Abstract
Positive evidence has been reported for linkage and association between the upstream stimulatory factor 1 gene (USF1) and familial combined hyperlipidemia (FCHL). We genotyped the two most positive single-nucleotide polymorphisms (SNPs) (usf1s1: rs3737787 and usf1s2: rs2073658) from previous studies in a large family sample. This sample included 2,195 subjects in 87 Utah pedigrees ascertained for early death due to coronary heart disease (CHD), early strokes, or early onset hypertension. There were a total of 262 relative pairs in these families with FCHL. In the full family sample, FCHL was associated with usf1s1 (P=0.02). Triglyceride and LDL cholesterol defined qualitatively or quantitatively were also associated with usf1s1 (P=0.02–0.05). Results were strengthened for qualitative and quantitative triglyceride and LDL cholesterol when data from males only was analyzed, revealing associations for usf1s1 (P=0.001–0.02), usf1s2 (P=0.02–0.05) and the haplotype of these two SNPs (P=0.01–0.04). The strongest results were in the subset of subjects from families ascertained for premature stroke or hypertension, rather than those ascertained for premature CHD. This study replicates the involvement of USF1 in FCHL and related lipid traits in a family sample not ascertained for FCHL.
Similar content being viewed by others
References
Allayee H, Krass KL, Pajukanta P, Cantor RM, van der Kallen CJ, Mar R, Rotter JI, de Bruin TW, Peltonen L, Lusis AJ (2002) Locus for elevated apolipoprotein B levels on chromosome 1p31 in families with familial combined hyperlipidemia. Circ Res 90:926–931
Botma G, Verhoeven AJ, Jansen H (2001) Hepatic lipase promoter activity is reduced by the C-480G and G-216A substitutions present in the common LIPC variant and is increased by upstream stimulatory factor. Atherosclerosis 154:625–632
Casado M, Vallet VS, Kahn A, Vaulont S (1999) Essential role in vivo of upstream stimulatory factors for a normal dietary response of the fatty acid synthase gene in the liver. J Biol Chem 274:2009–2013
Coon H, Myers RH, Borecki IB, Arnett DK, Hunt SC, Provinde MA, Djousse L, Leppert MF (2000) Replication of linkage of familial combined hyperlipidemia to chromosome 1q with additional heterogeneous effect of apolipoprotein A-II/C-III/A-IV locus The NHLBI family heart study. Arterioscler Thromb Vasc Biol 20:2275–2280
Elbein SC, Hoffman MD, Teng K, Leppert MF, Hasstedt SJ (1999) A genome-wide search for type 2 diabetes susceptibility genes in Utah Caucasians. Diabetes 48:1175–1182
Genest JJ Jr, Martin-Munley SS, McNamara JR, Ordovas JM, Jenner J, Myers RH, Silberman SR, Wilson PW, Salem DN, Schaefer EJ (1992) Familial lipoprotein disorders in patients with premature coronary artery disease. Circulation 85:2025–2033
Goldstein JL, Schrott HG, Hazzard WR, Bierman EL, Motulsky AG (1973) Hyperlipidemia in coronary heart disease II Genetic analysis of lipid levels in 176 families and delineation of a new inherited disorder, combined hyperlipidemia. J Clin Invest 52:1544–1568
Grundy SM, Chait A, Brunzell JD (1987) Familial combined hyperlipidemia workshop. Arteriosclerosis 7:203–207
Hanson RL, Ehm MG, Pettitt DJ, Prochazka M, Thompson DB, Timberlake D, Foroud T, Kobes S, Baier L, Burns DK, Almasy L, Blangero J, Garvey WT, Bennett PH, Knowler WC (1998) An autosomal genomic scan for loci linked to type II diabetes mellitus and body-mass index in Pima Indians. Am J Hum Genet 634:1130–1138
Hsueh WC, St Jean PL, Mitchell BD, Pollin TI, Knowler WC, Ehm MG, Bell CJ, Sakul H, Wagner MJ, Burns DK, Shuldiner AR (2003) Genome-wide and fine-mapping linkage studies of type 2 diabetes and glucose traits in the Old Order Amish: evidence for a new diabetes locus on chromosome 14q11 and confirmation of a locus on 1q21–q24. Diabetes 52:550–557
Hunt SC, Stephenson SH, Hopkins PN, Williams RR (1991) Predictors of an increased risk of future hypertension in Utah pedigrees: a screening analysis. Hypertension 17:969–976
Iynedjian PB (1998) Identification of upstream stimulatory factor as transcriptional activator of the liver promoter of the glucokinase gene. Biochem J 333:705–712
Laird NM, Horvath S, Xu X (2000) Implementing a unified approach to family based tests of association. Genet Epidemiol 19 (Suppl 1):36–42
Lake SL, Blacker D, Laird NM (2000) Family-based tests of association in the presence of linkage. Am J Hum Genet 67:1515–1525
Lipid Research Clinics (1974) Lipid research clinics program manual of laboratory operations. US Department of Health and Human Services, Washington, D.C.
