Abstract
Thorough investigation of Streptomyces peucetius ATCC 27952 genome revealed a sesquiterpene synthase, named spterp13, which encodes a putative protein of 732 amino acids with significant similarity to S. avermitilis MA-4680 (SAV2163, GeoA) and S. coelicolor A3(2) (SCO6073). The proteins encoded by SAV2163 and SCO6073 produce geosmin in the respective strains. However, the spterp13 gene seemed to be silent in S. peucetius. Deletion of the doxorubicin gene cluster from S. peucetius resulted in increased cell growth rate along with detectable production of geosmin. When we over expressed the spterp13 gene in S. peucetius DM07 under the control of an ermE* promoter, 2.4 ± 0.4-fold enhanced production of geosmin was observed.
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Abbreviations
- DMAPP:
-
Dimethylallyl diphosphate
- FPP:
-
Farnesyl diphosphate
- GC–MS:
-
Gas chromatography–mass spectrometry
- TLC:
-
Thin-layer chromatography
- HPLC:
-
High-performance liquid chromatography
- IPP:
-
Isopentenyl diphosphate
- LB:
-
Luria–Bertani
- ORF:
-
Open reading frame
- PCR:
-
Polymerase chain reaction
- PKS:
-
Polyketide synthase
- RT-PCR:
-
Reverse transcription polymerase chain reaction
References
Cane DE, Watt RM (2003) Expression and mechanistic analysis of a germacradienol synthase from Streptomyces coelicolor implicated in geosmin biosynthesis. Proc Natl Acad Sci USA 100:1547–1551. doi:10.1073/pnas.0337625100
Takagi H, Motohashi K, Miyamoto T, Shin-ya K, Furihata K, Seto H (2005) Studies on terpenoids produced by actinomycetes. Isolation and structural elucidation of antioxidative agents, naphterpins B and C. J Antibiot 58:275–278. doi:10.1038/ja.2005.33
Dürr C, Schnell HJ, Luzhetskyy A, Murillo R, Weber M, Welzel K, Vente A, Bechthold A (2006) Biosynthesis of the terpene phenalinolactone in Streptomyces sp. Tü6071: analysis of the gene cluster and generation of derivatives. Chem Biol 13:365–377. doi:10.1016/j.chembiol.2006.01.011
Tetzlaff CN, You Z, Cane DE, Takamatsu S, Omura S, Ikeda H (2006) A gene cluster for biosynthesis of the sesquiterpenoid antibiotic pentalenolactone in Streptomyces avermitilis. Biochemistry 45:6179–6186. doi:10.1021/bi060419n
Motohashi K, Ueno R, Sue M, Furihata K, Matsumoto T, Dairi T, Omura S, Seto H (2007) Studies on terpenoids produced by actinomycetes: oxaloterpins A, B, C, D, and E, diterpenes from Streptomyces sp. KO-3988. J Nat Prod 70:1712–1717. doi:10.1021/np070326m
Komatsu M, Tsuda M, Omura S, Oikawa H, Ikeda H (2008) Identification and functional analysis of genes controlling biosynthesis of 2-methylisoborneol. Proc Natl Acad Sci USA 105:7422–7427. doi:10.1073/pnas.0802312105
Dairi T (2005) Studies on biosynthetic genes and enzymes of isoprenoids produced by actinomycetes. J Antibiot 58:227–243. doi:10.1038/ja.2005.27
Daum M, Herrmann S, Wilkinson B, Bechthold A (2009) Genes and enzymes involved in bacterial isoprenoid biosynthesis. Curr Opin Chem Biol 13:180–188. doi:10.1016/j.cbpa.2009.02.029
Rohmer M (2003) Mevalonate-independent methylerythritol phosphate pathway for isoprenoid biosynthesis. Elucidation and distribution. Pure Appl Chem 75:375–387. doi:10.1351/pac200375020375
Takahashi S, Kuzuyama T, Watanabe H, Seto H (1998) A 1-deoxy-d-xylulose 5-phosphate reductoisomerase catalyzing the formation of 2-C-methyl-d-erythritol 4-phosphate in an alternative nonmevalonate pathway for terpenoid biosynthesis. Proc Natl Acad Sci USA 95:9879–9884. doi:10.1073/pnas.95.17.9879
Adrio JL, Demain AL (2006) Genetic improvement of processes yielding microbial products. FEMS Microbiol Rev 30:187–214. doi:10.1111/j.1574-6976.2005.00009
Nielsen J (1998) The role of metabolic engineering in the production of secondary metabolites. Curr Opin Microbiol 1:330–336. doi:10.1016/S1369-5274(98)80037-4
Gerber NN, Lechevalier HA (1965) Geosmin, an earthy-smelling substance isolated from actinomycetes. Appl Microbiol 13:935–938. doi:10.3109/10408417909082014
Gerber NN (1979) Volatile substances from actinomycetes: their role in the odor pollution of water. CRC Crit Rev Microbiol 7:191–214. doi:10.3109/10408417909082014
Gust B, Challis GL, Fowler K, Kieser T, Chater KF (2003) PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin. Proc Natl Acad Sci USA 100:1541–1546. doi:10.1073/pnas.0337542100
