Abstract
Current DNA extraction protocols for genomic DNA from Botrytis cinerea almost always start with mycelium that has been reduced to powder with liquid N2 in a mortar, and this makes their application to a large number of samples slow and cumbersome. Here we present an adaptation of an existing method [Möller et al. (1992) Nucleic Acids Res 20: 6115–6116] for which the initial steps have been modified, including the homogenization of the fungus with sand and the aid of a common household drill. This method allows the processing of large number of samples in much shorter times and generates an average of 4 μg DNA per sample, of sufficient quality for use in PCR and Southern blotting.
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References
Benito EP, ten Have A, van’t Klooster JW, Van Kan JAL (1998) Fungal and plant gene expression during synchronized infection of tomato leaves by Botrytis cinerea. Eur J Plant Pathol 104:207–220
Borman AM, Linton CJ, Miles SJ, Campbell CK, Johnson EM (2006) Ultra-rapid preparation of total genomic DNA from isolates of yeast and mould using Whatman FTA filter paper technology - a reusable DNA archiving system. Med Mycol 44:389–398
De Maeseneire SL, Van Boegaert I, Dauvrin T, Soetaert WK, Vandamme EJ (2007) Rapid isolation of fungal genomic DNA suitable for long distance PCR. Biotechnol Lett 29: 1845–1855.
Melo SC, Pungartnik C, Cascardo JC, Brendel M (2006) Rapid and efficient protocol for DNA extraction and molecular identification of the basidiomycete Crinipellis perniciosa. Genet Mol Res 5:851–855
Möller EM, Bahnweg G, Sandermann H, Geiger HH (1992) A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues. Nucleic Acids Res 20:6115–6116
Noda J, Brito N, Espino JJ, Gonzalez C (2007) Methodological improvements in the expression of foreign genes and in gene replacement in the phytopathogenic fungus Botrytis cinerea. Mol Plant Pathol 8:811–816
Sambrook J, Russell DW (2001) Molecular Cloning. A laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
Suzuki S, Taketani H, Kusumoto K, Kashiwagi Y (2006) High-throughput genotyping of filamentous fungus Aspergillus oryzae based on colony direct polymerase chain reaction. J Biosci Bioeng 102:572–574
Tendulkar SR, Gupta A, Chattoo BB (2003) A simple protocol for isolation of fungal DNA. Biotechnol Lett 25:1941–1944
Zhou X, Li Q, Zhao J, Tang K, Lin J, Yin Y (2007) Comparison of rapid DNA extraction methods applied to PCR identification of medicinal mushroom Ganoderma spp. Prep Biochem Biotechnol 37:369–380
Acknowledgements
Support for this research was provided by grants from the Ministerio de Educación y Ciencia (AGL2006-09300) and Gobierno de Canarias (PI042005/098). J.J.E. was supported by CajaCanarias and Gobierno de Canarias. J.N. was supported by Gobierno de Canarias.
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González, C., Noda, J., Espino, J.J. et al. Drill-assisted genomic DNA extraction from Botrytis cinerea . Biotechnol Lett 30, 1989–1992 (2008). https://doi.org/10.1007/s10529-008-9790-6
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DOI: https://doi.org/10.1007/s10529-008-9790-6