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Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China

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Summary

The complete genome of spring viraemia of carp virus (SVCV) strain A-1 isolated from cultured common carp (Cyprinus carpio) in China was sequenced and characterized. Reverse transcription-polymerase chain reaction (RT-PCR) derived clones were constructed and the DNA was sequenced. It showed that the entire genome of SVCV A-1 consists of 11,100 nucleotide base pairs, the predicted size of the viral RNA of rhabdoviruses. However, the additional insertions in bp 4633–4676 and bp 4684–4724 of SVCV A-1 were different from the other two published SVCV complete genomes. Five open reading frames (ORFs) of SVCV A-1 were identified and further confirmed by RT-PCR and DNA sequencing of their respective RT-PCR products. The 5 structural proteins encoded by the viral RNA were ordered 3′-N-P-M-G-L-5′. This is the first report of a complete genome sequence of SVCV isolated from cultured carp in China. Phylogenetic analysis indicates that SVCV A-1 is closely related to the members of the genus Vesiculovirus, family Rhabdoviridae.

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Authors and Affiliations

  1. State Key Laboratory of Biocontrol, College of Life Sciences, Sun Yat-sen University, Guangzhou, P.R. China

    Y. Teng & Q. W. Qin

  2. The Key Laboratory of Aquatic Animal Diseases, Shenzhen Exit & Entry Inspection and Quarantine Bureau, Shenzhen, P.R. China

    H. Liu, J. Q. Lv & W. H. Fan

  3. State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, P.R. China

    H. Liu & Q. Y. Zhang

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  1. Y. Teng
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  2. H. Liu
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  3. J. Q. Lv
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  4. W. H. Fan
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  5. Q. Y. Zhang
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  6. Q. W. Qin
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First two authors contributed equally to this work.

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Teng, Y., Liu, H., Lv, J. et al. Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China. Arch Virol 152, 1457–1465 (2007). https://doi.org/10.1007/s00705-007-0971-8

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  • DOI: https://doi.org/10.1007/s00705-007-0971-8

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