Abstract
While picornaviruses can cause diseases in many mammals, little is known of their host range for replication in non-mammalian vertebrates. Here, a picornavirus in liver and kidney tissues from diseased Sulawesi tortoises (Indotestudo forsteni) was genetically characterized. Tortoise rafivirus A (ToRaV-A, KJ415177) represents a potential new genus in the family Picornaviridae, for which we propose the name “Rafivirus”. Our finding confirms the susceptibility of reptiles to picornaviruses.
References
Farkas S, Ihász K, Fehér E, Bartha D, Jakab F, Gál J, Bányai K, Marschang R (2014) Sequencing and phylogenetic analysis identifies candidate members of a new picornavirus genus in terrestrial tortoise species. Arch Virol, 1–6
Fichtner D, Philipps A, Groth M, Schmidt-Posthaus H, Granzow H, Dauber M, Platzer M, Bergmann SM, Schrudde D, Sauerbrei A, Zell R (2013) Characterization of a novel picornavirus isolate from a diseased European eel (Anguilla anguilla). J Virol 87:10895–10899
Heldstab A, Bestetti G (1984) Virus associated gastrointestinal diseases in snakes. J Zoo Anim Med 15:118–128
Hellen CU, de Breyne S (2007) A distinct group of hepacivirus/pestivirus-like internal ribosomal entry sites in members of diverse picornavirus genera: evidence for modular exchange of functional noncoding RNA elements by recombination. J Virol 81:5850–5863
Heuser W, Kaleta E, Giesow K, Keil GM, Knowles NJ (2010) Genome sequence of virus “X”, a picornavirus isolated from a spur-thighed tortoise (Testudo graeca). In: EUROPIC 2010: XVI Meeting of the European Study Group on the Molecular Biology of Picornaviruses, St. Andrews, p 147
Heuser W, Pendl H, Knowles NJ, Keil G, Herbst W, Lierz M, Kaleta EF (2014) Soft plastron, soft carapace with skeletal abnormality in juvenile tortoises. Histopathology and isolation of a novel picornavirus from Testudo graeca and Geochelone elegans. Tieraerztliche Praxis (in press)
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755
Jarvis TC, Kirkegaard K (1992) Poliovirus RNA recombination: mechanistic studies in the absence of selection. EMBO J 11:3135–3145
Katoh K, K-i Kuma, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511–518
Knowles NJ, Hovi T, Hyypiä T, King AMQ, Lindberg M, Pallansch MA, Palmenberg AC, Simmonds P, Skern T, Stanway G, Yamashita T, Zell R (2012) Picornaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 855–880
Koonin EV, Wolf YI, Nagasaki K, Dolja VV (2008) The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups. Nat Rev Microbiol 6:925–939
Lange J, Groth M, Fichtner D, Granzow H, Keller B, Walther M, Platzer M, Sauerbrei A, Zell R (2014) Virus isolate from carp: genetic characterization reveals a novel picornavirus with two aphthovirus 2A-like sequences. J Gen Virol 95:80–90
Lewis-Rogers N, Crandall KA (2010) Evolution of Picornaviridae: an examination of phylogenetic relationships and cophylogeny. Mol Phylogenet Evol 54:995–1005
Marschang RE (2011) Viruses infecting reptiles. Viruses 3:2087–2126
Muhire B, Martin DP, Brown JK, Navas-Castillo J, Moriones E, Zerbini FM, Rivera-Bustamante R, Malathi VG, Briddon RW, Varsani A (2013) A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol 158:1411–1424
Ng TF, Marine R, Wang C, Simmonds P, Kapusinszky B, Bodhidatta L, Oderinde BS, Wommack KE, Delwart E (2012) High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage. J Virol 86:12161–12175
Ng TF, Driscoll C, Carlos MP, Prioleau A, Schmieder R, Dwivedi B, Wong J, Cha Y, Head S, Breitbart M, Delwart E (2013) Distinct lineage of vesiculovirus from big brown bats, United States. Emerg Infect Dis 19:1978–1980
Ng TF, Kondov NO, Hayashimoto N, Uchida R, Cha Y, Beyer AI, Wong W, Pesavento PA, Suemizu H, Muench MO, Delwart E (2013) Identification of an astrovirus commonly infecting laboratory mice in the US and Japan. PLoS ONE 8:e66937
Ng TF, Mesquita JR, Nascimento MSJ, Kondov NO, Wong W, Reuter G, Knowles NJ, Vega E, Esona MD, Deng X, Vinjé J, Delwart E (2014) Feline fecal virome reveals novel and prevalent enteric viruses. Veterinary Microbiol 171:102–111
Phelps NB, Mor SK, Armien AG, Batts W, Goodwin AE, Hopper L, McCann R, Ng TF, Puzach C, Waltzek TB, Delwart E, Winton J, Goyal SM (2014) Isolation and molecular characterization of a novel picornavirus from baitfish in the USA. PLoS ONE 9:e87593
Reuter G, Boldizsár A, Pankovics P (2009) Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch Virol 154:101–108
Rivera S, Wellehan JFX, McManamon R, Innis CJ, Garner MM, Raphael BL, Gregory CR, Latimer KS, Rodriguez CE, Diaz-Figueroa O, Marlar AB, Nyaoke A, Gates AE, Gilbert K, Childress AL, Risatti GR, Frasca S (2009) Systemic adenovirus infection in Sulawesi tortoises (Indotestudo forsteni) caused by a novel siadenovirus. J Veterinary Diagn Investig 21:415–426
Schumacher VL, Innis CJ, Garner MM, Risatti GR, Nordhausen RW, Gilbert-Marcheterre K, Wellehan JFX, Childress AL, Frasca S (2012) Sulawesi tortoise adenovirus-1 in two impressed tortoises (Manouria impressa) and a Burmese star tortoise (Geochelone platynota). J Zoo Wildl Med 43:501–510
Sinha A, SenGupta S, Guin S, Dutta S, Ghosh S, Mukherjee P, Mukhopadhyay AK, Ramamurthy T, Takeda Y, Kurakawa T, Nomoto K, Nair GB, Nandy RK (2013) Culture-independent real-time PCR reveals extensive polymicrobial infections in hospitalized diarrhoea cases in Kolkata, India. Clin Microbiol Infect 19:173–180
Werneburg I, Sánchez-Villagra MR (2009) Timing of organogenesis support basal position of turtles in the amniote tree of life. BMC Evol Biol. doi:10.1186/1471-2148-9-82
Acknowledgments
This work was supported by NHLBI grant R01 HL105770 to E.L.D and the Blood Systems Research Institute and grants from the Hungarian Scientific Research Fund (OTKA K83013 and OTKA K111615).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Ng, T.F.F., Wellehan, J.F.X., Coleman, J.K. et al. A tortoise-infecting picornavirus expands the host range of the family Picornaviridae . Arch Virol 160, 1319–1323 (2015). https://doi.org/10.1007/s00705-015-2366-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00705-015-2366-6