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Parameters and Efficiency of Direct Gene Disruption by Zinc Finger Nucleases in Medaka Embryos

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Abstract

Zinc finger nucleases (ZFNs) can generate targeted gene disruption (GD) directly in developing embryos of zebrafish, mouse and human. In the fish medaka, ZFNs have been attempted on a transgene. Here, we developed procedures and parameters for ZFN-mediated direct GD on the gonad-specifically expressed gsdf locus in medaka. A pair of ZFNs was designed to target the first exon of gsdf and their synthetic mRNAs were microinjected into 1-cell stage embryos. We reveal dose-dependent survival rate and GD efficiency. In fry, ZFN mRNA injection at 10 ng/μl led to a GD efficiency of 30 %. This value increased up to nearly 100 % when the dose was enhanced to 40 ng/μl. In a typical series of experiments of ZFN mRNA injection at 10 ng/μl, 420 injected embryos developed into 94 adults, 4 of which had altered gsdf alleles. This leads to a GD efficacy of ∼4 % in the adulthood. Sequencing revealed a wide variety of subtle allelic alterations including additions and deletions of 1∼18 bp in length in ZFN-injected samples. Most importantly, one of the 4 adults examined was capable of germline transmission to 15.2 % of its F1 progeny. Interestingly, ontogenic analyses of the allelic profile revealed that GD commenced early in development, continued during subsequent stages of development and in primordia for different adult organs of the three germ layers. These results demonstrate the feasibility and—for the first time to our knowledge—the efficacy of ZFN-mediated direct GD on a chromosomal gene in medaka embryos.

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Abbreviations

GD:

Gene disruption

gsdf:

Gonadal soma derived factor

Hm:

Homoduplex

Ht:

Heteroduplex

WT:

Wild-type

ZFN:

Zinc finger nuclease

References

  • Ansai S, Ochiai H, Kanie Y, Kamei Y, Gou Y, Kitano T, Yamamoto T, Kinoshita M (2012) Targeted disruption of exogenous EGFP gene in medaka using zinc-finger nucleases. Develop Growth Differ 54:546–556

    Article  CAS  Google Scholar 

  • Ansai S, Sakuma T, Yamamoto T, Ariga H, Uemura N, Takahashi R, Kinoshita M (2013) Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases. Genetics 193:739–749

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Baker M (2012) Gene-editing nucleases. Nat Meth 9:23–26

    Article  CAS  Google Scholar 

  • Capecchi MR (2005) Gene targeting in mice: functional analysis of the mammalian genome for the twenty-first century. Nat Rev Genet 6:507–512

    Article  CAS  PubMed  Google Scholar 

  • Carroll D (2011) Genome engineering with zinc-finger nucleases. Genetics 188:773–782

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Chen J, Zhang X, Wang T, Li Z, Guan G, Hong Y (2012) Efficient detection, quantification and enrichment of subtle allelic alterations. DNA Res 19:423–433

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Collins FS, Rossant J, Wurst W (2007) A mouse for all reasons. Cell 128:9–13

    Article  CAS  PubMed  Google Scholar 

  • Cui X, Ji D, Fisher DA, Wu Y, Briner DM, Weinstein EJ (2011) Targeted integration in rat and mouse embryos with zinc-finger nucleases. Nat Biotechnol 29:64–67

    Article  CAS  PubMed  Google Scholar 

  • Doyon Y, Mccammon JM, Miller JC, Faraji F, Ngo C, Katibah GE, Amora R, Hocking TD, Zhang L, Rebar EJ, Gregory PD, Urnov FD, Amacher SL (2008) Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases. Nat Biotech 26:702–708

    Article  CAS  Google Scholar 

  • Gautier A, Le Gac F, Lareyre JJ (2011) The gsdf gene locus harbors evolutionary conserved and clustered genes preferentially expressed in fish previtellogenic oocytes. Gene 472:7–17

    Article  CAS  PubMed  Google Scholar 

  • Hong Y, Winkler C, Schartl M (1996) Pluripotency and differentiation of embryonic stem cell lines from the medakafish (Oryzias latipes). Mech Dev 60:33–44

    Article  CAS  PubMed  Google Scholar 

  • Hong Y, Winkler C, Schartl M (1998) Production of medakafish chimeras from a stable embryonic stem cell line. Proc Natl Acad Sci U S A 95:3679–3684

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Hong Y, Liu T, Zhao H, Xu H, Wang W, Liu R, Chen T, Deng J, Gui J (2004) Establishment of a normal medakafish spermatogonial cell line capable of sperm production in vitro. Proc Natl Acad Sci U S A 101:8011–8016

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Hong N, Li M, Zeng Z, Yi M, Deng J, Gui J, Winkler C, Schartl M, Hong Y (2010) Accessibility of host cell lineages to medaka stem cells depends on genetic background and irradiation of recipient embryos. Cell Mol Life Sci 67:1189–1202

    Article  CAS  PubMed  Google Scholar 

  • Iwamatsu T (2004) Stages of normal development in the medaka Oryzias latipes. Mech Dev 121:605–618

    Article  CAS  PubMed  Google Scholar 

  • Katogi R, Nakatani Y, Shin-I T, Kohara Y, Inohaya K, Kudo A (2004) Large-scale analysis of the genes involved in fin regeneration and blastema formation in the medaka, Oryzias latipes. Mech Dev 121:861–872

