Skip to main content
Log in

Halobacillus naozhouensis sp. nov., a moderately halophilic bacterium isolated from a sea anemone

  • Original Paper
  • Published:
Antonie van Leeuwenhoek Aims and scope Submit manuscript

Abstract

A moderately halophilic, Gram-positive, catalase- and oxidase-positive, rod-shaped, aerobic bacterium, designated strain JSM 071068T, was isolated from a sea anemone (Anthopleura xanthogrammica) collected from the Naozhou Island on the Leizhou Bay in the South China Sea. Cells were motile by means of peritrichous flagella and formed ellipsoidal endospores lying in subterminal swollen sporangia. Strain JSM 071068T was able to grow with 1–20% (w/v) total salts (optimum, 6–9%), at pH values of 6.0–10.0 (optimum, pH 7.5) and a temperature range of 10–35°C (optimum, 25°C). meso-Diaminopimelic acid was present in the cell-wall peptidoglycan. The predominant menaquinone was MK-7 and the major cellular fatty acids were anteiso-C15:0, anteiso-C17:0 and iso-C15:0. The genomic DNA G + C content was 42.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain JSM 071068T belonged to the genus Halobacillus. The 16S rRNA gene sequence similarities between strain JSM 071068T and the type strains of the recognized Halobacillus species ranged from 97.9% (with Halobacillus alkaliphilus) to 95.3% (with Halobacillus kuroshimensis). The levels of DNA–DNA relatedness between the new isolate and the type strains of H. alkaliphilus, Halobacillus campisalis, Halobacillus halophilus and Halobacillus seohaensis were 25.6, 22.1, 10.8 and 13.2%, respectively. The combination of phylogenetic analysis, DNA–DNA relatedness, phenotypic characteristics and chemotaxonomic data supported the view that strain JSM 071068T represents a new species of the genus Halobacillus, for which the name Halobacillus naozhouensis sp. nov. is proposed, with JSM 071068T (=DSM 21183T =KCTC 13234T) as the type strain.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Amoozegar MA, Malekzadeh F, Malik KA, Schumann P, Spröer C (2003) Halobacillus karajensis sp. nov., a novel moderate halophile. Int J Syst Evol Microbiol 53:1059–1063. doi:10.1099/ijs.0.02448-0

    Article  PubMed  CAS  Google Scholar 

  • An SY, Kanoh K, Kasai H, Goto K, Yokota Y (2007) Halobacillus faecis sp. nov., a spore-forming bacterium isolated from a mangrove area on Ishigaki Island, Japan. Int J Syst Evol Microbiol 57:2476–2479. doi:10.1099/ijs.0.64896-0

    Article  PubMed  CAS  Google Scholar 

  • Atlas RM (1993) Handbook of microbiological media. In: Parks LC (ed). CRC Press, Boca Raton

  • Chen YG, Cui XL, Pukall R, Li HM, Yang YL, Xu LH, Wen ML, Peng Q, Jiang CL (2007) Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China. Int J Syst Evol Microbiol 57:2327–2332. doi:10.1099/ijs.0.64783-0

    Article  PubMed  CAS  Google Scholar 

  • Chen YG, Zhang YQ, Huang K, Tang SK, Cao Y, Shi JX, Xiao HD, Cui XL, Li WJ (2009) Pigmentiphaga litoralis sp. nov., a facultatively anaerobic bacterium isolated from tidal flat sediment. Int J Syst Evol Microbiol 59:521–525. doi:10.1099/ijs.0.002949-0

    Article  PubMed  CAS  Google Scholar 

  • Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261. doi:10.1099/ijs.0.64915-0

    Article  PubMed  CAS  Google Scholar 

  • Claus D, Fahmy F, Rolf HJ, Tosunoglu N (1983) Sporosarcina halophila sp. nov., an obligate, slightly halophilic bacterium from salt marsh soils. Syst Appl Microbiol 4:496–506

