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Complete nucleotide sequence of a novel monopartite begomovirus infecting Ageratum conyzoides in China

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Abstract

Two isolates of a novel monopartite begomovirus were obtained from naturally infected Ageratum conyzoides plants showing typical leaf curling and enation symptoms in Sichuan Province, China. The complete DNA sequences of two isolates were determined to be 2749 nucleotides in length. Sequence analysis showed that the two isolates shared 99.5% identity, and the highest identity (89.5–89.6%) was with the DNA sequence of tomato leaf curl Hainan virus (ToLCHaiV). No other begomoviruses or satellite molecules were detected in the two samples. Based on the species demarcation criterion for the genus Begomovirus established by the Geminiviridae Study Group, the virus is a novel monopartite begomovirus, and the tentative name “ageratum leaf curl Sichuan virus” (ALCScV) is proposed. Phylogenetic analysis showed that it clustered with ToLCHaiV, and recombination analysis showed that ALCScV might have arisen by recombination between viruses related to ToLCHaiV, ageratum leaf curl virus (ALCuV), and sida leaf curl virus (SiLCuV).

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References

  1. Altschul SF, Gish W, Miller W et al (1990) Basic local alignment search tool. J Mol Biol 215:403–410

    CAS  Google Scholar 

  2. Barreto SS, Hallwass M, Aquino OM, Inoue-Nagata AK (2013) A study of weeds as potential inoculum sources for a tomato-infecting begomovirus in Central Brazil. Phytopathology 103:436–444

    Article  CAS  Google Scholar 

  3. Briddon RW, Bull SE, Mansoor S et al (2002) Universal primers for the PCR-mediated amplification of DNA beta: a molecule associated with some monopartite begomoviruses. Mol Biotechnol 20:315–318

    Article  CAS  Google Scholar 

  4. Brown JK, Zerbini FM, Navas-Castillo J et al (2015) Revision of begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619

    Article  CAS  Google Scholar 

  5. Bull SE, Briddon RW, Markham PG (2003) Universal primers for the PCR-mediated amplification of DNA 1: a satellite-like molecule associated with begomovirus-DNA beta complexes. Mol Biotechnol 23:83–86

    Article  CAS  Google Scholar 

  6. Deng D, McGrath PF, Robinson DJ et al (2010) Detection and differentiation of whitefly-transmitted geminiviruses in plants and vector insects by the polymerase chain reaction with degenerate primers. Ann Appl Biol 125:327–336

    Article  Google Scholar 

  7. Fauquet CM, Briddon RW, Brown JK et al (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821

    Article  CAS  Google Scholar 

  8. Fiallo-Olivé E, Martínez-Zubiaur Y, Moriones E, Navas-Castillo J (2012) A novel class of DNA satellites associated with new world begomoviruses. Virology 426:1–6

    Article  Google Scholar 

  9. Fiallo-Olive E, Tovar R, Navas-Castillo J (2016) Deciphering the biology of deltasatellites from the new world: maintenance by new world begomoviruses and whitefly transmission. New Phytologist 212:680–692

    Article  CAS  Google Scholar 

  10. Fondong VN, Pita JS, Rey MEC et al (2000) Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon. J Gen Virol 81:287–297

    Article  CAS  Google Scholar 

  11. Hassan I, Orilio AF, Fiallo-Olive E, Briddon RW, Navas-Castillo J (2016) Infectivity, effects on helper viruses and whitefly transmission of the deltasatellites associated with sweepoviruses (genus Begomovirus, family Geminiviridae). Sci Rep 6:30204

    Article  CAS  Google Scholar 

  12. Huang JF, Zhou XP (2006) Molecular characterization of two distinct begomoviruses from Ageratum conyzoides and Malvastrum coromandelianum in China. J Phytopathol 154:648–653

    Article  CAS  Google Scholar 

  13. Jiang T, Zhou XP (2004) First report of malvastrum yellow vein virus infecting Ageratum conyzoides. Plant Pathol 53:799

