Skip to main content

Advertisement

Log in

Genetic variation of Picea jezoensis populations in South Korea revealed by chloroplast, mitochondrial and nuclear DNA markers

  • Regular Paper
  • Published:
Journal of Plant Research Aims and scope Submit manuscript

Abstract

Genetic variation associated with Picea jezoensis populations of South Korea was investigated using chloroplast (cp), mitochondrial (mt) and nuclear DNA markers. In South Korea, P. jezoensis is distributed across a very restricted area, being found on the summits of three mountains: Mts. Jiri, Dokyu and Gyebang. Examination of five region restriction enzyme combinations for mtDNA and four for cpDNA revealed haplotypes endemic to South Korea. The Gyebang population, the most northerly and most isolated, was genetically distinct from the other populations. Nuclear microsatellite markers indicated, overall, a low level of genetic diversity (H e = 0.406) in South Korea; this could be attributed to genetic drift and/or founder effects associated with historical events. The Wilcoxon sign-rank test did not indicate a recent bottleneck in any of the populations irrespective of the model considered (infinite allele model, two-phased model of mutation, and stepwise mutation model). Microsatellite markers also demonstrated that the Gyebang population was distinct from the others. The results of this study could be used as the basis for conservation guidelines for the management of this species in South Korea.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  • Aizawa M, Yoshimaru H, Saito H, Katsuki T, Kawahara T, Kitamura K, Shi F, Kaji M (2007) Phylogeography of a northeast Asian spruce, Picea jezoensis, inferred from variation observed in organelle DNA markers. Mol Ecol 16:3393–3405

    Article  PubMed  CAS  Google Scholar 

  • Aizawa M, Yoshimaru H, Katsuki T, Kaji M (2008a) Imprint of post-glacial history in a narrowly distributed endemic spruce, Picea alcoquiana, in central Japan observed in nuclear microsatellites and organelle DNA markers. J Biogeogr 35:1295–1307

    Article  Google Scholar 

  • Aizawa M, Yoshimaru H, Saito H, Katsuki T, Kawahara T, Kitamura K, Shi F, Savirov R, Kaji M (2008b) Range-wide genetic structure in a north-east Asian spruce (Picea jezoensis) determined in nuclear microsatellite markers. J Biogeogr (in press)

  • Bandelt HJ, Forster P, Röhl A (1999) Median-joining network for inferring intraspecific phylogenies. Mol Biol Evol 16:37–48

    PubMed  CAS  Google Scholar 

  • Chen J, Tauer CG, Huang Y (2002) Paternal chloroplast inheritance patterns in pine hybrids detected with trnL-trnF intergenic region polymorphism. Theor Appl Genet 104:1307–1311

    Article  PubMed  CAS  Google Scholar 

  • El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa L. Skeels) endemic to Morocco. Theor Appl Genet 92:832–839

    Article  Google Scholar 

  • Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http://www2.unil.ch/popgen/softwares/fstat.htm

  • Heuertz M, Hausman JF, Hardy OJ, Vendramin GG, Frascaria-Lacoste N, Vekemans X (2004) Nuclear microsatellites reveal contrasting patterns of genetic structure between western and southeastern European populations of the common ash (Fraxinus excelsior L.). Evolution 58(5):976–988

    PubMed  Google Scholar 

  • Hipkins VD, Krutovskii KV, Strauss SH (1994) Organelle genomes in conifers: structure, evolution, and diversity. For Genet 1:179–189

    Google Scholar 

  • Hodgetts RB, Aleksiuk MA, Brown A, Clarke C, Macdonald E, Nadeem S, Khasa D (2001) Development of microsatellite markers for white spruce (Picea glauca) and related species. Theor Appl Genet 102:1252–1258

    Article  CAS  Google Scholar 

  • Hughes CR, Queller DC (1993) Detection of highly polymorphic microsatellite loci in a species with little allozyme polymorphism. Mol Ecol 2:131–137

    Article  PubMed  CAS  Google Scholar 

  • Kong WS, Watts D (1993) Geobotany 19: the plant geography of Korea with an emphasis on the alpine zones. Kluwer, Dordrecht

    Google Scholar 

  • Langella O (2007) POPULATIONS (version 1.2.30). http://bioinformatics.org/~tryphon/populations/

