Summary
An isolate of banana streak virus (BSV) that does not also occur as an integrant in the Musa balbisiana genome was sought in order to investigate the biological role of BSV in the evolution of either the Musa genome or of the virus itself. We isolated BSV virions from a Musa acuminata siamea accession from Vietnam and sequenced the entire viral genome. The molecular organization is similar to that described for other BSV but slightly larger (7801 bp vs. 1611–7568 bp), and ORF I has a non-conventional start codon. This genome was sufficiently different to propose it as a member of a distinct species named Banana streak virus strain acuminata Vietnam (BSAcVNV).
References
Y Ahlawat R Pant B Lockhart M Srivastav N Chakraborty A Varma (1996) ArticleTitleAssociation of Badnavirus with Citrus mosaic disease in India Plant Dis 80 590–592 Occurrence Handle10.1094/PD-80-0590
F Bakry (2001) ArticleTitleBanana genetic diversity and perspectives for breeding. New varieties: why and how? C R Acad Agric Fr 87 129–141
R Boeck D Kolakofsky (1994) ArticleTitlePositions +5 and +6 can be major determinants of the efficiency of non-AUG initiation codons for protein synthesis EMBO J 13 3608–3617 Occurrence Handle8062835 Occurrence Handle1:CAS:528:DyaK2cXlslaisLc%3D
S Dallot P Acuña C Rivera P Ramirez F Côte BEL Lockhart M-L Caruana (2001) ArticleTitleEvidence that the proliferation stage of micropropagation procedure is determinant in the expression of Banana streak virus integrated into the genome of the FHIA 21 hybrid (Musa AAAB) Arch Virol 146 2179–2190 Occurrence Handle11765919 Occurrence Handle10.1007/s007050170028 Occurrence Handle1:CAS:528:DC%2BD38XovFWl
J Futterer I Potrykus Y Bao L Li T Burns R Hull T Hohn (1996) ArticleTitlePosition-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation J Virol 70 2999–3010 Occurrence Handle8627776 Occurrence Handle1:STN:280:DyaK287os1OhtQ%3D%3D
A Geering L McMichael R Dietzgen J Thomas (2000) ArticleTitleGenetic diversity among Banana streak virus isolates from Australia Phytopathology 90 921–927 Occurrence Handle10.1094/PHYTO.2000.90.8.921 Occurrence Handle1:CAS:528:DC%2BD3cXmtFKjtrw%3D Occurrence Handle18944515
Geering A, Parry J, Zhang L, Olszewsk IN, Lockhart B, Thomas J (2000) Is banana streak virus strain Onne the only activateable virus integrant in the Musa genome? In: 2nd International Symposium on the Molecular and Cellular Biology of Banana. Byron Bay Australia, INIBAP
A Geering N Olszewski G Harper B Lockhart R Hull J Thomas (2005) ArticleTitleBanana contains a diverse array of endogenous badnaviruses J Gen Virol 86 511–520 Occurrence Handle15659772 Occurrence Handle10.1099/vir.0.80261-0 Occurrence Handle1:CAS:528:DC%2BD2MXhtFeqs78%3D
A Geering M Pooggin N Olszewski B Lockhart J Thomas (2005) ArticleTitleCharacterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa Arch Virol 150 787–796 Occurrence Handle15785970 Occurrence Handle10.1007/s00705-004-0471-z Occurrence Handle1:CAS:528:DC%2BD2MXisV2hsbc%3D
W Gregor MF Mette C Staginnus MA Matzke AJM Matzke (2004) ArticleTitleA distinct endogenous pararetrovirus family in Nicotiana tomentosiformis, a diploid progenitor of polyploid tobacco Plant Physiol 134 1191–1199 Occurrence Handle14988473 Occurrence Handle10.1104/pp.103.031112 Occurrence Handle1:CAS:528:DC%2BD2cXis1SjtLc%3D
S Grunert R Jackson (1994) ArticleTitleThe immediate downstream codon strongly influences the efficiency of utilization of eukaryotic translation initiation codons EMBO J 13 3618–3630 Occurrence Handle8062836 Occurrence Handle1:STN:280:DyaK2czktFaktw%3D%3D
G Harper R Hull (1998) ArticleTitleCloning and sequence analysis of banana streak virus DNA Virus Genes v 271–278 Occurrence Handle10.1023/A:1008021921849
G Harper JO Osuji P Heslop-Harrison R Hull G Harper B Lockhart (1999) ArticleTitleIntegration of Banana streak badnavirus into the Musa genome: molecular evidence Virology 255 207–213 Occurrence Handle10069945 Occurrence Handle10.1006/viro.1998.9581 Occurrence Handle1:CAS:528:DyaK1MXhsFGlt70%3D
R Hull (1999) ArticleTitleClassification of reverse transcribing elements: a discussion document Arch Virol 144 209–213 Occurrence Handle10076522 Occurrence Handle10.1007/s007050050498 Occurrence Handle1:CAS:528:DyaK1MXhsFSmsL4%3D
