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Pattern of distribution of Prevotella species/phylotypes associated with healthy gingiva and periodontal disease

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Abstract

The purpose of the present study was to obtain diverse profiles of Prevotella species associated with gingival sites in an isolated Aboriginal and an urban community by phylogenetic analysis and to establish patterns of association of identified Prevotella species in gingival sites. Species/phylotypes identified from the phylogenetic analysis of near full-length Bacteroidetes 16S rRNA gene sequences cloned from subgingival plaque samples obtained from an Aboriginal community were compared with those from an ethnically diverse urban metropolitan population suffering from periodontal disease. Specific primer sets were designed and validated for 22 distinct Prevotella species from the 24 species/phylotypes identified from both populations. Within the isolated Aboriginal community, gingival sites in adults were colonised by a mean of 15 different Prevotella species. Prevotella sp. oral clone P4PB24, Prevotella intermedia, Prevotella oralis, Prevotella denticola and Prevotella sp. strain P4P62 had the highest association with increasing probing depth in diseased sites (p < 0.05). P. intermedia and Prevotella sp. oral clone P4PB24, the Prevotella species significantly associated with increasing probing depth in diseased gingival sites and also strongly associated with P. gingivalis load (p < 0.05) in diseased gingival sites, showed significant correlation for co-colonisation (r = 0.6). Prevotella sp. oral clone B31FD, showing strong association with P. gingivalis load (p < 0.05) in diseased gingival sites, showed no significant correlation for co-colonisation with any other Prevotella species. This study provides a comprehensive analysis of Prevotella species associated with gingival sites for the informative evaluation of the epidemiology of infection by this genus.

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References

  1. Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG (2010) The human oral microbiome. J Bacteriol 192:5002–5017

    Article  PubMed  CAS  Google Scholar 

  2. Nadkarni MA, Caldon CE, Chhour KL, Fisher IP, Martin FE, Jacques NA, Hunter N (2004) Carious dentine provides a habitat for a complex array of novel Prevotella-like bacteria. J Clin Microbiol 42:5238–5244

    Article  PubMed  CAS  Google Scholar 

  3. Paster BJ, Boches SK, Galvin JL, Ericson RE, Lau CN, Levanos VA, Sahasrabudhe A, Dewhirst FE (2001) Bacterial diversity in human subgingival plaque. J Bacteriol 183:3770–3783

    Article  PubMed  CAS  Google Scholar 

  4. Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, Francois F, Perez-Perez G, Blaser MJ, Relman DA (2006) Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci USA 103:732–737

    Article  PubMed  CAS  Google Scholar 

  5. Chhour KL, Nadkarni MA, Byun R, Martin FE, Jacques NA, Hunter N (2005) Molecular analysis of microbial diversity in advanced caries. J Clin Microbiol 43:843–849

    Article  PubMed  CAS  Google Scholar 

  6. Martin FE, Nadkarni MA, Jacques NA, Hunter N (2002) Quantitative microbiological study of human carious dentine by culture and real-time PCR: association of anaerobes with histopathological changes in chronic pulpitis. J Clin Microbiol 40:1698–1704

    Article  PubMed  CAS  Google Scholar 

  7. Alauzet C, Marchandin H, Lozniewski A (2010) New insights into Prevotella diversity and medical microbiology. Future Microbiol 5:1695–1718

    Article  PubMed  Google Scholar 

  8. Bowler PG, Duerden BI, Armstrong DG (2001) Wound microbiology and associated approaches to wound management. Clin Microbiol Rev 14:244–269

    Article  PubMed  CAS  Google Scholar 

  9. Rogers GB, Carroll MP, Bruce KD (2009) Studying bacterial infections through culture-independent approaches. J Med Microbiol 58:1401–1418

    Article  PubMed  CAS  Google Scholar 

  10. Sakamoto H, Karakida K, Otsuru M, Arai M, Shimoda M (2009) A case of brain abscess extended from deep fascial space infection. Oral Surg Oral Med Oral Pathol Oral Radiol Endod 108:e21–e25

    Article  PubMed  Google Scholar 

  11. Sonavane A, Baradkar V, Salunkhe P, D’Souza D, Kumar S (2010) Acute necrotizing pancreatitis with pancreatic abscess due to Prevotella species in a diabetic. Indian J Med Microbiol 28:64–67

