Skip to main content
Log in

Upstream stimulatory factor 1 associated with familial combined hyperlipidemia, LDL cholesterol, and triglycerides

  • Original Investigation
  • Published:
Human Genetics Aims and scope Submit manuscript

Abstract

Positive evidence has been reported for linkage and association between the upstream stimulatory factor 1 gene (USF1) and familial combined hyperlipidemia (FCHL). We genotyped the two most positive single-nucleotide polymorphisms (SNPs) (usf1s1: rs3737787 and usf1s2: rs2073658) from previous studies in a large family sample. This sample included 2,195 subjects in 87 Utah pedigrees ascertained for early death due to coronary heart disease (CHD), early strokes, or early onset hypertension. There were a total of 262 relative pairs in these families with FCHL. In the full family sample, FCHL was associated with usf1s1 (P=0.02). Triglyceride and LDL cholesterol defined qualitatively or quantitatively were also associated with usf1s1 (P=0.02–0.05). Results were strengthened for qualitative and quantitative triglyceride and LDL cholesterol when data from males only was analyzed, revealing associations for usf1s1 (P=0.001–0.02), usf1s2 (P=0.02–0.05) and the haplotype of these two SNPs (P=0.01–0.04). The strongest results were in the subset of subjects from families ascertained for premature stroke or hypertension, rather than those ascertained for premature CHD. This study replicates the involvement of USF1 in FCHL and related lipid traits in a family sample not ascertained for FCHL.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Allayee H, Krass KL, Pajukanta P, Cantor RM, van der Kallen CJ, Mar R, Rotter JI, de Bruin TW, Peltonen L, Lusis AJ (2002) Locus for elevated apolipoprotein B levels on chromosome 1p31 in families with familial combined hyperlipidemia. Circ Res 90:926–931

    Article  CAS  PubMed  Google Scholar 

  • Botma G, Verhoeven AJ, Jansen H (2001) Hepatic lipase promoter activity is reduced by the C-480G and G-216A substitutions present in the common LIPC variant and is increased by upstream stimulatory factor. Atherosclerosis 154:625–632

    Article  CAS  PubMed  Google Scholar 

  • Casado M, Vallet VS, Kahn A, Vaulont S (1999) Essential role in vivo of upstream stimulatory factors for a normal dietary response of the fatty acid synthase gene in the liver. J Biol Chem 274:2009–2013

    Article  CAS  PubMed  Google Scholar 

  • Coon H, Myers RH, Borecki IB, Arnett DK, Hunt SC, Provinde MA, Djousse L, Leppert MF (2000) Replication of linkage of familial combined hyperlipidemia to chromosome 1q with additional heterogeneous effect of apolipoprotein A-II/C-III/A-IV locus The NHLBI family heart study. Arterioscler Thromb Vasc Biol 20:2275–2280

    CAS  PubMed  Google Scholar 

  • Elbein SC, Hoffman MD, Teng K, Leppert MF, Hasstedt SJ (1999) A genome-wide search for type 2 diabetes susceptibility genes in Utah Caucasians. Diabetes 48:1175–1182

    CAS  PubMed  Google Scholar 

  • Genest JJ Jr, Martin-Munley SS, McNamara JR, Ordovas JM, Jenner J, Myers RH, Silberman SR, Wilson PW, Salem DN, Schaefer EJ (1992) Familial lipoprotein disorders in patients with premature coronary artery disease. Circulation 85:2025–2033

    PubMed  Google Scholar 

  • Goldstein JL, Schrott HG, Hazzard WR, Bierman EL, Motulsky AG (1973) Hyperlipidemia in coronary heart disease II Genetic analysis of lipid levels in 176 families and delineation of a new inherited disorder, combined hyperlipidemia. J Clin Invest 52:1544–1568

    CAS  PubMed  Google Scholar 

  • Grundy SM, Chait A, Brunzell JD (1987) Familial combined hyperlipidemia workshop. Arteriosclerosis 7:203–207

    Google Scholar 

  • Hanson RL, Ehm MG, Pettitt DJ, Prochazka M, Thompson DB, Timberlake D, Foroud T, Kobes S, Baier L, Burns DK, Almasy L, Blangero J, Garvey WT, Bennett PH, Knowler WC (1998) An autosomal genomic scan for loci linked to type II diabetes mellitus and body-mass index in Pima Indians. Am J Hum Genet 634:1130–1138

    Article  Google Scholar 

  • Hsueh WC, St Jean PL, Mitchell BD, Pollin TI, Knowler WC, Ehm MG, Bell CJ, Sakul H, Wagner MJ, Burns DK, Shuldiner AR (2003) Genome-wide and fine-mapping linkage studies of type 2 diabetes and glucose traits in the Old Order Amish: evidence for a new diabetes locus on chromosome 14q11 and confirmation of a locus on 1q21–q24. Diabetes 52:550–557

