Abstract
Recently, a novel group of unclassified single-stranded (ss) circular small DNA viruses (called stool-associated circular virus; SCV) were identified in fecal samples of three mammalian species, namely, chimpanzee (ChiSCV), pig (PoSCV) and cattle (BoSCV). In this study, a novel genomic relative of stool-associated circular virus (TuSCV, KF880727) was detected in faeces of an avian species, namely, domestic turkey (Meleagris gallopavo). The complete TuSCV genome is 2479 nt long and has two open reading frames (ORF), which are bidirectionally transcribed and separated by intergenic regions. The ORF1 (replicase) and ORF2 (capsid) proteins have 77 % and 48 % aa sequence identity to different porcine-origin SCVs.
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Blinkova O, Victoria J, Li Y, Keele BF, Sanz C, Ndjango JB, Peeters M, Travis D, Lonsdorf EV, Wilson ML, Pusey AE, Hahn BH, Delwart EL (2010) Novel circular DNA viruses in stool samples of wild-living chimpanzees. J Gen Virol 91:74–86
Boros Á, Nemes C, Pankovics P, Kapusinszky B, Delwart E, Reuter G (2013) Genetic characterization of a novel picornavirus in turkeys (Meleagris gallopavo) distinct from turkey galliviruses and megriviruses and distantly related to the members of the genus Avihepatovirus. J Gen Virol 94:1496–1509
Cheung AK, Ng TF, Lager KM, Bayles DO, Alt DP, Delwart EL, Pogranichniy RM, Kehrli ME (2013) A divergent clade of circular single-stranded DNA viruses from pig feces. Arch Virol 158:2157–2162
Ilyina TV, Koonin EV (1992) Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eukaryotes and archaebacteria. Nucleic Acids Res 20:3279–3285
Kapoor A, Victoria J, Simmonds P, Slikas E, Chieochansin T, Naeem A, Shaukat S, Sharif S, Alam MM, Angez M, Wang C, Shafer RW, Zaidi S, Delwart E (2008) A highly prevalent and genetically diversified Picornaviridae genus in South Asian children. Proc Natl Acad Sci USA 105:20482–20487
Kim HK, Park SJ, Nguyen VG, Song DS, Moon JH, Kang BK, Park BK (2012) Identification of a novel single-stranded, circular DNA virus form bovine stool. J Gen Virol 93:635–639
Koonin EV, Ilyina TV (1992) Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins. J Gen Virol 73:2736–2766
Sachsenröder J, Twardziok S, Hammerl JA, Janczyk P, Wrede P, Hertwig S, Johne R (2012) Simultaneous identification of DNA and RNA viruses present in pig faeces using process-controlled deep sequencing. PLoS One 7:e34631
Sikorski A, Agüello-Astorga GR, Dayaram A, Dobson RCJ, Varsani A (2001) Discovery of a novel circular single-stranded DNA virus from porcine faeces. Arch Virol 158:283–289
Steinfeldt T, Finsterbusch T, Mankertz A (2001) Rep and Rep’ protein of porcine circovirus type 1 bind to the origin of replication in vitro. Virology 291:152–160
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
Victoria JG, Kapoor A, Li L, Blinkova O, Slikas B, Wang C, Naeem A, Zaidi S, Delwart E (2009) Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol 83:4642–4651
Acknowledgments
This work was supported by Grants from the Hungarian Scientific Research Fund (OTKA, K83013 and OTKA, K111615) and NHLBI grant R01-HL105770. This research was supported by the European Union and the State of Hungary, co-financed by the European Social Fund in the framework of TÁMOP 4.2.4. A/2-11-1-2012-0001 ‘National Excellence Program’. We thank Valter Polczer for his help in sample collecting.
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Reuter, G., Boros, Á., Delwart, E. et al. Novel circular single-stranded DNA virus from turkey faeces. Arch Virol 159, 2161–2164 (2014). https://doi.org/10.1007/s00705-014-2025-3
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DOI: https://doi.org/10.1007/s00705-014-2025-3