    Google Scholar 

  • Cowan ST, Steel KJ (1965) Manual for the identification of medical bacteria. Cambridge University Press, London

    Google Scholar 

  • Cui XL, Mao PH, Zeng M, Li WJ, Zhang LP, Xu LH, Jiang CL (2001) Streptomonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51:357–363

    PubMed  CAS  Google Scholar 

  • Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid—deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229

    Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution Int J Org Evolution 39:783–791. doi:10.2307/2408678

    Google Scholar 

  • Felsenstein J (1997) An alternative least-squares approach to inferring phylogenies from pairwise distances. Syst Biol 46:101–111. doi:10.2307/2413638

    Article  PubMed  CAS  Google Scholar 

  • Gregersen T (1978) Rapid method for distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5:123–127. doi:10.1007/BF00498806

    Article  Google Scholar 

  • Groth I, Schumann P, Weiss N, Martin K, Rainey FA (1996) Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46:234–239

    PubMed  CAS  Google Scholar 

  • Hasegawa T, Takizawa M, Tanida S (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319–322. doi:10.2323/jgam.29.319

    Article  CAS  Google Scholar 

  • Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM (1985) Preparation of chromosomal, plasmid and phage DNA. In: Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (eds) Genetic manipulation of Streptomyces: a laboratory manual. F. Crowe and Sons, Norwich, pp 79–80

    Google Scholar 

  • Hua NP, Kanekiyo A, Fujikura K, Yasuda H, Naganuma T (2007) Halobacillus profundi sp. nov. and Halobacillus kuroshimensis sp. nov., moderately halophilic bacteria isolated from a deep-sea methane cold seep. Int J Syst Evol Microbiol 57:1243–1249. doi:10.1099/ijs.0.64817-0

    Article  PubMed  CAS  Google Scholar 

  • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120. doi:10.1007/BF01731581

    Article  PubMed  CAS  Google Scholar 

  • Kluge AG, Farris FS (1969) Quantitative phyletics and the evolution of anurans. Syst Zool 18:1–32. doi:10.2307/2412407

    Article  Google Scholar 

  • Liu WY, Zeng J, Wang L, Dou YT, Yang SS (2005) Halobacillus dabanensis sp. nov. and Halobacillus aidingensis sp. nov., isolated from salt lakes in Xinjiang, China. Int J Syst Evol Microbiol 55:1991–1996. doi:10.1099/ijs.0.63787-0

    Article  PubMed  CAS  Google Scholar 

  • Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167

    CAS  Google Scholar 

  • Nunes I, Tiago I, Pires AL, da Costa MS, Veríssimo A (2006) Paucisalibacillus globulus gen. nov., sp. nov., a Gram-positive bacterium isolated from potting soil. Int J Syst Evol Microbiol 56:1841–1845. doi:10.1099/ijs.0.64261-0

    Article  PubMed  CAS  Google Scholar 

  • Romano I, Finore L, Nicolaus G, Huertas FJ, Lama L, Nicolaus B, Poli A (2008) Halobacillus alkaliphilus sp. nov., a halophilic bacterium isolated from a salt lake in Fuente de Piedra, southern Spain. Int J Syst Evol Microbiol 58:886–890. doi:10.1099/ijs.0.65457-0

    Article  PubMed  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    PubMed  CAS  Google Scholar 

  • Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc, Newark

    Google Scholar 

  • Shida O, Takagi H, Kadowaki K, Nakamura LK, Komagata K (1997) Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47:289–298

    PubMed  CAS  Google Scholar 

  • Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607–654

    Google Scholar 

  • Soto-Ramírez N, Sánchez-Porro C, Rosas-Padilla S, Almodóvar K, Jiménez G, Machado-Rodríguez M, Zapata M, Ventosa A, Montalvo-Rodríguez R (2008) Halobacillus mangrovi sp. nov., a moderately halophilic bacterium isolated from the black mangrove Avicennia germinans. Int J Syst Evol Microbiol 58:125–130. doi:10.1099/ijs.0.65008-0

