Skip to main content

Advertisement

Log in

Inhibition of hepatitis C virus replication and expression by small interfering RNA targeting host cellular genes

  • Published:
Archives of Virology Aims and scope Submit manuscript

Summary.

Small interfering RNA (siRNA) is a powerful tool for functional genomics and gene therapy. Viral replication and gene expression are strongly inhibited by siRNA treatment of infected mammalian cells. However, the high sequence specificity of siRNAs, combined with prolonged treatment, promote the emergence of siRNA-resistant virus variants, especially among viruses that encode a polymerase lacking proofreading capabilities, indicating that the antiviral properties of specific siRNAs are not as effective as expected. To investigate the silencing effect of siRNAs against selected host cellular proteins that promote replication of hepatitis C virus (HCV), several siRNAs against human VAMP-associated protein (hVAP-A), La antigen and polypyrimidine-tract-binding protein (PTB) were evaluated. The data show that several siRNAs markedly decreased the expression levels of corresponding cellular genes that inhibited HCV replication in Huh-7 cells. These treatments were also shown to have no impact upon cell viability. These findings provide an alternative approach for blocking HCV replication. Hence, combination therapies with siRNAs against both the virus and host genes that support virus replication are likely to be a potent approach in the treatment of chronic hepatitis C.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • ZN Adelman I Sanchez-Vargas EA Travanty JO Carlson BJ Beaty CD Blair KE Olson (2002) ArticleTitleRNA silencing of dengue virus type 2 replication in transformed C6/36 mosquito cells transcribing an inverted-repeat RNA derived from the virus genome J Virol 76 12925–12933 10.1128/JVI.76.24.12925-12933.2002 Occurrence Handle10.1128/JVI.76.24.12925-12933.2002 Occurrence Handle1:CAS:528:DC%2BD38XptVyns74%3D Occurrence Handle12438618

    Article  CAS  PubMed  Google Scholar 

  • H Aizaki KS Choi M Liu YJ Li MM Lai (2006) ArticleTitlePolypyrimidine-tract-binding protein is component of the HCV RNA replication complex and necessary for RNA synthesis J Biomed Sci 13 469–480 10.1007/s11373-006-9088-4 Occurrence Handle10.1007/s11373-006-9088-4 Occurrence Handle1:CAS:528:DC%2BD28XpsVCisLk%3D Occurrence Handle16691359

    Article  CAS  PubMed  Google Scholar 

  • N Ali A Siddiqui (1995) ArticleTitleInteraction of polypyrimidine tract-binding protein with the 5′ noncoding region of the hepatitis C virus RNA genome and its functional requirement in internal initiation of translation J Virol 69 6367–6375 Occurrence Handle1:CAS:528:DyaK2MXotFamur4%3D Occurrence Handle7666538

    CAS  PubMed  Google Scholar 

  • N Ali A Siddiqui (1997) ArticleTitleThe La antigen binds 5′ noncoding region of the hepatitis C virus RNA in the context of the initiator AUG codon and stimulates internal ribosome entry site-mediated translation Proc Natl Acad Sci USA 94 2249–2254 10.1073/pnas.94.6.2249 Occurrence Handle10.1073/pnas.94.6.2249 Occurrence Handle1:CAS:528:DyaK2sXhvF2ltb4%3D Occurrence Handle9122180

    Article  CAS  PubMed  Google Scholar 

  • N Ali GJ Pruijn DJ Kenan JD Keene A Siddiqui (2000) ArticleTitleHuman La antigen is required for the hepatitis C virus internal ribosome entry site-mediated translation J Biol Chem 275 27531–27540 Occurrence Handle1:CAS:528:DC%2BD3cXmsVKltb4%3D Occurrence Handle10856291

    CAS  PubMed  Google Scholar 

  • A Anwar N Ali R Tanveer A Siddiqui (2000) ArticleTitleDemonstration of functional requirement of polypyrimidine tract-binding protein by SELEX RNA during hepatitis C virus internal ribosome entry site-mediated translation initiation J Biol Chem 275 34231–34235 10.1074/jbc.M006343200 Occurrence Handle10.1074/jbc.M006343200 Occurrence Handle1:CAS:528:DC%2BD3cXotFWlsrY%3D Occurrence Handle10938288

    Article  CAS  PubMed  Google Scholar 

  • V Bitko S Barik (2001) ArticleTitlePhenotypic silencing of cytoplasmic genes using sequence-specific double-stranded short interfering RNA and its application in the reverse genetics of wild type negative-strand RNA viruses BMC Microbiol 1 34 10.1186/1471-2180-1-34 Occurrence Handle10.1186/1471-2180-1-34 Occurrence Handle1:STN:280:DC%2BD38votF2rtA%3D%3D Occurrence Handle11801185

