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Rapid specimen preparation to improve the throughput of electron microscopic volume imaging for three-dimensional analyses of subcellular ultrastructures with serial block-face scanning electron microscopy

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Abstract

Serial block-face imaging using scanning electron microscopy enables rapid observations of three-dimensional ultrastructures in a large volume of biological specimens. However, such imaging usually requires days for sample preparation to reduce charging and increase image contrast. In this study, we report a rapid procedure to acquire serial electron microscopic images within 1 day for three-dimensional analyses of subcellular ultrastructures. This procedure is based on serial block-face with two major modifications, including a new sample treatment device and direct polymerization on the rivets, to reduce the time and workload needed. The modified procedure without uranyl acetate can produce tens of embedded samples observable under serial block-face scanning electron microscopy within 1 day. The serial images obtained are similar to the block-face images acquired by common procedures, and are applicable to three-dimensional reconstructions at a subcellular resolution. Using this approach, regional immune deposits and the double contour or heterogeneous thinning of basement membranes were observed in the glomerular capillary loops of an autoimmune nephropathy model. These modifications provide options to improve the throughput of three-dimensional electron microscopic examinations, and will ultimately be beneficial for the wider application of volume imaging in life science and clinical medicine.

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References

  1. Briggman KL, Bock DD (2011) Volume electron microscopy for neuronal circuit reconstruction. Curr Opin Neurobiol 22:154–161

    Article  PubMed  Google Scholar 

  2. Denk W, Briggman KL, Helmstaedter M (2012) Structural neurobiology: missing link to a mechanistic understanding of neural computation. Nat Rev Neurosci 13:351–358

    CAS  PubMed  Google Scholar 

  3. Deerinck TJ, Bushong EA, Lev-Ram V, Shu X, Tsien RY, Ellisman MH (2010) Enhancing serial block-face scanning electron microscopy to enable high resolution 3-D nanohistology of cells and tissues. Microsc Microanal 16:1138–1139

    Article  CAS  Google Scholar 

  4. Tapia JC, Kasthuri N, Hayworth KJ, Schalek R, Lichtman JW, Smith SJ, Buchanan J (2012) High-contrast en bloc staining of neuronal tissue for field emission scanning electron microscopy. Nat Protoc 7:193–206

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Mikula S, Denk W (2015) High-resolution whole-brain staining for electron microscopic circuit reconstruction. Nat Methods 12:541–546

    Article  CAS  PubMed  Google Scholar 

  6. Knott G, Rosset S, Cantoni M (2011) Focussed ion beam milling and scanning electron microscopy of brain tissue. J Vis Exp:e2588

  7. Ohno N, Katoh M, Saitoh Y, Saitoh S, Ohno S (2015) Three-dimensional volume imaging with electron microscopy toward connectome. Microscopy (Oxf) 64:17–26

    Article  Google Scholar 

  8. Johannessen JV (1973) Rapid processing of kidney biopsies for electron microscopy. Kidney Int 3:46–50

    Article  CAS  PubMed  Google Scholar 

  9. McDonald KL (2014) Rapid embedding methods into epoxy and LR White resins for morphological and immunological analysis of cryofixed biological specimens. Microsc Microanal 20:152–163

    Article  CAS  PubMed  Google Scholar 

  10. Otani Y, Ichii O, Otsuka-Kanazawa S, Chihara M, Nakamura T, Kon Y (2015) MRL/MpJ-Fas(lpr) mice show abnormalities in ovarian function and morphology with the progression of autoimmune disease. Autoimmunity 48:402–411

    Article  PubMed  Google Scholar 

  11. Ohno N, Chiang H, Mahad DJ, Kidd GJ, Liu L, Ransohoff RM, Sheng ZH, Komuro H, Trapp BD (2014) Mitochondrial immobilization mediated by syntaphilin facilitates survival of demyelinated axons. Proc Natl Acad Sci USA 111:9953–9958

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ (2012) TrakEM2 software for neural circuit reconstruction. PLoS One 7:e38011

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Estes LW, Apicella JV (1969) A rapid embedding technique for electron microscopy. Lab Invest 20:159–163

    CAS  PubMed  Google Scholar 

  14. Hayat MA, Giaquinta R (1970) Rapid fixation and embedding for electron microscopy. Tissue Cell 2:191–195

    Article  CAS  PubMed  Google Scholar 

  15. Andrews BS, Eisenberg RA, Theofilopoulos AN, Izui S, Wilson CB, McConahey PJ, Murphy ED, Roths JB, Dixon FJ (1978) Spontaneous murine lupus-like syndromes. Clinical and immunopathological manifestations in several strains. J Exp Med 148:1198–1215

