Abstract
Glycerol dehydratase (GDHt) is a key and rate-limiting enzyme in the pathway of 1,3-propanediol (1,3-PD) synthesis. The improvement of GDHt’s stability and enzymatic activity is desirable for the biosynthesis of 1,3-PD. The gldABC gene encoding GDHt of Klebsiella pneumoniae was cloned and expressed in Escherichia coli XL10-Gold, and the mutation sites of GDHt were obtained through prediction by PoPMuSiC program. Consequently, two mutants (KpG60 and KpG525) were developed by rational design through site-mutagenesis based on 3D structure which was constructed from homology modeling. Analyses of enzymatic properties showed that pH stability of the mutants was about 1.25–2 times higher than that of the wild type, and specific activity, Vmax and Kcat/Km of KpG525 were about 1.5–2 times higher than those of the wild type. This work presented a simple and useful measure to improve the performance of industrial enzyme.
Similar content being viewed by others
References
Anand P, Saxena RK, Marwah RG (2011) A novel downstream process for 1,3-propanediol from glycerol-based fermentation. Appl Microbiol Biotechnol 90(4):1267–1276
Barbirato F, Larguier A, Conte T, Astruc S, Bories A (1210) Sensitivity to pH, product inhibition, inhibition by NAD+ of 1,3-propanediol dehydrogenase purified from Enterobacter agglomerans CNCM. Arch Microbiol 168(2):160–163
Fan HY, Morgan SA, Brechun KE, Chen YY, Jaikaran AS, Woolley GA (2011) Improving a designed photocontrolled DNA-binding protein. Biochemistry 50(7):1226–1237
Gilis D, Rooman M (2000) PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins. Protein Eng 13(12):849–856
Jin P, Li S, Lu SG, Zhu JG, Huang H (2011) Improved 1,3-propanediol production with hemicellulosic hydrolysates (corn straw) as cosubstrate: impact of degradation products on Klebsiella pneumoniae growth and 1,3-propanediol fermentation. Bioresour Technol 102(2):1815–1821
Kwasigroch JM, Gilis D, Dehouck Y, Rooman M (2002) PoPMuSiC, rationally designing point mutations in protein structures. Bioinformatics 18(12):1701–1702
Liang Q, Zhang H, Li S, Qi Q (2010) A novel downstream process for 1,3-propanediol to 1,3-propanediol in Escherichia coli. Appl Microbiol Biotechnol 89(1):57–62
Liu H, Xu Y, Zheng Z, Liu D (2011) 1,3-Propanediol and its copolymers: research, development and industrialization. Biotechnol J 5(11):1137–1148
Macis L, Daniel R, Gottschalk G (1998) Properties and sequence of the coenzyme B12-dependent glycerol dehydratase of Clostridium pasteurianum. FEMS Microbiol Lett 164:21–28
Malaoui H, Marczak R (2001) Separation and characterization of the 1,3-propanediol and glycerol dehydrogenase activities from Clostridium butyricum E5 wild-type and mutant D. J Appl Microbiol 90(6):1006–1014
Minagawa H, Shimada J, Kaneko H (2003) Effect of mutations at Glu160 and Val198 on the thermostability of lactate oxidase. Eur J Biochem 270(17):3628–3633
Qi X, Sun L, Luo Z, Wu J, Meng X, Tang Y, Wei Y, Huang R (2006) Rational design of glycerol dehydratase: swapping the genes encoding the subunits of glycerol dehydratase to improve enzymatic properties. Chin Sci Bull 51(24):2977–2985
Qi X, Chen Y, Jiang K, Zuo W, Luo Z, Wei Y, Du L, Wei H, Huang R, Du Q (2009) Saturation-mutagenesis in two positions distant from active site of a Klebsiella pneumoniae glycerol dehydratase identifies some highly active mutants. J Biotechnol 144(1):43–50
Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31(13):3381–3385
Seyfried M, Daniel R, Gottschalk G (1996) Cloning, sequencing, and overexpression of the genes encoding coenzyme B12-dependent glycerol dehydratase of Citrobacter freundii. J Bacteriol 178(19):5793–5796
Tobimatsu T, Azuma M, Matsubara H, Takatori H, Niida T, Nishimoto K, Satoh H, Hayashi R, Toraya T (1996) Cloning, sequencing, and high level expression of the genes encoding adenosylcobalamin-dependent glycerol dehydrase of Klebsiella pneumoniae. J Biol Chem 271(37):22352–22357
Yamanishi M, Yunoki M, Tobimatsu T, Sato H, Matsui J, Dokiya A, Iuchi Y, Oe K, Suto K, Shibata N, Morimoto Y, Yasuoka N, Toraya T (2002) The crystal structure of coenzyme B12-dependent glycerol dehydratase in complex with cobalamin and propane-1,2-diol. Eur J Biochem 269(18):4484–4494
Yang G, Tian J, Li J (2006) Fermentation of 1,3-propanediol by a lactate deficient mutant of Klebsiella oxytoca under microaerobic conditions. Appl Microbiol Biotechnol 73(5):1017–1024
Yuanyuan Z, Yang C, Baishan F (2004) Cloning and sequence analysis of the dhaT gene of the 1,3-propanediol regulon from Klebsiella pneumoniae. Biotechnol Lett 26(3):251–255
Zhang SB, Wu ZL (2011) Identification of amino acid residues responsible for increased thermostability of feruloyl esterase A from Aspergillus niger using the PoPMuSiC algorithm. Bioresour Technol 102(2):2093–2096
Zheng ZM, Xu YZ, Wang TP, Dong CQ, Yang YP, Liu DH (2010) Ammonium and phosphate limitation in 1,3-propanediol production by Klebsiella pneumoniae. Biotechnol Lett 32(2):289–294
Acknowledgments
We thank Prof. Yong Wang of Jiangsu University for his revision to the manuscript. This work was supported by the National Natural Science Foundation of China under Grant No. 21006041, the Postdoctoral Foundation of Jiangsu Province under Grant No. 0901012B and the Scientific Research Promotion Fund for the Talents of Jiangsu University under Grant No. 08JDG009.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Qi, X., Guo, Q., Wei, Y. et al. Enhancement of pH stability and activity of glycerol dehydratase from Klebsiella pneumoniae by rational design. Biotechnol Lett 34, 339–346 (2012). https://doi.org/10.1007/s10529-011-0775-5
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10529-011-0775-5