    Article  CAS  PubMed  Google Scholar 

  • KJ Blight JA McKeating CM Rice (2002) ArticleTitleHighly permissive cell lines for subgenomic and genomic hepatitis C virus RNA replication J Virol 76 13001–13014 10.1128/JVI.76.24.13001-13014.2002 Occurrence Handle10.1128/JVI.76.24.13001-13014.2002 Occurrence Handle1:CAS:528:DC%2BD38XptVyns7Y%3D Occurrence Handle12438626

    Article  CAS  PubMed  Google Scholar 

  • QL Choo G Kuo AJ Weiner LR Overby DW Bradley M Houghton (1989) ArticleTitleIsolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome Science 244 359–362 10.1126/science.2523562 Occurrence Handle10.1126/science.2523562 Occurrence Handle1:CAS:528:DyaL1MXit1Khtrk%3D Occurrence Handle2523562

    Article  CAS  PubMed  Google Scholar 

  • RT Chung LM Kaplan (1999) ArticleTitleHeterogeneous nuclear ribonucleoprotein I (hnRNP-I/PTB) selectively binds the conserved 3′ terminus of hepatitis C viral RNA Biochem Biophys Res Commun 254 351–362 10.1006/bbrc.1998.9949 Occurrence Handle10.1006/bbrc.1998.9949 Occurrence Handle1:CAS:528:DyaK1MXmslaktQ%3D%3D Occurrence Handle9918842

    Article  CAS  PubMed  Google Scholar 

  • L Gao H Aizaki JW He MM Lai (2004) ArticleTitleInteractions between viral nonstructural proteins and host protein hVAP-33 mediate the formation of hepatitis C virus RNA replication complex on lipid raft J Virol 78 3480–3488 10.1128/JVI.78.7.3480-3488.2004 Occurrence Handle10.1128/JVI.78.7.3480-3488.2004 Occurrence Handle1:CAS:528:DC%2BD2cXis1Kltb8%3D Occurrence Handle15016871

    Article  CAS  PubMed  Google Scholar 

  • L Gitlin S Karelsky R Andino (2002) ArticleTitleShort interfering RNA confers intracellular antiviral immunity in human cells Nature 418 430–434 10.1038/nature00873 Occurrence Handle10.1038/nature00873 Occurrence Handle1:CAS:528:DC%2BD38XlsFajsb8%3D Occurrence Handle12087357

    Article  CAS  PubMed  Google Scholar 

  • PC Haasnoot D Cupac B Berkhout (2003) ArticleTitleInhibition of virus replication by RNA interference J Biomed Sci 10 607–616 Occurrence Handle10.1007/BF02256311 Occurrence Handle14576463

    Article  PubMed  Google Scholar 

  • GJ Hannon (2003) RNAi: a guide to gene silencing Cold Spring Harbor Laboratory Press New York

    Google Scholar 

  • JM Jacque K Triques M Stevenson (2002) ArticleTitleModulation of HIV-1 replication by RNA interference Nature 418 435–438 10.1038/nature00896 Occurrence Handle10.1038/nature00896 Occurrence Handle1:CAS:528:DC%2BD38XlsFajtrk%3D Occurrence Handle12087358

    Article  CAS  PubMed  Google Scholar 

  • A Kaminski SL Hunt JG Patton RJ Jackson (1995) ArticleTitleDirect evidence that polypyrimidine tract binding protein (PTB) is essential for internal initiation of translation of encephalomyocarditis virus RNA RNA 1 924–938 Occurrence Handle1:CAS:528:DyaK28XisVShuw%3D%3D Occurrence Handle8548657

    CAS  PubMed  Google Scholar 

  • M Korf D Jarczak C Beger MP Manns M Kruger (2005) ArticleTitleInhibition of hepatitis C virus translation and subgenomic replication by siRNAs directed against highly conserved HCV sequence and cellular HCV cofactors J Hepatol 43 225–234 10.1016/j.jhep.2005.02.046 Occurrence Handle10.1016/j.jhep.2005.02.046 Occurrence Handle1:CAS:528:DC%2BD2MXlvFals7w%3D Occurrence Handle15964661

    Article  CAS  PubMed  Google Scholar 

  • D Lavillette AW Tarr C Voisset P Donot B Bartosch C Bain AH Patel J Dubuisson JK Ball FL Cosset (2005) ArticleTitleCharacterization of host-range and cell entry properties of the major genotypes and subtypes of hepatitis C virus Hepatology 41 265–274 10.1002/hep.20542 Occurrence Handle10.1002/hep.20542 Occurrence Handle15660396

    Article  PubMed  Google Scholar 

  • V Lohmann F Korner J Koch U Herian L Theilmann R Bartenschlager (1999) ArticleTitleReplication of subgenomic hepatitis C virus RNAs in a hepatoma cell line Science 285 110–113 10.1126/science.285.5424.110 Occurrence Handle10.1126/science.285.5424.110 Occurrence Handle1:CAS:528:DyaK1MXksVCqurk%3D Occurrence Handle10390360

