article  CAS  Google Scholar 

  • Geiser DM, Taylor JW, Ritchie KB, Smith GW (1998) Cause of sea fan death in the West Indies. Nature 394:136–137

    Article  Google Scholar 

  • Goh TK, Hyde KD (1996) Biodiversity of freshwater fungi. J Ind Microbiol 17:328–345

    Article  CAS  Google Scholar 

  • Goh TK, Tsui KM, Hyde KD (1997) Yinmingella mitriformis gen. et. sp. nov., a new sporodochial hyphomycete from submerged wood in Hong Kong. Can J Bot 76:1693–1697

    Article  Google Scholar 

  • Goh TK, Hyde KD (1998) A new hyphomycete genus Conioscyphopsis from wood submerged in a freshwater stream and a review of Conioscypha. Mycol Res 102:308–312

    Article  Google Scholar 

  • Goh TK, Hyde KD, Ho WH (1998a) Aquaphila albicans gen. et. sp. nov., a hyphomycete from submerged wood in the tropics. Mycol Res 102:587–592

    Article  Google Scholar 

  • Goh TK, Tsui KM, Hyde KD (1998b) Elegantimyces sporidesmiopsis gen. et. sp. nov. on submerged wood from Hong Kong. Mycol Res 102:239–242

    Article  Google Scholar 

  • Goh TK, Hyde KD (1999) Fungi on submerged wood and bamboo in the Plover Cove Reservoir, Hong Kong. Fungal Diversity 3:57–85

    Google Scholar 

  • Goh TK, Tusi CKM (2003) Key to common dematiaceous hyphomycetes from freshwater. In: Tsui CKM, Hyde KD (eds) Freshwater mycology. Fungal Diversity Press, Hong Kong, pp 325–343

    Google Scholar 

  • Hawksworth DL, Kirk PM, Sutton BC, Pegler DN (1995) Ainsworth and Bisby’s dictionary of the fungi, 8th ed. CAB International, Oxon, UK

    Google Scholar 

  • Ho YW, Barr DJS (1995) Classification of anaerobic gut fungi from herbivores with emphasis on rumen fungi from Malaysia. Mycologia 87:655–677

    Article  Google Scholar 

  • Hughes GC (1974) Geographical distribution of the higher marine fungi. Veroeffentilichungen des Instituts fuer Meeresforschung Bremerhaven Suppl 5:419–441

    Google Scholar 

  • Hyde KD (1988) Observations on the vertical distribution of marine fungi on Rhizophora spp. at Kampong Danau mangrove Brunei. Asian Mar Biol 5:77–81

    Google Scholar 

  • Hyde KD (1990a) A study of vertical zonation of intertidal fungi on Rhizophora apiculata at Kampong Kapok mangrove, Brunei. Aquat Bot 36:255–262

    Article  Google Scholar 

  • Hyde KD (1990b) A comparison of the intertidal mycota of five mangrove tree species. Asian Mar Biol 7:93–107

    Google Scholar 

  • Hyde KD, Seifert KA (1992) Tropical Australian freshwater fungi. III. Candelosynnema ranunculosporum, a new genus and species of synnematous hyphomycetes. Aust Syst Bot 5:401–405

    Google Scholar 

  • Hyde KD (1993) Tropical Australian freshwater fungi. VI. Tiarosporella paludosa and Clohesyomyces aquaticus gen. et sp. nov. (Coelomycetes). Aust Syst Bot 6:169–173

    Article  Google Scholar 

  • Hyde KD, Goh TK (1997) Fungi on submerged wood in a small stream on Mt Lewis, North Queensland, Australia. Muelleria 10:145–157

    Google Scholar 

  • Hyde KD, Goh TK (1998a) Fungi on submerged wood in Lake Barrine, North Queensland, Australia. Mycol Res 102:739–749

    Article  Google Scholar 

  • Hyde KD, Goh TK (1998b) Fungi on submerged wood in the Riviere St Marie-Louis, The Seychelles. S Afr J Bot 64:330–336

    Google Scholar 

  • Hyde KD, Goh TK, Steinke TD (1998) Fungi on submerged wood in the Palmiet River, Durban, South Africa. S Afr J Bot 64:151–162

    Google Scholar 

  • Hyde KD, Goh TK (1999) Fungi on submerged wood from the River Coln, England. Mycol Res 103:1561–1574