    Article  PubMed  CAS  Google Scholar 

  • Spring S, Ludwig W, Marquez MC, Ventosa A, Schleifer KH (1996) Halobacillus gen. nov., with description of Halobacillus litoralis sp. nov. and Halobacillus truperi sp. nov., and transfer of Sporosarcina halophilia to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 46:492–496

    Article  Google Scholar 

  • Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standard. Microbiol Today 33:152–155

    Google Scholar 

  • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599. doi:10.1093/molbev/msm092

    Article  PubMed  CAS  Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882. doi:10.1093/nar/25.24.4876

    Article  PubMed  CAS  Google Scholar 

  • Ventosa A, Quesada E, Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A (1982) Numerical taxonomy of moderately halophilic gram-negative rods. J Gen Microbiol 128:1959–1968

    Google Scholar 

  • Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE et al (1987) International committee on systematic bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464

    Article  Google Scholar 

  • Xiao HD, Chen YG, Liu ZX, Huang K, Li WJ, Cui XL, Zhang L, Yi LB (2009) Phylogenetic diversity of cultivable bacteria associated with a sea anemone from coast of the Naozhou Island in Zhanjiang, China. Acta Microbiol Sin 49:246–250

    CAS  Google Scholar 

  • Yoon JH, Weiss N, Lee KC, Lee IS, Kang KH, Park YH (2001) Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with l-lysine in the cell wall, reclassification of Bacillus marinus Rüger 1983 as Marinibacillus marinus gen. nov., comb. nov. Int J Syst Evol Microbiol 51:2087–2093

    PubMed  CAS  Google Scholar 

  • Yoon JH, Kang KH, Park YH (2003) Halobacillus salinus sp. nov., isolated from a salt lake on the coast of the East Sea in Korea. Int J Syst Evol Microbiol 53:687–693. doi:10.1099/ijs.0.02421-0

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Kang KH, Oh TK, Park YH (2004) Halobacillus locisalis sp. nov., a halophilic bacterium isolated from a marine solar saltern of the Yellow Sea in Korea. Extremophiles 8:23–28. doi:10.1007/s00792-003-0352-5

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Kang SJ, Lee CH, Oh HW, Oh TK (2005) Halobacillus yeomjeoni sp. nov., isolated from a marine solar saltern in Korea. Int J Syst Evol Microbiol 55:2413–2417. doi:10.1099/ijs.0.63801-0

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Kang SJ, Jung YT, Oh TK (2007) Halobacillus campisalis sp. nov., containing meso-diaminopimelic acid in the cellwall peptidoglycan, and emended description of the genus Halobacillus. Int J Syst Evol Microbiol 57:2021–2025. doi:10.1099/ijs.0.65188-0

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Kang SJ, Oh TK (2008) Halobacillus seohaensis sp. nov., isolated from a marine solar saltern in Korea. Int J Syst Evol Microbiol 58:622–627. doi:10.1099/ijs.0.65341-0

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by grants from the National Natural Science Foundation of China (NSFC) (30860013, 30860002, 30660004), Jishou University (jsdxkyzz200811), the Ministry of Science and Technology, PR China (2006BAE01A01-9, 863 Program, no. 2007AA021306), Key Projects of International Cooperation (2007DFB31620), the Yunnan Provincial Sciences and Technology Department (2005PY01-1, 2006C0006 M) and Yunnan University (2008YB005). We are grateful to Mr. Huai-Dong Xiao and Mr. Ke Huang for their excellent technical assistance.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yi-Guang Chen.

Additional information

The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain JSM 071068T is EU925615.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Chen, YG., Liu, ZX., Zhang, YQ. et al. Halobacillus naozhouensis sp. nov., a moderately halophilic bacterium isolated from a sea anemone. Antonie van Leeuwenhoek 96, 99–107 (2009). https://doi.org/10.1007/s10482-009-9340-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10482-009-9340-9

Keywords

Navigation