    Article  CAS  PubMed  Google Scholar 

  • J McLauchlan (2000) ArticleTitleProperties of the hepatitis C virus core protein: a structural protein that modulates cellular processes J Viral Hepat 7 2–14 10.1046/j.1365-2893.2000.00201.x Occurrence Handle10.1046/j.1365-2893.2000.00201.x Occurrence Handle1:STN:280:DC%2BD3c7osVSnsg%3D%3D Occurrence Handle10718937

    Article  CAS  PubMed  Google Scholar 

  • Y Naito T Yamada K Ui-Tei S Morishita K Saigo (2004) ArticleTitlesiDirect: highly effective, target-specific siRNA design software for mammalian RNA interference Nucleic Acids Res 32 W124–W129 10.1093/nar/gkh442 Occurrence Handle10.1093/nar/gkh442 Occurrence Handle1:CAS:528:DC%2BD2cXlvFKnsb4%3D Occurrence Handle15215364

    Article  CAS  PubMed  Google Scholar 

  • G Randall CM Rice (2004) ArticleTitleInterfering with hepatitis C virus RNA replication Virus Res 102 19–25 10.1016/j.virusres.2004.01.011 Occurrence Handle10.1016/j.virusres.2004.01.011 Occurrence Handle1:CAS:528:DC%2BD2cXivVKmt70%3D Occurrence Handle15068876

    Article  CAS  PubMed  Google Scholar 

  • I Saito T Miyamura A Ohbayashi H Harada T Katayama S Kikuchi Y Watanabe S Koi M Onji Y Ohta QL Choo M Houghton G Kuo (1990) ArticleTitleHepatitis C virus infection is associated with the development of hepatocellular carcinoma Proc Natl Acad Sci USA 87 6547–6549 10.1073/pnas.87.17.6547 Occurrence Handle10.1073/pnas.87.17.6547 Occurrence Handle1:CAS:528:DyaK3cXls12lt78%3D Occurrence Handle2168552

    Article  CAS  PubMed  Google Scholar 

  • TL Tellinghuisen CM Rice (2002) ArticleTitleInteraction between hepatitis C virus proteins and host cell factors Curr Opin Microbiol 5 419–427 10.1016/S1369-5274(02)00341-7 Occurrence Handle10.1016/S1369-5274(02)00341-7 Occurrence Handle1:CAS:528:DC%2BD38XlvVequ78%3D Occurrence Handle12160863

    Article  CAS  PubMed  Google Scholar 

  • H Tu L Gao ST Shi DR Taylor T Yang AK Mircheff Y Wen AE Gorbalenya SB Hwang MM Lai (1999) ArticleTitleHepatitis C virus RNA polymerase and NS5A complex with a SNARE-like protein Virology 263 30–41 10.1006/viro.1999.9893 Occurrence Handle10.1006/viro.1999.9893 Occurrence Handle1:CAS:528:DyaK1MXmvFOmtro%3D Occurrence Handle10544080

    Article  CAS  PubMed  Google Scholar 

  • J Vieira J Messing (1991) ArticleTitleNew pUC-derived cloning vectors with different selectable markers and DNA replication origins Gene 100 189–194 10.1016/0378-1119(91)90365-I Occurrence Handle10.1016/0378-1119(91)90365-I Occurrence Handle1:CAS:528:DyaK38Xhs1Gg Occurrence Handle1905257

    Article  CAS  PubMed  Google Scholar 

  • J Zhang G Randall A Higginbottom P Monk CM Rice JA McKeating (2004) ArticleTitleCD81 is required for hepatitis C virus glycoprotein-mediated viral infection J Virol 78 1448–1455 10.1128/JVI.78.3.1448-1455.2004 Occurrence Handle10.1128/JVI.78.3.1448-1455.2004 Occurrence Handle1:CAS:528:DC%2BD2cXmsFWjtQ%3D%3D Occurrence Handle14722300

    Article  CAS  PubMed  Google Scholar 

  • J Zhang O Yamada T Sakamoto H Yoshida T Iwai Y Matsushita H Shimamura H Araki K Shimotohno (2004) ArticleTitleDown-regulation of viral replication by adenoviral-mediated expression of siRNA against cellular cofactors for hepatitis C virus Virology 320 135–143 10.1016/j.virol.2003.11.023 Occurrence Handle10.1016/j.virol.2003.11.023 Occurrence Handle1:CAS:528:DC%2BD2cXhvVOqsL0%3D Occurrence Handle15003869

    Article  CAS  PubMed  Google Scholar 

  • Zhao P, Ke S, Wang HW, Qian F, Qi ZT (2003) Enhancement by an in vivo-activated promoter of immunogenicity of recombinant attenuated Salmonella typhimurium expressing hepatitis C virus core antigen. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai) 35: 266-70

Download references

Author information

Authors and Affiliations

Authors

Additional information

First and second authors contributed equally to this work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Xue, Q., Ding, H., Liu, M. et al. Inhibition of hepatitis C virus replication and expression by small interfering RNA targeting host cellular genes. Arch Virol 152, 955–962 (2007). https://doi.org/10.1007/s00705-006-0905-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-006-0905-x

Keywords

Navigation