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Impact of Hardy–Weinberg disequilibrium on post-imputation quality control

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References

  • Howie BN, Donnelly P, Marchini J (2009) A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet 5:e1000529

    Article  PubMed  Google Scholar 

  • Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol 34:816–834

    Article  PubMed  Google Scholar 

  • Marchini J, Howie B (2010) Genotype imputation for genome-wide association studies. Nat Rev Genet 11:499–511

    Article  PubMed  CAS  Google Scholar 

  • Shriner D (2011) Approximate and exact tests of Hardy–Weinberg equilibrium using uncertain genotypes. Genet Epidemiol 35:632–637

    Article  PubMed  Google Scholar 

  • Shriner D, Adeyemo A, Gerry NP, Herbert A, Chen G, Doumatey A, Huang H, Zhou J, Christman MF, Rotimi CN (2009) Transferability and fine-mapping of genome-wide associated loci for adult height across human populations. PLoS ONE 4:e8398

    Article  PubMed  Google Scholar 

  • The 1000 Genomes Project Consortium (2012) An integrated map of genetic variation from 1,092 human genomes. Nature 491:56–65

    Google Scholar 

Download references

Acknowledgments

The contents of this publication are solely the responsibility of the author and do not necessarily represent the official view of the National Institutes of Health. The Howard University Family Study was supported by National Institutes of Health grants S06GM008016-320107 to Charles N. Rotimi and S06GM008016-380111 to Adebowale Adeyemo. Participant enrollment was carried out at the Howard University General Clinical Research Center, supported by National Institutes of Health grant 2M01RR010284. Genotyping support was provided by the Coriell Institute for Medical Research. This research was supported by the Intramural Research Program of the Center for Research on Genomics and Global Health (CRGGH). The CRGGH is supported by the National Human Genome Research Institute, the National Institute of Diabetes and Digestive and Kidney Diseases, the Center for Information Technology, and the Office of the Director at the National Institutes of Health (Z01HG200362). I thank Adebowale Adeyemo and two anonymous reviewers for their helpful comments.

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The author declares no conflicts of interest.

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Ethics approval for the Howard University Family Study was obtained from the Howard University Institutional Review Board and written informed consent was obtained from each participant. All clinical investigation was conducted according to the principles expressed in the Declaration of Helsinki.

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Correspondence to Daniel Shriner.

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Shriner, D. Impact of Hardy–Weinberg disequilibrium on post-imputation quality control. Hum Genet 132, 1073–1075 (2013). https://doi.org/10.1007/s00439-013-1336-x

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