    CAS  PubMed  Google Scholar 

  • Hunt SC, Stephenson SH, Hopkins PN, Williams RR (1991) Predictors of an increased risk of future hypertension in Utah pedigrees: a screening analysis. Hypertension 17:969–976

    CAS  PubMed  Google Scholar 

  • Iynedjian PB (1998) Identification of upstream stimulatory factor as transcriptional activator of the liver promoter of the glucokinase gene. Biochem J 333:705–712

    CAS  PubMed  Google Scholar 

  • Laird NM, Horvath S, Xu X (2000) Implementing a unified approach to family based tests of association. Genet Epidemiol 19 (Suppl 1):36–42

    Article  Google Scholar 

  • Lake SL, Blacker D, Laird NM (2000) Family-based tests of association in the presence of linkage. Am J Hum Genet 67:1515–1525

    Article  CAS  PubMed  Google Scholar 

  • Lipid Research Clinics (1974) Lipid research clinics program manual of laboratory operations. US Department of Health and Human Services, Washington, D.C.

  • Lipid Research Clinics Epidemiology Committee (1979) Plasma lipid distributions in selected North American populations: the lipid research clinics program prevalence study. Circulation 60:427–439

    PubMed  Google Scholar 

  • Martin CC, Svitek CA, Oeser JK, Henderson E, Stein R, O’Brien RM (2003) Upstream stimulatory factor (USF) and neurogenic differentiation/beta-cell E-box transactivator 2 (NeuroD/BETA2) contribute to islet-specific glucose-6-phosphatase catalytic-subunit-related protein (IGRP) gene expression. Biochem J 371:675–686

    Article  CAS  PubMed  Google Scholar 

  • O’Connell JR, Weeks DE (1998) PEDCHECK: a program for identification of genotype incompatibilities in linkage analysis. Am J Hum Genet 63:259–266

    Article  CAS  PubMed  Google Scholar 

  • Pajukanta P, Nuotio I, Terwilliger JD, Porkka KVK, Ylitalo K, Pihlajamaki J, Suomalainen AJ, Syvanen A-C, Lehtimaki T, Viikari JSA, Laakso M, Taskinen M-R, Ehnohlm C, Peltonen L (1998) Linkage of familial combined hyperlipidemia to chromosome 1q21–q23. Nat Genet 18:369–373

    Article  CAS  PubMed  Google Scholar 

  • Pajukanta P, Lilja HE, Sinsheimer JS, Cantor RM, Lusis AJ, Gentile M, Duan XJ, Soro-Paavonen A, Naukkarinen J, Saarela J, Laakso M, Ehnholm C, Taskinen M-R, Peltonen L (2004) Familial combined hyperlipidemia is associated with upstream transcription factor 1 (USF1). Nat Genet 36:371–376

    Article  CAS  PubMed  Google Scholar 

  • Pastier D, Lacorte JM, Chambaz J, Cardot P, Riberio A (2002) Two initiator-like elements are required for the combined activation of the human apolipoprotein C-III promoter by upstream stimulatory factor and hepatic nuclear factor 4. J Biol Chem 277:15199–15206

    Article  CAS  PubMed  Google Scholar 

  • Pei W, Baron H, Muller-Myhsok B, Knoblauch H, Al-Yahyaee SA, Hui R, Wu X, Liu L, Busjahn A, Luft FC, Schuster H (2000) Support for linkage of familial combined hyperlipidemia to chromosome 1q21–q23 in Chinese and German families. Clin Genet 57:29–34

    Article  CAS  PubMed  Google Scholar 

  • Putt W, Palmen J, Nicaud V, Tregouet D-A, Tahri-Daizadeh N, Flavell DM, Humphries SE, Talmud PJ, EARSII group (2004) Variation in USF1 shows haplotype effects, gene : gene and gene : environment associations with glucose and lipid parameters in the European Atherosclerosis Research Study II. Hum Genet 13:1587–1597

    CAS  Google Scholar 

  • Rabinowitz D, Laird NM (2000) A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information. Hum Hered 504:227–233

    Google Scholar 

  • Read ML, Clark AR, Doeherty K (1993) The helix–loop–helix transcription factor USF (upstream stimulating factor) binds to a regulatory sequence of the human insulin gene enhancer. Biochem J 295:233–237

    CAS  PubMed  Google Scholar 

  • Riberio A, Pastier D, Kardassis D, Chambaz, J, Cardot P (1999) Cooperative binding of upstream stimulatory factor and hepatic nuclear factor 4 drives the transcription of the human apolipoprotein A-II gene. J Biol Chem 247:1216–1225

    Article  Google Scholar 

  • Schneider S, Roessli D, Excofier L (2000) Arlequin: a software for population genetics data analysis, ver 2.000. Genetics and Biometry Lab, Department of Anthropology, University of Geneva