    Article  Google Scholar 

  14. Kashina BD, Mabagala RB, Mpunami AA (2003) First report of Ageratum conyzoides L. and Sida acuta Burm F. as new weed hosts of tomato yellow leaf curl Tanzania virus. Plant Protection Sci 39:18–22

    Article  Google Scholar 

  15. Kumar Y, Hallan V, Zaidi AA (2011) First report of Ageratum enation virus infecting Crassocephalum crepidioides (Benth.) S. Moore and Ageratum conyzoides L. in India. J Gen Plant Pathol 77:214–216

    Article  CAS  Google Scholar 

  16. Liu Z, Yang CX, Jia SP, Zhang PC, Xie LY, Xie LH, Lin QY, Wu ZJ (2008) First report of ageratum yellow vein virus causing tobacco leaf curl disease in Fujian Province, China. Plant Dis 92:177

    Article  CAS  Google Scholar 

  17. Liu MH, Li MJ, Qi HH, Guo R, Liu XM, Wang Q, Cheng YQ (2013) Occurrence of grapevine leafroll-associated viruses in China. Plant Dis 97:1339–1345

    Article  Google Scholar 

  18. Lozano G, Trenado HP, Fiallo-Olive E, Chirinos D, Geraud-Pouey F, Briddon RW, Navas-Castillo J (2016) Characterization of non-coding DNA satellites associated with sweepoviruses (Genus Begomovirus, Geminiviridae)—definition of a distinct class of begomovirus-associated satellites. Front Microbiol 7:162

    Article  Google Scholar 

  19. Martin DP, Lemey P, Lott M et al (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463

    Article  CAS  Google Scholar 

  20. Muhire BM, Varsani A, Martin DP (2014) SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:8

    Article  Google Scholar 

  21. Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011) Emerging virus diseases transmitted by whiteflies. Annu Rev Phytopathol 49:219–248

    Article  CAS  Google Scholar 

  22. Ouattara A, Tiendrebeogo F, Lefeuvre P et al (2017) Tomato leaf curl Burkina Faso virus: a novel tomato-infecting monopartite begomovirus from Burkina Faso. Arch Virol 162:1427–1429

    Article  CAS  Google Scholar 

  23. Passos LS, Teixeira JWM, Teixeira K et al (2017) Two new begomoviruses that infect non-cultivated malvaceae in Brazil. Arch Virol 162:1795–1797

    Article  CAS  Google Scholar 

  24. Tamura K, Peterson D, Peterson N et al (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    Article  CAS  Google Scholar 

  25. Varsani A, Navas-Castillo J, Moriones E et al (2014) Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus. Arch Virol 159:2193–2203

    Article  CAS  Google Scholar 

  26. Varsani A, Roumagnac P, Fuchs M et al (2017) Capulavirus and Grablovirus: two new genera in the family Geminiviridae. Arch Virol 162:1819–1831

    Article  CAS  Google Scholar 

  27. Xie Y, Zhou XP, Li ZH et al (2002) Identification of a novel DNA molecule associated with tobacco leaf curl virus. Chin Sci Bull 47:1273–1276

    Article  CAS  Google Scholar 

  28. Zerbini FM, Briddon RW, Idris A et al (2017) ICTV virus taxonomy profile: geminiviridae. J Gen Virol 98:131–133

    Article  CAS  Google Scholar 

  29. Zhou XP (2013) Advances in understanding begomovirus satellites. In: Van Alfen NK (ed) Annual review of phytopathology, vol 51. Annual Reviews, Palo Alto, pp 357–381

    Google Scholar 

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Acknowledgements

This research work was supported by National Natural Science Founding of China (Grant no. 31772127) and the Fundamental Research Funds for the Central Universities (Grant no. XDJK2017A006).

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Correspondence to Ling Qing.

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Handling Editor: Elvira Fiallo-Olivé.

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Li, P., Jing, C., Wang, R. et al. Complete nucleotide sequence of a novel monopartite begomovirus infecting Ageratum conyzoides in China. Arch Virol 163, 3443–3446 (2018). https://doi.org/10.1007/s00705-018-4004-6

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  • DOI: https://doi.org/10.1007/s00705-018-4004-6

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