M-L Iskra-Caruana F Lheureux P-Y Teycheney (2003) ArticleTitleLes pararetrovirus endogènes (EPRV), voie nouvelle de transmission des virus de plantes Virologie 7 255–265
S Krawczyk C Thurow R Niggeweg C Gatz (2002) ArticleTitleAnalysis of the spacing between the two palindromes of activation sequence-1 with respect to binding to different TGA factors and transcriptional activation potential Nucleic Acids Res 30 775–781 Occurrence Handle11809891 Occurrence Handle10.1093/nar/30.3.775 Occurrence Handle1:CAS:528:DC%2BD38XhsVyhtLg%3D
M Kunii M Kanda H Nagano I Uyeda Y Kishima Y Sano (2004) ArticleTitleReconstruction of putative DNA virus from endogenous Rice tungro bacilliform virus-like sequences in the rice genome: implications for integration and evolution BMC Genomics 5 80 Occurrence Handle15488154 Occurrence Handle10.1186/1471-2164-5-80 Occurrence Handle1:CAS:528:DC%2BD2cXhtVegtbrE
F Lheureux F Carreel C Jenny BEL Lockhart M-L Iskraaruana (2003) ArticleTitleIdentification of genetic markers linked to Banana streak disease expression in inter-specific Musa hybrids Theor Appl Genet 106 594–598 Occurrence Handle12595986 Occurrence Handle1:CAS:528:DC%2BD3sXhsVSmu7c%3D
B Lockhart (1990) ArticleTitleEvidence for a double-stranded circular DNA Genome in a second Group of plant Viruses Phytopathology 80 127–131 Occurrence Handle1:CAS:528:DyaK3cXkvFCntrs%3D
Lockhart B, Olszewski N (1993) Serological and genomic heterogeneity of banana streak badnavirus: implication for virus detection in Musa germplasm. In: Breeding Banana and plantain for resistance to disease and pest. INIBAP, Montpellier, France, pp 105–113
B Lockhart (1995) ArticleTitleBanana streak badnavirus infection in Musa: epidemiology, diagnosis and control. ASPAC Food and fertilizer technology center (Taiwan) Techn Bull 143 1–11
B Lockhart DR Jones (2000) Banan streak DR Jones (Eds) Disease of banana, abaca and ensete CABI Wallingford 263–274
H Lu M Reach E Minaya C Young (1997) ArticleTitleThe initiator element of the adenovirus major late promoter has an important role in transcription initiation in vivo J Virol 71 102–109 Occurrence Handle8985328 Occurrence Handle1:CAS:528:DyaK28XnsF2hs70%3D
L Medberry B Lockhart N Olszewski (1992) ArticleTitleThe Commelina yellow mottle virus promoter is a strong promoter in vascular and reproductive tissues Plant Cell 4 185–192 Occurrence Handle1633493 Occurrence Handle10.1105/tpc.4.2.185 Occurrence Handle1:CAS:528:DyaK38XksVWmt7g%3D
E Muller S Sackey (2005) ArticleTitleMolecular variability analysis of five new complete Cacao swollen shoot virus genomic sequences Arch Virol 150 53–66 Occurrence Handle15338327 Occurrence Handle10.1007/s00705-004-0394-8 Occurrence Handle1:CAS:528:DC%2BD2MXksVKjsw%3D%3D
T Ndowora B Lockhart N Olszewski (1997) ArticleTitleRelationship between integrated and episomal genomic sequences in Musa Virologie 87 S69
T Ndowora G Dahal D LaFleur G Harper R Hull N Olzsewski BEL Lockhart (1999) ArticleTitleEvidence that badnavirus infection in Musa can originate from integrated pararetroviral sequences Virology 255 214–220 Occurrence Handle10069946 Occurrence Handle10.1006/viro.1998.9582 Occurrence Handle1:CAS:528:DyaK1MXhsFGlt7o%3D
Perrier X, Flori A, Bonnot FI (2003) Data analysis methods. In: Genetic diversity of cultivated tropical plants. CIRAD, Montpellier, pp 43–76
M Pooggin J Futterer K Skryabin T Hohn (1999) ArticleTitleA short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetroviruses J Gen Virol 80 2217–2228 Occurrence Handle10466822 Occurrence Handle1:CAS:528:DyaK1MXlt1ejsrs%3D
K Richert-Poggeler F Noreen T Schwarzacher GTH Harper (2003) ArticleTitleInduction of infectious petunia vein clearing (pararetro) virus from endogenous provirus in petunia EMBO J 22 4836–4845 Occurrence Handle12970195 Occurrence Handle10.1093/emboj/cdg443
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Lheureux, F., Laboureau, N., Muller, E. et al. Molecular characterization of banana streak acuminata Vietnam virus isolated from Musa acuminata siamea (banana cultivar). Arch Virol 152, 1409–1416 (2007). https://doi.org/10.1007/s00705-007-0946-9
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DOI: https://doi.org/10.1007/s00705-007-0946-9