Abstract
More than 3,000 species are listed as critically endangered worldwide, and various conservation measures such as habitat restoration, assisted reproduction and establishment of ex situ populations would be required to prevent their extinction. We determined the genotype of all 15 known wild clumps using nuclear microsatellite markers for Stachyurus macrocarpus var. prunifolius, a critically endangered shrub endemic to the Ogasawara (Bonin) Islands of Japan. In addition, the seedlings propagated from seeds taken from one wild clumps were genotyped. The results of complete genotyping showed that both wild and nursery populations had population-specific alleles. Two alleles were detected only in the nursery population, indicating the existence of undiscovered mature individuals in the wild. Four alleles were found only in the wild and were detected in two geographically isolated clumps, and this finding may propose that re-introduction and transplantation between different sites requires sensitive handling in terms of the conservation of evolutionary significant units. These results show that complete genotyping can provide essential genetic and ecological information for effective management of endangered species.
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References
Abe T (2006) Threatened pollination systems in native flora of the Ogasawara (Bonin) Islands. Ann Bot 98:317–334
Abe T, Hoshi Y (2008) Ecological characteristics of the endangered shrub Stachyurus macrocarpus var. prunifolius Tuyama revealed by a population discovery in Haha-jima Island (Ogasawara). Jpn J Conserv Ecol 13:219–223
Abe T, Wada K, Nakagoshi N (2008) Extinction threats of a narrowly endemic shrub, Stachyurus macrocarpus (Stachyuraceae) in the Ogasawara Islands. Plant Ecol 198:169–183
Armbruster P, Reed DH (2005) Inbreeding depression in benign and stressful environments. Heredity 95:235–242
Bunn E (2005) Development of in vitro methods for ex situ conservation of Eucalyptus impensa, an endangered mallee from southwest Western Australia. Plant Cell Tiss Org 83:97–102
Drummond RSM, Keeling DJ, Richardson TE, Gardner RC, Wright SD (2000) Genetic analysis and conservation of 31 surviving individuals of a rare New Zealand tree, Metrosideros bartlettii (Myrtaceae). Mol Ecol 9:1149–1157
Environment Agency of Japan (2000) Threatened wildlife of Japan: red data book, vascular plants (in Japanese), 2nd edn. Japan Wildlife Research Center, Tokyo
Frankham R (2005) Genetics and extinction. Biol Conserv 126:131–140
Goudet J (2001) Fstat, a program to estimate and test gene diversities and fixation indices version 2.9.3. http://www2.unil.ch/popgen/softwares/fstat.htm. Accessed July 2012
Ito M, Soejima A, Ono M (1997) Allozyme diversity of Pittosporum (Pittosporaceae) on the Bonin (Ogasawara) Islands. J Plant Res 110:455–462
Kaneko S, Isagi Y, Nobushima F (2008) Genetic differentiation among fragmented populations in an oceanic island: the case of Metrosideros boninensis, an endangered endemic tree species in the Bonin Islands. Plant Spec Biol 23:119–128
Kaneko S, Abe T, Isagi Y (2009) Development of microsatellite markers for Stachyurus macrocarpus and Stachyurus macrocarpus var. prunifolius (Stachyuraceae), critically endangered shrub species endemic to the Bonin Islands. Conserv Genet 10:1863–1865
Krauss SL, Dixon B, Dixon KW (2002) Rapid genetic decline in a translocated population of the endangered plant Grevillea scapigera. Conserv Biol 16:986–994
Li YY, Chen XY, Zhang X, Wu TY, Lu HP, Cai YW (2005) Genetic differences between wild and artificial populations of Metasequoia glyptostroboides Hu et Cheng (Taxodiaceae): implications for species recovery. Conserv Biol 19:224–231
Marshall TC, Spalton JA (2000) Simultaneous inbreeding and outbreeding depression in reintroduced Arabian oryx. Anim Conserv 3:241–248
Milligan B (1992) Plant DNA isolation. In: Hoelzel AR (ed) Molecular genetic analysis of populations: a practical approach. IRL Press, Oxford, pp 59–88
Ministry of Environment of Japan (2007) Red List of Threatened Plants of Japan. Tokyo: Ministry of Environment of Japan. http://www.biodic.go.jp/english/rdb/rdb_f.html. Accessed July 2010