  • Selby JV, Newman B, Ouiroga J, Christian JC, Austin MA, Fabsitz RR (1991) Concordance for dislipidemic hypertension in male twins. JAMA 265:2079–2084

    Article  CAS  PubMed  Google Scholar 

  • Shieh BH, Sparkes RS, Gaynor RB, Lusis AJ (1993) Localization of the gene encoding upstream stimulatory factor (USF) to human chromosome 1q22–q23. Genomics 16:266–268

    Article  CAS  PubMed  Google Scholar 

  • Smih F, Rouet P, Lucas S, Mairal A, Sengenes C, Lafontan M, Vaulont S, Casado M, Langin D (2002) Transcriptional regulation of adipocyte hormone-sensitive lipase by glucose. Diabetes 51:293–300

    CAS  PubMed  Google Scholar 

  • Spielman RS, McGinnis RE, Ewens WJ (1993) Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM). Am J Hum Genet 65:578–580

    Google Scholar 

  • Vionnet N, Hani El-H, Dupont S, Gallina S, Francke S, Dotte S, De Matos F, Durand E, Lepretre F, Lecoeur C, Gallina P, Zekiri L, Dina C, Froguel P (2000) Genomewide search for type 2 diabetes susceptibility genes in French whites: evidence for a novel susceptibility locus for early-onset diabetes on chromosome 3qter and independent replication of a type 2 diabetes locus on chromosome 1q21–q24. Am J Hum Genet 67:1470–1480

    Google Scholar 

  • Wang D, Sul HS (1997) Upstream stimulatory factor binding to the E-box at −65 is required for insulin regulation of the fatty acid synthase promoter. J Biol Chem 272:26367–26374

    Article  CAS  PubMed  Google Scholar 

  • Watanabe RM, Ghosh S, Langfeld CD, Valle TT, Hauser ER, Magnuson VL, Mohlke KL, Silander K, Ally DS, Chines P, Blaschak-Harvan J, Douglas JA, Duren WL, Epstein MP, Fingerlin TE, Kaleta HS, Lange EM, Li C, McEachin RC, Stringham HM, Trager E, White PP, Barlow J Jr, Birznieks G, Chang J, Eldridge W (2000) The Finland–United States investigation of non-insulin-dependent diabetes mellitus genetics (FUSION) study II An autosomal genome scan for diabetes-related quantitative-trait loci. Am J Hum Genet 67:1186–1200

    CAS  PubMed  Google Scholar 

  • Williams RR, Hunt SC (1987) Recruitment of members of high-risk Utah pedigrees. Control Clin Trials 8:105S–114S

    Article  CAS  PubMed  Google Scholar 

  • Williams RR, Hunt SC, Hopkins PN, Stults BM, Wu LL, Hasstedt SJ, Barlow GK, Stephenson SH, Lalouel JM, Kuida H (1998) Familial dislipidemic hypertension. Evidence from 58 Utah families for a syndrome present in approximately 12% of patients with essential hypertension. JAMA 259:3579–3586

    Article  Google Scholar 

  • Wiltshire S, Hattersley AT, Hitman GA, Walker M, Levy JC, Sampson M, O’Rahilly S, Frayling TM, Bell JI, Lathrop GM, Bennett A, Dhillon R, Fletcher C, Groves CJ, Jones E, Prestwich P, Simenek N, Rao PV, Wishart M, Bottazzo GF, Foxon R, Howell S, Smedley D, Cardon LR, Menzel S, McCarthy MI (2001) A genomewide scan for loci predisposing to type 2 diabetes in a UK population (the Diabetes UK Warren 2 Repository): analysis of 573 pedigrees provides independent replication of a susceptibility locus on chromosome 1q. Am J Hum Genet 69:553–569

    Google Scholar 

  • Xie X, Ott J (1993) Testing linkage disequilibrium between a disease gene and marker loci. Am J Hum Genet 53:1107

    PubMed  Google Scholar 

  • Yang XP, Freeman LA, Knapper CL, Amar MJ, Remaley A, Brewer HB Jr, Santainarina-Fojo S (2002) The E-box motif in the proximal ABCA1 promoter mediates transcriptional repression of the ABCA1 gene. J Lipid Res 43:297–306

    PubMed  Google Scholar 

Download references

Acknowledgements

This research was supported by NIH grants HL21088, HL24855, HL44738, AG18734, and HD17463. We thank the subjects participating in this study.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hilary Coon.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Coon, H., Xin, Y., Hopkins, P.N. et al. Upstream stimulatory factor 1 associated with familial combined hyperlipidemia, LDL cholesterol, and triglycerides. Hum Genet 117, 444–451 (2005). https://doi.org/10.1007/s00439-005-1340-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00439-005-1340-x

Keywords

Navigation