Cane DE, He X, Kobayashi S, Omura S, Ikeda H (2006) Geosmin biosynthesis in Streptomyces avermitilis: molecular cloning, expression, and mechanistic study of the germacradienol/geosmin synthase. J Antibiot 59:471–479. doi:10.1038/ja.2006.66
Jiang J, He X, Cane DE (2008) Geosmin biosynthesis. Mechanism of the fragmentation-rearrangement in the conversion of germacradienol to geosmin. J Am Chem Soc 130:428–429. doi:10.1021/ja077792i
Ghimire GP, Oh TJ, Lee HC, Kim BG, Sohng JK (2008) Cloning and functional characterization of the germacradienol synthase (spterp13) from Streptomyces peucetius ATCC 27952. J Microbiol Biotechnol 18:1216–1220
Bierman M, Logan R, O’Brien K, Seno ET, Rao RN, Schoner BE (1992) Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene 116:43–49. doi:10.1016/0378-1119(92)90627-2
MacNeil DJ, Occi JL, Gewain KM, MacNeil T, Gibbons PH, Rudy CL, Danis SJ (1992) Complex organisation of the Streptomyces avermitilis genes encoding the avermectin polyketide synthase. Gene 115:119–125. doi:10.1016/0378-1119(92)90549-5
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. A laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York
Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA (2000) Practical Streptomyces genetics. The John Innes Foundation, Norwich
Park JW, Jung WS, Park SR, Park BC, Yoon YJ (2007) Analysis of intracellular short organic acid-coenzyme A esters from actinomycetes using liquid chromatography-electrospray ionization-mass spectrometry. J Mass Spectrom 42:1136–1147. doi:10.1002/jms.1240
Sthapit B, Oh T-J, Lamichhane R, Liou KK, Lee HC, Kim CG, Sohng JK (2004) Neocarzinostatin naphthoate synthase: an unique iterative type I PKS from neocarzinostatin producer Streptomyces carzinostaticus. FEBS Lett 566:201–206. doi:10.1016/j.febslet.2004.04.033
Grimm A, Madduri K, Ali A, Hutchinson CR (1994) Characterization of the Streptomyces peucetius ATCC 29050 genes encoding doxorubicin polyketide synthase. Gene 151:1–10. doi:10.1016/0378-1119(94)90625-4
Bao W, Sheldon PJ, Wendt-Pienkowski E, Hutchinson CR (1999) The Streptomyces peucetius dpsC gene determines the choice of starter unit in biosynthesis of the daunorubicin polyketide. J Bacteriol 181:4690–4695
Chohnan S, Furukawa H, Fujio T, Nishihara H, Takamura Y (1997) Changes in the size and composition of intracellular pools of nonesterified coenzyme A and coenzyme A thioesters in aerobic and facultatively anaerobic bacteria. Appl Environ Microbiol 63:553–560
Vadalia RV, Bennett GN, San KY (2004) Cofactor engineering of intracellular CoA/acetyl-CoA and its effect on metabolic flux redistribution in Escherichia coli. Metab Eng 6:133–139. doi:10.1016/j.ymben.2004.02.001
Li S-J, Cronan JE Jr (1993) Growth rate regulation of Escherichia coli acetyl coenzyme A carboxylase, which catalyzes the first committed step of lipid biosynthesis. J Bacteriol 175:332–340
Ryu YG, Butler MJ, Chater KF, Lee KJ (2006) Engineering of primary carbohydrate metabolism for increased production of actinorhodin in Streptomyces coelicolor. Appl Environ Microbiol 72:7132–7139. doi:10.1128/AEM.01308-06
Volokhan O, Sletta H, Sekurova ON, Ellingsen TE, Zotchev SB (2005) An unexpected role for the putative 4′-phosphopantetheinyl transferase-encoding gene nysF in the regulation of nystatin biosynthesis in Streptomyces noursei ATCC 11455. FEMS Microbiol Lett 249:57–64. doi:10.1016/j.femsle.2005.05.052
Sun Y, Zhou X, Liu J, Bao K, Zhang G, Tu G, Kieser T, Deng Z (2002) ‘Streptomyces nanchangensis’, a producer of the insecticidal polyether antibiotic nanchangmycin and the antiparasitic macrolide meilingmycin, contains multiple polyketide gene clusters. Microbiology 148:361–371
Acknowledgment
This study was supported by a grant of the National R&D Program for Cancer Control, Ministry of Health & Welfare, Republic of Korea (0720260).
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Singh, B., Oh, TJ. & Sohng, J.K. Exploration of geosmin synthase from Streptomyces peucetius ATCC 27952 by deletion of doxorubicin biosynthetic gene cluster. J Ind Microbiol Biotechnol 36, 1257–1265 (2009). https://doi.org/10.1007/s10295-009-0605-0
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DOI: https://doi.org/10.1007/s10295-009-0605-0