  • Lee CB (1982) Illustrated flora of Korea. Hyangmoonsa, Seoul, pp 59–60

    Google Scholar 

  • Lee CB (1985) Dendrology, 9th edn. Hyangmoonsa, Seoul, p 235

    Google Scholar 

  • Neale DB, Sederoff RR (1988) Inheritance and evolution of conifer organelle genomes. In: Hanover J, Keathley D (eds) Genetic manipulation of woody plants. Plenum, New York, pp 251–264

    Google Scholar 

  • Neale DB, Sederoff RR (1989) Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in loblolly pine. Theor Appl Genet 77:212–216

    Article  Google Scholar 

  • Nei M (1983) Genetic polymorphism and the role of mutation in evolution. In: Nei M, Koehn R (eds) Evolution of genes and proteins. Sinauer, Sunderland, pp 165–190

    Google Scholar 

  • Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York

  • Pfeiffer A, Olivieri AM, Morgante M (1997) Identification and characterization of microsatellites in Norway spruce (Picea abies K.). Genome 40:411–419

    Article  PubMed  CAS  Google Scholar 

  • Piry S, Luikart G, Cornuet JM (1999) BOTTLENECK: a computer program for detecting recent reduction in the effective population size using a allele frequency data. J Hered 90:502–503

    Article  Google Scholar 

  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959

    PubMed  CAS  Google Scholar 

  • Sato T, Isagi Y, Sakio H, Osumi K, Goto S (2006) Effect of gene flow on spatial genetic structure in the riparian canopy tree Cercidiphyllum japonicum revealed by microsatellite analysis. Heredity 96:79–84

    PubMed  CAS  Google Scholar 

  • Schneider SJ, Kueffer M, Roessli D, Excoffier L (1997) Arlequin, Version 2.0: software for population genetic data analysis. Genetic and Biometry Laboratory, University of Geneva, Switzerland. http://lgb.unige.ch/arlequin/

  • Sugaya T, Yoshimaru H, Takeuchi T, Katsuta M, Fujimoto K, Changtragoon S (2003) Development and polymorphism of simple sequence repeat DNA markers for Bruguiera gymnorrhiza (L.) Lamk. Mol Ecol Note 3:88–90

    Article  CAS  Google Scholar 

  • Sutton BCS, Flanagan DJ, Gawley JR, Newton CH, Lester DT, El-Kassaby YA (1991) Inheritance of chloroplast and mitochondrial DNA in Picea and composition of hybrids from introgression zones. Theor Appl Genet 82:242–248

    Article  Google Scholar 

  • Takahashi T, Tani N, Taira H, Tsumura Y (2005) Microsatellite markers reveal high allelic variation in natural populations of Cryptomeria japonica near refugial areas of the last glacial period. J Plant Res 118:83–90

    Article  PubMed  CAS  Google Scholar 

  • Thomas BR, Macdonald SE, Hicks M, Adams DL, Hodgetts RB (1999) Effects of reforestration methods on genetic diversity of lodgepole pine: an assessment using microsatellite and randomly amplified polymorphic DNA markers. Theor Appl Genet 98:793–801

    Article  Google Scholar 

  • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370

    Article  Google Scholar 

  • Yamazaki T (1995) Pinaceae. In: Iwatsuki K, Yamazaki T, Boufford DE, Ohba H (eds) Flora of Japan: vol 1. Pteriodophyta and Gymnospermae. Kodansya, Tokyo, pp 266–277

    Google Scholar 

  • Yeh FC, Boyle T (1999) POPGENE Version 1.32. http://www.ualberta.ca/~fyeh/

Download references

Acknowledgments

This study was supported by the post-doctoral fellowship program for foreign researchers run by the Korea Forest Research Institute. The authors thank S.-D. Hur, J.-J. Lee, J.-H. Song and B.-H. Yang for their help in collecting needles, and the Korea National Park Service for its cooperation in allowing us to collect samples from two national peaks: Dokyu and the Jiri mountains. We also thank M. Aizawa, Y. Tsumura and Y. Tsuda for their kind advice and valuable suggestions.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yoshinari Moriguchi.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Moriguchi, Y., Kang, KS., Lee, KY. et al. Genetic variation of Picea jezoensis populations in South Korea revealed by chloroplast, mitochondrial and nuclear DNA markers. J Plant Res 122, 153–160 (2009). https://doi.org/10.1007/s10265-008-0210-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10265-008-0210-8

Keywords

Navigation