    Article  Google Scholar 

  • Hyde KD, Pointing SB (eds) (2000) Marine mycology. A practical approach. Fungal Diversity Press, Hong Kong

    Google Scholar 

  • Hyde KD, Wong SW, Jones EBG (1997) Freshwater Ascomycetes. In: Hyde KD (ed) Biodiversity of tropical microfungi. Hong Kong University Press

  • Inderbitzin P, Landvik S, Abdel-Wahab MA, Berbee ML (2001) Aliquandostipitaceae, a new family for two new tropical ascomycetes with unusually wide hyphae and dimorphic ascomata. Am J Bot 88:52–61

    Article  PubMed  Google Scholar 

  • Ingold CT (1942) Aquatic hyphomycetes of decaying alder leaves. Trans Br Mycol Soc 25:339–417

    Article  Google Scholar 

  • Ingold CT (1951) Aquatic ascomycetes: Ceriospora caudae suis n. sp. and Ophiobolus typhae. Trans Br Mycol Soc 34:210–215

    Article  Google Scholar 

  • Ingold CT (1954) Aquatic ascomycetes: discomycetes from lakes. Trans Br Mycol Soc 37:1–18

    Article  Google Scholar 

  • Ingold CT (1955) Aquatic ascomycetes: further species from the English Lake District. Trans Br Mycol Soc 38:157–168

    Article  Google Scholar 

  • Ingold CT (1975) An illustrated guide to aquatic and waterborne hyphomycetes (Fungi Imperfecti). Freshwater Biological Association Scientific Publication 30:1–96

    Google Scholar 

  • Ingold CT, Chapman B (1952) Aquatic ascomycetes: Loramyces juncicola Weston and L macrospora nsp Trans Br Mycol Soc 35:268–272

    Article  Google Scholar 

  • James TY, Porter D, Leander CA, Vilgalys R, Longcore J (2000) Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Can J Bot 78:336–350

    Article  CAS  Google Scholar 

  • Jones EBG, Alias SA (1997) Biodiversity of mangrove fungi. In: Hyde KD (ed) Biodiversity of tropical microfungi. Hong Kong University Press, Hong Kong, pp 71–92

    Google Scholar 

  • Johnson TW, Sparrow FK (1961) Fungi in oceans and estuaries. J. Cramer, Weinheim

  • Kane DF, Tam WY, Jones EBG (2002) Fungi colonising and sporulating on submerged wood in River Servern, UK. Fungal Diversity 10:45–55

    Google Scholar 

  • Karling JS (1964) Synchytrium. Academic Press, New York

    Google Scholar 

  • Karling JS (1977) Chytridiomycetarium Iconographia. J Cramer

  • Kaushik NK, Hynes HBN (1971) The fate of the dead leaves that fall into streams. Archiv Fur Hydrobiologie 68:465–515

    Google Scholar 

  • Kohlmeyer J (1983) Geography of marine fungi. Aust J Bot Suppl Ser 10:67–76

    Google Scholar 

  • Kohlmeyer J (1984) Tropical marine fungi. PSZNI Mar Ecol 5:329–378

    Article  Google Scholar 

  • Kohlmeyer J, Kohlmeyer E (1979) Marine mycology. The higher fungi. Academic Press, New York

    Google Scholar 

  • Kohlmeyer J, Volkmann-Kohlmeyer B (1991) Illustrated key to the filamentous higher marine fungi. Bot Mar 34:1–61

    Article  Google Scholar 

  • Kohlmeyer J, Volkmann-Kohlmeyer B (2001) Biodiversity of fungi on Juncus roemerianus. Mycol Res 105:1411–1412

    Article  Google Scholar 

  • Kuthubutheen AJ, Nawawi A (1994) Paracryptophiale kamaruddinii gen. et. sp. nov. from submerged litter in Malaysia. Mycol Res 98:125–126

    Article  Google Scholar 

  • Leong WF, Tan TK, Jones EBG (1991) Fungal colonization of submerged Bruguiera cylindrica and Rhizophora apiculata wood. Bot Mar 34:69–76

    Article  Google Scholar 

  • Li JL, Heath IB (1993) Chytridiomycetous gut fungi, oft overlooked contributors to herbivore digestion. Can J Microbiol 39:1003–1013

    Article  PubMed  CAS  Google Scholar 

  • Linder DH (1929) A monograph of the helicosporous fungi imperfecti. Ann Missouri Botanical Garden 16:227–389