    Article  PubMed  CAS  Google Scholar 

  12. van der Gast CJ, Walker AW, Stressmann FA, Rogers GB, Scott P, Daniels TW, Carroll MP, Parkhill J, Bruce KD (2011) Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities. ISME J 5:780–791

    Article  PubMed  Google Scholar 

  13. Socransky SS, Haffajee AD, Cugini MA, Smith C, Kent RL Jr (1998) Microbial complexes in subgingival plaque. J Clin Periodontol 25:134–144

    Article  PubMed  CAS  Google Scholar 

  14. Newman MG, Takei HH, Klokkevold PR, Carranza FA (2006) Carranza’s clinical periodontology, 10th edn. Saunders Elsevier, St. Louis

    Google Scholar 

  15. Teles FR, Haffajee AD, Socransky SS (2008) The reproducibility of curet sampling of subgingival biofilms. J Periodontol 79:705–713

    Article  PubMed  Google Scholar 

  16. Nadkarni MA, Martin FE, Jacques NA, Hunter N (2002) Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 148:257–266

    PubMed  CAS  Google Scholar 

  17. Nadkarni MA, Martin FE, Hunter N, Jacques NA (2009) Methods for optimizing DNA extraction before quantifying oral bacterial numbers by real-time PCR. FEMS Microbiol Lett 296:45–51

    Article  PubMed  CAS  Google Scholar 

  18. Cole JR, Chai B, Marsh TL, Farris RJ, Wang Q, Kulam SA, Chandra S, McGarrell DM, Schmidt TM, Garrity GM, Tiedje JM; Ribosomal Database Project (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31:442–443

    Article  PubMed  CAS  Google Scholar 

  19. Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ (1998) Multiple sequence alignment with Clustal X. Trends Biochem Sci 23:403–405

    Article  PubMed  CAS  Google Scholar 

  20. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5:150–163

    Article  PubMed  CAS  Google Scholar 

  21. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120

    Article  PubMed  CAS  Google Scholar 

  22. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    PubMed  CAS  Google Scholar 

  23. Dahlén G, Leonhardt A (2006) A new checkerboard panel for testing bacterial markers in periodontal disease. Oral Microbiol Immunol 21:6–11

    Article  PubMed  Google Scholar 

  24. Haffajee AD, Socransky SS (1994) Microbial etiological agents of destructive periodontal diseases. Periodontol 2000 5:78–111

    Article  PubMed  CAS  Google Scholar 

  25. Kinane DF (2001) Causation and pathogenesis of periodontal disease. Periodontol 2000 25:8–20

    Article  PubMed  CAS  Google Scholar 

  26. van Winkelhoff AJ, Loos BG, van der Reijden WA, van der Velden U (2002) Porphyromonas gingivalis, Bacteroides forsythus and other putative periodontal pathogens in subjects with and without periodontal destruction. J Clin Periodontol 29:1023–1028

    Article  PubMed  Google Scholar 

  27. Haffajee AD, Bogren A, Hasturk H, Feres M, Lopez NJ, Socransky SS (2004) Subgingival microbiota of chronic periodontitis subjects from different geographic locations. J Clin Periodontol 31:996–1002

    Article  PubMed  CAS  Google Scholar 

  28. Kesavalu L, Sathishkumar S, Bakthavatchalu V, Matthews C, Dawson D, Steffen M, Ebersole JL (2007) Rat model of polymicrobial infection, immunity, and alveolar bone resorption in periodontal disease. Infect Immun 75:1704–1712

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

This study was supported by the Australian National Health and Medical Research Council (grant no. 219185). Essential support was provided by the staff of the Durri Aboriginal Medical Service.

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The authors declare that they have no conflict of interest.

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Correspondence to M. A. Nadkarni.

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Mangala A. Nadkarni and Gina V. Browne made an equal contribution to this research.

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Nadkarni, M.A., Browne, G.V., Chhour, KL. et al. Pattern of distribution of Prevotella species/phylotypes associated with healthy gingiva and periodontal disease. Eur J Clin Microbiol Infect Dis 31, 2989–2999 (2012). https://doi.org/10.1007/s10096-012-1651-5

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