    Article  CAS  PubMed  Google Scholar 

  16. Shiozuru D, Ichii O, Kimura J, Nakamura T, Elewa YH, Otsuka-Kanazawa S, Kon Y (2015) MRL/MpJ mice show unique pathological features after experimental kidney injury. Histol Histopathol:11662

  17. Hayat MA (1989) Rinsing, dehydration and embedding. In: Hayat MA (ed) Principles and techniques of electron microscopy, 3rd edn. Cambridge University Press, New York, pp 79–137

    Chapter  Google Scholar 

  18. Coppola A (1979) A rapid method for electron microscopic examination of blood cells. J Clin Pathol 32:162–167

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Rowden G, Lewis MG (1974) Experience with a three-hour electron microscopy biopsy service. J Clin Pathol 27:505–510

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Inaga S, Katsumoto T, Tanaka K, Kameie T, Nakane H, Naguro T (2007) Platinum blue as an alternative to uranyl acetate for staining in transmission electron microscopy. Arch Histol Cytol 70:43–49

    Article  PubMed  Google Scholar 

  21. Yamaguchi K, Suzuki K, Tanaka K (2010) Examination of electron stains as a substitute for uranyl acetate for the ultrathin sections of bacterial cells. J Electron Microsc (Tokyo) 59:113–118

    Article  CAS  Google Scholar 

  22. Hayat MA (1989) Positive staining. In: Hayat MA (ed) Principles and techniques of electron microscopy, 3rd edn. Cambridge University Press, New York, pp 208–327

    Chapter  Google Scholar 

  23. De Bruijn WC (1968) A modified Os04-(double) fixation procedure which selectively contrasts glycogen. 4th European Regional Conference on Electron Micros., ed Bocciarelli DS (Tipografia Polyglotta Vaticana), p 65

  24. Karnovsky MJ (1971) Use of ferrocyanide-reduced osmium tetroxide in electron microscopy. 11th Meeting Am Soc Cell Biol, p 146

  25. Webster P (2007) Microwave-assisted processing and embedding for transmission electron microscopy. Methods Mol Biol 369:47–65

    Article  CAS  PubMed  Google Scholar 

  26. Ichii O, Konno A, Sasaki N, Endoh D, Hashimoto Y, Kon Y (2008) Autoimmune glomerulonephritis induced in congenic mouse strain carrying telomeric region of chromosome 1 derived from MRL/MpJ. Histol Histopathol 23:411–422

    CAS  PubMed  Google Scholar 

  27. Eberle AL, Selchow O, Thaler M, Zeidler D, Kirmse R (2015) Mission (im)possible—mapping the brain becomes a reality. Microscopy (Oxf) 64:45–55

    Article  Google Scholar 

  28. Kreshuk A, Koethe U, Pax E, Bock DD, Hamprecht FA (2014) Automated detection of synapses in serial section transmission electron microscopy image stacks. PLoS One 9:e87351

    Article  PubMed  PubMed Central  Google Scholar 

  29. Kaynig V, Vazquez-Reina A, Knowles-Barley S, Roberts M, Jones TR, Kasthuri N, Miller E, Lichtman J, Pfister H (2015) Large-scale automatic reconstruction of neuronal processes from electron microscopy images. Med Image Anal 22:77–88

    Article  PubMed  PubMed Central  Google Scholar 

  30. Perez AJ, Seyedhosseini M, Deerinck TJ, Bushong EA, Panda S, Tasdizen T, Ellisman MH (2014) A workflow for the automatic segmentation of organelles in electron microscopy image stacks. Front Neuroanat 8:126

    Article  PubMed  PubMed Central  Google Scholar 

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Acknowledgments

This work was partly supported by JSPS KAKENHI Grant Number 25870281 (to SS) and 26860129 (to NO), Comprehensive Brain Science Network (CBSN) (to NO) and The Cooperative Study Programs of National Institute for Physiological Sciences (to NO and SS).

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Correspondence to Nobuhiko Ohno.

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Thai, T.Q., Nguyen, H.B., Saitoh, S. et al. Rapid specimen preparation to improve the throughput of electron microscopic volume imaging for three-dimensional analyses of subcellular ultrastructures with serial block-face scanning electron microscopy. Med Mol Morphol 49, 154–162 (2016). https://doi.org/10.1007/s00795-016-0134-7

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