    Article  Google Scholar 

  • Lintott WH, Lintott EA (1982) Lignicolous marine fungi from New Zealand. Mari Ora 10:73–76

    Google Scholar 

  • Longcore J (1996) Chytridiomycete Taxonomy since (1960). Mycotaxon 60:149–174

    Google Scholar 

  • Longcore J, Pessier A, Nichols D (1999) Batrachochtyrium dendrobatidis gen et. sp. nov., a chytrid pathogenic to amphibians. Mycologia 91:219–227

    Article  Google Scholar 

  • Marvanová L (1997) Freshwater hyphomycetes: a survey with remarks on tropical taxa. In: Janardhanan KK, Rajendran C, Natarajan K, Hawksworth DL (eds) Tropical mycology. Science Publishers, Inc., U.S.A, pp 169–226

    Google Scholar 

  • Nawawi A, Kuthubutheen AJ (1988) Camposporidium, a new phragmoconidial genus of hyphomycetes. Mycotaxon 32:161–167

    Google Scholar 

  • Nawawi A, Kuthubutheen AJ (1989) Canalisporium, a new genus of lignicolous hyphomycetes from Malaysia. Mycotaxon 34:475–487

    Google Scholar 

  • Nawawi A, Kuthubutheen AJ (1990) Nidulispora gen. nov., a hyphomycete genus with crateriform conidia. Mycotaxon 36:329–336

    Google Scholar 

  • Nawawi A, Kuthubutheen AJ (1992) Jerainum triquetrum gen. et sp. nov., a new hyphomycete with muriform and appendaged conidia. Mycotaxon 45:409–415

    Google Scholar 

  • Nakagiri A (2000) Ecology and biodiversity of Halophytophthora species. Fungal Diversity 5:153–164

    Google Scholar 

  • Nilsson S (1964) Freshwater hyphomycetes: taxonomy, morphology and ecology. Symbolae Botanica Upsalienses 18:1–130

    Google Scholar 

  • Park D (1972) On the ecology of heterotrophic microorganisms in fresh water. Trans Br Mycol Soc 58:291–299

    Article  Google Scholar 

  • Perty M (1852) Zur Kenntniss kleinster Lebensformen. Bern

  • Pounds JA, Fogden LA, Michael PL, Foster PN, La Marca E, Masters KL, Merino-Viteri A, Puschendorf R, Ron SR, Sanchez-Azofeifa GA, Still CJ, Young BE (2006) Widespread amphibian extinctions from epidemic disease driven by global warming. Nature 439:161–167

    Article  PubMed  CAS  Google Scholar 

  • Raja HA, Campbell J, Shearer CA (2004) Additional reports of freshwater lignicolous meiosporic and mitosporic euascomycetes from the Great Smoky Mountains National Park. Annual meeting of the Mycological Society of America, Asheville, North Carolina. Inoculum 55:32. Abstract

    Google Scholar 

  • Raja HA, Ferrer A, Shearer CA (2005) Aliquandostipite crystallinus, a new ascomycete species from submerged wood in freshwater habitats. Mycotaxon 91:207–215

    Google Scholar 

  • Reinsch PF (1867) Die Algenflora der mittleren Theiles von Franken. Abh Naturforschender Gesellschaft Nürnberg 1866:1–238

    Google Scholar 

  • Reinsch PF (1888) Familiae Polyedriarum Monographia. Notarisia 3:493–516

    Google Scholar 

  • Rosenzweig ML (1995) Species diversity in space and time. Cambridge University Press, New York, NY

    Google Scholar 

  • Ruiz RFC, Guarro J, Mayayo E (1998) Enridescalsia, a new genus of conidial fungi from submerged leaves in Cuba. Mycol Res 102:42–44

    Article  Google Scholar 

  • Sarma VV, Hyde KD (2001) A review on frequently occurring fungi in mangroves. Fungal Diversity 8:1–34

    Google Scholar 

  • Schmit JP, Shearer CA (2003) A checklist of mangrove associated fungi, their geographical distribution and known host plants. Mycotaxon 85:423–477

    Google Scholar 

  • Shearer CA (1972) Fungi of the Chesapeake Bay and its tributaries III The distribution of wood-inhabiting ascomycetes and fungi imperfecti of the Patuxent River. Am J Bot 59:961–969

    Article  Google Scholar 

  • Shearer CA, Crane JL (1986) Illinois fungi XI fungi and myxomycetes from wood and leaves submerged in southern Illinois swamps. Mycotaxon 25:527–538