Mori K, Kaneko S, Isagi Y, Murakami N, Kato H (2008) Isolation and characterization of 10 microsatellite loci in Callicarpa subpubescens (Verbenaceae), an endemic species of the Bonin Islands. Mol Ecol Resour 8:1426–1428
O’Brien SJ, Joslin P, Smith GL, Wolfe R, Schaffer N, Heath E, Ott-Joslin J, Rawal PP, Bhattacherjee KK, Martenson JS (1987) Evidence for African origins of founders of the Asiatic lion species survival plan. Zoo Biol 6:99–116
Ohi T, Murata J (1999) Geographical variations in chloroplast DNA of Stachyurus macrocarpus Koidz. and S. praecox Sieb. et Zucc. (Stachyuraceae). Ogasawara Resear 25:1–25
Ohi T, Wakabayashi M, Wu S, Murata J (2003) Phylogeography of Stachyurus praecox (Stachyuraceae) in the Japanese Archipelago based on chloroplast DNA haplotypes. J Jpn Bot 78:1–14
Parks JC, Werth CR (1993) A study of spatial features of clones in a population of bracken fern, Pteridium aquilinum (Dennstaedtiaceae). Am J Bot 80:537–544
Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295
Rieseberg LH, Swensen SM (1996) Conservation genetics of endangered island plants. In: Avise JC, Hamrick JL (eds) Conservation genetics: case histories from nature. Chapman and Hall, New York, pp 305–334
Robichaux RH, Friar RH, Mount DW (1997) Molecular genetics consequence of a population bottleneck associated with re-introduction of the Mauna Kea silversword (Argyroxiphium sandwicense ssp. sandwicense [Asteraceae]). Conserv Biol 11:1140–1146
Schemske DW, Husband BC, Ruckelshaus CG, Parker IM, Bishop JG (1994) Evaluating approaches to the conservation of rare and endangered plants. Ecology 75:584–606
Soejima A, Nagamasu H, Ito M, Ono M (1994) Allozyme diversity and the evolution of Symplocos (Symplocaceae) on the Bonin (Ogasawara) Islands. J Plant Resear 107:221–227
Strobeck C (1979) Partial selfing and linkage: the effect of a heterotic locus on a nutral locus. Genetics 92:305–315
Sydes MA, Peakall R (1998) Extensive clonality in the endangered shrub Haloragodendron lucasii (Haloragaceae) revealed by allozymes and RAPDs. Mol Ecol 7:87–93
Takayama K, Ohi-Toma T, Kudoh H, Kato H (2005) Origin and diversification of Hibiscus glaber, species endemic to the oceanic Bonin Islands, revealed by chloroplast DNA polymorphism. Mol Ecol 14:1059–1071
Tani N, Yoshimaru H, Kawahara T, Hoshi Y, Nobushima F, Yasui T (2006) Determination of the genetic structure of remnant Morus boninensis Koidz. trees to establish a conservation program on the Bonin Islands, Japan. BMC Ecol 6:14
Thuillet A-C, Bru D, David J, Roumet P, Santoni S, Surdille P, Bataillon T (2002) Direct estimation of mutation rate for 10 microsatellite loci in durum wheat, Triticum turgidum (L.) Thell. ssp dursum desf. Mol Biol Evol 19:122–125
Toyoda T (2003) Flora of Bonin Islands. Aboc-sha Co., Ltd, Kamakura (in Japanese)
Tuyama T (1939) Plantæ Boninensis Nov æ vel Criticæ. XII. Bot Mag Tokyo 53:1–7
Vié JC, Hilton-Taylor C, Stuart SN (2009) Wildlife in a changing world—an analysis of the 2008 IUCN red list of threatened species. IUCN, Gland
Vigouroux Y, Jaqueth JS, Yoshihiro M, Smith OS, Beavis WD, Smith JSC, Doebley J (2002) Rate and pattern of mutation at microsatellite loci in maize. Mol Biol Evol 19:1251–1260
Wilkinson T, Wetten A, Prychid C, Fay MF (2003) Suitability of cryopreservation for the long term storage of rare and endangered plant species: a case history for Cosmos atrosanguineus. Ann Bot 91:65–74
Acknowledgments
We thank F. Shibazaki and Y. Hoshi for sampling. We also thank J. Worth for his helpful comments on drafts of this manuscript. This work was supported by Grants in Aid for Scientific Research (20241056) from the Japan Society for the Promotion of Science, and the Environment Research and Technology Development Fund (D-0903) of the Ministry of the Environment, Japan.
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Kaneko, S., Abe, T. & Isagi, Y. Complete genotyping in conservation genetics, a case study of a critically endangered shrub, Stachyurus macrocarpus var. prunifolius (Stachyuraceae) in the Ogasawara Islands, Japan. J Plant Res 126, 635–642 (2013). https://doi.org/10.1007/s10265-013-0554-6
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DOI: https://doi.org/10.1007/s10265-013-0554-6