    Article  CAS  PubMed  Google Scholar 

  • Li M, Hong N, Xu H, Yi M, Li C, Gui J, Hong Y (2009) Medaka vasa is required for migration but not survival of primordial germ cells. Mech Dev 126:366–381

    Article  CAS  PubMed  Google Scholar 

  • Liu T, Liu L, Wei Q, Hong Y (2011) Sperm nuclear transfer and transgenic production in the fish medaka. Int J Biol Sci 7:469–475

    Article  PubMed Central  PubMed  Google Scholar 

  • Meng X, Noyes MB, Zhu LJ, Lawson ND, Wolfe SA (2008) Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases. Nat Biotechnol 26:695–701

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Myosho T, Otake H, Masuyama H, Matsuda M, Kuroki Y, Fujiyama A, Naruse K, Hamaguchi S, Sakaizumi M (2012) Tracing the emergence of a novel sex-determining gene in medaka, Oryzias luzonensis. Genetics 191:163–170

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Nasevicius A, Ekker SC (2000) Effective targeted gene ‘knockdown’ in zebrafish. Nat Genet 26:216–220

    Article  CAS  PubMed  Google Scholar 

  • Sawatari E, Shikina S, Takeuchi T, Yoshizaki G (2007) A novel transforming growth factor-beta superfamily member expressed in gonadal somatic cells enhances primordial germ cell and spermatogonial proliferation in rainbow trout (Oncorhynchus mykiss). Dev Biol 301:266–275

    Article  CAS  PubMed  Google Scholar 

  • Shibata Y, Paul-Prasanth B, Suzuki A, Usami T, Nakamoto M, Matsuda M, Nagahama Y (2010) Expression of gonadal soma derived factor (GSDF) is spatially and temporally correlated with early testicular differentiation in medaka. Gene Expr Patterns 10:283–289

    Article  CAS  PubMed  Google Scholar 

  • Tong C, Li P, Wu NL, Yan Y, Ying Q-L (2010) Production of p53 gene knockout rats by homologous recombination in embryonic stem cells. Nature 467:211–213

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Urnov FD, Rebar EJ, Holmes MC, Zhang HS, Gregory PD (2010) Genome editing with engineered zinc finger nucleases. Nat Rev Genet 11:636–646

    Article  CAS  PubMed  Google Scholar 

  • Wang R-H, Sengupta K, Li C, Kim H-S, Cao L, Xiao C, Kim S, Xu X, Zheng Y, Chilton B, Jia R, Zheng Z-M, Appella E, Wang XW, Ried T, Deng C-X (2008) Impaired DNA damage response, genome instability, and tumorigenesis in SIRT1 mutant mice. Cancer Cell 14:312–323

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Watanabe T, Asaka S, Kitagawa D, Saito K, Kurashige R, Sasado T, Morinaga C, Suwa H, Niwa K, Henrich T, Hirose Y, Yasuoka A, Yoda H, Deguchi T, Iwanami N, Kunimatsu S, Osakada M, Loosli F, Quiring R, Carl M, Grabher C, Winkler S, Del Bene F, Wittbrodt J, Abe K, Takahama Y, Takahashi K, Katada T, Nishina H, Kondoh H, Furutani-Seiki M (2004) Mutations affecting liver development and function in Medaka, Oryzias latipes, screened by multiple criteria. Mech Dev 121:791–802

    Article  CAS  PubMed  Google Scholar 

  • Xu X, Wagner KU, Larson D, Weaver Z, Li C, Ried T, Hennighausen L, Wynshaw-Boris A, Deng CX (1999) Conditional mutation of Brca1 in mammary epithelial cells results in blunted ductal morphogenesis and tumour formation. Nat Genet 22:37–43

    Article  CAS  PubMed  Google Scholar 

  • Yan Y, Hong N, Chen T, Li M, Wang T, Guan G, Qiao Y, Chen S, Schartl M, Li CM, Hong Y (2013) p53 gene targeting by homologous recombination in fish ES cells. PLoS One 8:e59400

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Yano A, Guyomard R, Nicol B, Jouanno E, Quillet E, Klopp C, Cabau C, Bouchez O, Fostier A, Guiguen Y (2012) An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss. Curr Biol 22:1423–1428

    Article  CAS  PubMed  Google Scholar 

  • Yi M, Hong N, Hong Y (2009) Generation of medaka fish haploid embryonic stem cells. Science 326:430–433

    Article  CAS  PubMed  Google Scholar 

  • Zhao H, Hong N, Lu W, Zeng H, Song J, Hong Y (2011) Fusion gene vectors allowing for simultaneous drug selection, cell labeling, and reporter assay in vitro and in vivo. Anal Chem 84:987–993

    Article  PubMed  Google Scholar 

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Acknowledgments

We thank J. Deng for fish breeding. This work was supported by the National Research Foundation Singapore (NRF-CRP7-2010-03) and the Japan Core Research for Evolutional Science and Technology (CREST). We acknowledge the NUS for scholarship to X. Zhang and J. B. Chen.

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The authors declare that they have no conflict of interest.

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Correspondence to Kiyoshi Naruse or Yunhan Hong.

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Xi Zhang and Guijun Guan contributed equally to this work.

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Zhang, X., Guan, G., Chen, J. et al. Parameters and Efficiency of Direct Gene Disruption by Zinc Finger Nucleases in Medaka Embryos. Mar Biotechnol 16, 125–134 (2014). https://doi.org/10.1007/s10126-013-9556-6

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