    Google Scholar 

  • Shearer CA (1993) The freshwater ascomycetes. Nova Hedwigia 56:1–33

    Google Scholar 

  • Shearer CA (2001) The distribution of freshwater filamentous ascomycetes. In: Misra JK, Horn BW (eds) Trichomycetes and other fungal groups: Robert W Lichtwardt Commemoration. Science Publishers, Inc., Enfield, New Hampshire, USA, pp 225–292

    Google Scholar 

  • Shearer CA (2002) Freshwater Ascomycetes Database. http://www.fm5web.life.uiuc.edu:23523/ascomycete/

  • Shearer CA, Langsam DM, Longcore JE (2004) Fungi in freshwater habitats. In: Mueller GM, Bills GF, Foster MS (eds) Biodiversity of fungi: inventory and monitoring methods. Elsevier Academic Press, San Diego, CA, pp 513–532

    Chapter  Google Scholar 

  • Sivichai S, Hywel-Jones NL, Somrithhipol S (2000) Lignicolous freshwater Ascomycota from Thailand: Melanochaeta and Sporoschisma anamorphs. Mycol Res 103:729–735

    Google Scholar 

  • Sivichai S, Jones EBG, Hywel-Jones NL (2002) Fungal colonisation of wood in a freshwater stream at Tad Ta Phu Khao Yai National Park, Thailand. Fungal Diversity 10:113–129

    Google Scholar 

  • Sivichai S, Jones EBG (2003) Teleomorphic–namorphic connections of freshwater fungi. In: Tsui CKM, Hyde KD (eds) Freshwater mycology. Fungal Diversity Press, Hong Kong, pp 259–274

    Google Scholar 

  • Sparrow FK Jr (1960) Aquatic phycomycetes. University of Michigan Press, Ann Arbor

    Google Scholar 

  • Stevens FL (1920) New or noteworthy Puerto Rican fungi. Bot Gazette 70:399–402

    Article  Google Scholar 

  • Trinci AP, Davies AR, Gull K, Lawrence MI, Nielson BB, Rickers A, Theodorou MK (1994) Anaerobic fungi in herbivorous animals. Mycol Res 98:129–152

    Article  Google Scholar 

  • Tsui CKM, Hyde KD, Hodgkiss IJ (2000) Biodiversity of fungi on submerged wood in Hong Kong streams. Aquat Microb Ecol 21:289–298

    Article  Google Scholar 

  • Tsui CKM, Hyde KD (2003) Freshwater mycology. Fungal Diversity Press, Hong Kong, 350 pp

    Google Scholar 

  • Volkmann-Kohlmeyer B, Kohlmeyer J (1993) Biogeographic observations on Pacific marine fungi. Mycologia 85:337–346

    Article  Google Scholar 

  • Wang CJK (2001) Lignicolous hyphomycetes of New York: a preliminary report. Harvard Papers Bot 6:215–222

    Google Scholar 

  • Webster J (1959) Experiments with spores of aquatic hyphomycetes. I. Sedimentation and impaction on smooth surfaces. Ann Bot NS 23:595–611

    Google Scholar 

  • Webster J, Descals E (1981) Morphology, distribution and ecology of conidial fungi in freshwater habitats. In: Cole GT, Kendrick B (eds) The biology of conidial fungi, vol. 1. Academic Press, NY, pp 295–355

    Google Scholar 

Download references

Acknowledgments

The following individuals are acknowledged for their respective contributions to this paper: H. A. Thornton and D. Porter (Chytridiomycota, Chytridiomycetes); C.A. Shearer (Freshwater Meiotic Ascomycetes); E. Descals and L. Marvanová (Aquatic Hyphomycetes); H. Voglmayr (Freshwater Aeroaquatic Mitosporic Fungi); H. A. Raja (Miscellaneous Freshwater Mitosporic Ascomycetes); J.P. Schmit (Mangrove Fungi); J. Kohlmeyer and B. Volkman-Kohlmeyer (Marine Meiosporic and Mitosporic Ascomycetes); and D. Padgett (Oomycetes, Saprolegniales).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Carol A. Shearer.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Shearer, C.A., Descals, E., Kohlmeyer, B. et al. Fungal biodiversity in aquatic habitats. Biodivers Conserv 16, 49–67 (2007). https://doi.org/10.1007/s10531-006-9120-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10531-006-9120-z

Keywords

Navigation