Abstract
In the full sequences of the mtDNA cytochrome b gene, 26 haplotypes (Tamias sibiricus barberi) from six localities of central and southern Korea were distinct from 21 haplotypes (Tamias sibiricus orientalis) from five localities of northeast China and Vladivostok, Russia. The average Tamura–Nei nucleotide distance between the subspecies (11.40%) and maximum infrasubspecific distances (3.74% and 4.72%) support the subspecies classification of T. s. barberi based on morphometric comparison. The 26 haplotypes of T. s. barberi were also distinct from 2 haplotypes of T. s. orientalis and Tamias sibiricus jacutensis from far-east Russia (average distance, 11.86%). Thus T. s. barberi constitutes a “phylogroup” (average nucleotide distance > 10%); analyses with nuclear genes of northeast Asian specimens, including North Korean ones, are necessary to clarify its taxonomic status. Furthermore, 49 haplotypes of T. sibiricus from eastern Asia differed from 19 haplotypes of another 18 Tamias spp. from America (weighted-average distance, 18.58%). T. sibiricus is, therefore, distinct enough to be recognized as a subgenus, Eutamias.
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References
Avise JC, Walker D (1999) Species realities and numbers in sexual vertebrates: perspectives from an asexual transmitted genome. Proc Acad Nat Sci 96:992–995
Baker RJ, Bradley RD (2006) Speciation in mammals and the genetic species concept. J Mammal 87:643–662
Bradley RD, Baker RJ (2001) A test of the genetic species concept: cytochrome b sequences and mammals. J Mammal 82:960–973
Corbet GB (1978) The mammals of the Palaearctic region: a taxonomic review. British Mus. (Nat. Hist.)/Cornell University Press, London, pp 137–138
Ellerman JR, Morrison-Scott TCS (1951) Check-list of Palaearctic and Indian mammals 1758 to 1946. British Mus (Nat Hist), London, pp 503–504
Hillis DM, Moritz C, Mable BK (1996) Molecular Systematics, 2nd edn. Sinauer Associates, New York, p 655
Hoffmann RS, Anderson CG, Thorington RW, Heaney LR (1993) Family Sciuridae. In: Wilson DE, Reeder DM (eds) Mammal species of the world: a taxonomic and geographic reference. Smithsonian Institution Press, Washington, DC, p 455
Irwin DM, Kocher TD, Wilson AC (1991) Evolution of the cytochrome b gene of mammals. J Mol Evol 32:128–144
Johns GC, Avise JC (1998) A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol Biol Evol 15:1481–1490
Johnson DH, Jones JK (1955) A new chipmunk from Korea. Proc Biol Soc Wash 68:175–176
Jones JK, Johnson DH (1965) Synopsis of the lagomorphs and rodents of Korea. Univ Kansas Publ Mus (Nat Hist) 16:357–407
Mayr E, Ashlock PD (1991) Principles of systematic zoology. McGraw-Hill, New York, p 475
Nowak RM (1999) Walker’s mammals of the world, 6th edn. Johns Hopkins University Press, London, p 1247
Patterson BD, Heaney LR (1987) Preliminary analysis of geographic variation in red-tailed chipmunks (T. ruficaudus). J Mammal 68:782–791
Piaggio AJ, Spicer GS (2001) Molecular phylogeny of the chipmunks inferred from mitochondrial cytochrome b and cytochrome oxidase II gene sequences. Mol Phylogenet Evol 20:335–350
Sunnucks P (2000) Efficient genetic markers for population biology. Trends Ecol Evol 15:199–203
Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526
Tate GHH (1947) Mammals of eastern Asia. Macmillan, New York, p 235
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Koh, H.S., Wang, J., Lee, B.K. et al. A Phylogroup of the Siberian Chipmunk from Korea (Tamias sibiricus barberi) Revealed from the Mitochondrial DNA Cytochrome b Gene. Biochem Genet 47, 1–7 (2009). https://doi.org/10.1007/s10528-008-9200-8
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DOI: https://doi.org/10.1007/s10528-008-9200-8