Lipid Research Clinics Epidemiology Committee (1979) Plasma lipid distributions in selected North American populations: the lipid research clinics program prevalence study. Circulation 60:427–439
Martin CC, Svitek CA, Oeser JK, Henderson E, Stein R, O’Brien RM (2003) Upstream stimulatory factor (USF) and neurogenic differentiation/beta-cell E-box transactivator 2 (NeuroD/BETA2) contribute to islet-specific glucose-6-phosphatase catalytic-subunit-related protein (IGRP) gene expression. Biochem J 371:675–686
O’Connell JR, Weeks DE (1998) PEDCHECK: a program for identification of genotype incompatibilities in linkage analysis. Am J Hum Genet 63:259–266
Pajukanta P, Nuotio I, Terwilliger JD, Porkka KVK, Ylitalo K, Pihlajamaki J, Suomalainen AJ, Syvanen A-C, Lehtimaki T, Viikari JSA, Laakso M, Taskinen M-R, Ehnohlm C, Peltonen L (1998) Linkage of familial combined hyperlipidemia to chromosome 1q21–q23. Nat Genet 18:369–373
Pajukanta P, Lilja HE, Sinsheimer JS, Cantor RM, Lusis AJ, Gentile M, Duan XJ, Soro-Paavonen A, Naukkarinen J, Saarela J, Laakso M, Ehnholm C, Taskinen M-R, Peltonen L (2004) Familial combined hyperlipidemia is associated with upstream transcription factor 1 (USF1). Nat Genet 36:371–376
Pastier D, Lacorte JM, Chambaz J, Cardot P, Riberio A (2002) Two initiator-like elements are required for the combined activation of the human apolipoprotein C-III promoter by upstream stimulatory factor and hepatic nuclear factor 4. J Biol Chem 277:15199–15206
Pei W, Baron H, Muller-Myhsok B, Knoblauch H, Al-Yahyaee SA, Hui R, Wu X, Liu L, Busjahn A, Luft FC, Schuster H (2000) Support for linkage of familial combined hyperlipidemia to chromosome 1q21–q23 in Chinese and German families. Clin Genet 57:29–34
Putt W, Palmen J, Nicaud V, Tregouet D-A, Tahri-Daizadeh N, Flavell DM, Humphries SE, Talmud PJ, EARSII group (2004) Variation in USF1 shows haplotype effects, gene : gene and gene : environment associations with glucose and lipid parameters in the European Atherosclerosis Research Study II. Hum Genet 13:1587–1597
Rabinowitz D, Laird NM (2000) A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information. Hum Hered 504:227–233
Read ML, Clark AR, Doeherty K (1993) The helix–loop–helix transcription factor USF (upstream stimulating factor) binds to a regulatory sequence of the human insulin gene enhancer. Biochem J 295:233–237
Riberio A, Pastier D, Kardassis D, Chambaz, J, Cardot P (1999) Cooperative binding of upstream stimulatory factor and hepatic nuclear factor 4 drives the transcription of the human apolipoprotein A-II gene. J Biol Chem 247:1216–1225
Schneider S, Roessli D, Excofier L (2000) Arlequin: a software for population genetics data analysis, ver 2.000. Genetics and Biometry Lab, Department of Anthropology, University of Geneva
Selby JV, Newman B, Ouiroga J, Christian JC, Austin MA, Fabsitz RR (1991) Concordance for dislipidemic hypertension in male twins. JAMA 265:2079–2084
Shieh BH, Sparkes RS, Gaynor RB, Lusis AJ (1993) Localization of the gene encoding upstream stimulatory factor (USF) to human chromosome 1q22–q23. Genomics 16:266–268
Smih F, Rouet P, Lucas S, Mairal A, Sengenes C, Lafontan M, Vaulont S, Casado M, Langin D (2002) Transcriptional regulation of adipocyte hormone-sensitive lipase by glucose. Diabetes 51:293–300
Spielman RS, McGinnis RE, Ewens WJ (1993) Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM). Am J Hum Genet 65:578–580
Vionnet N, Hani El-H, Dupont S, Gallina S, Francke S, Dotte S, De Matos F, Durand E, Lepretre F, Lecoeur C, Gallina P, Zekiri L, Dina C, Froguel P (2000) Genomewide search for type 2 diabetes susceptibility genes in French whites: evidence for a novel susceptibility locus for early-onset diabetes on chromosome 3qter and independent replication of a type 2 diabetes locus on chromosome 1q21–q24. Am J Hum Genet 67:1470–1480
Wang D, Sul HS (1997) Upstream stimulatory factor binding to the E-box at −65 is required for insulin regulation of the fatty acid synthase promoter. J Biol Chem 272:26367–26374
Watanabe RM, Ghosh S, Langfeld CD, Valle TT, Hauser ER, Magnuson VL, Mohlke KL, Silander K, Ally DS, Chines P, Blaschak-Harvan J, Douglas JA, Duren WL, Epstein MP, Fingerlin TE, Kaleta HS, Lange EM, Li C, McEachin RC, Stringham HM, Trager E, White PP, Barlow J Jr, Birznieks G, Chang J, Eldridge W (2000) The Finland–United States investigation of non-insulin-dependent diabetes mellitus genetics (FUSION) study II An autosomal genome scan for diabetes-related quantitative-trait loci. Am J Hum Genet 67:1186–1200
Williams RR, Hunt SC (1987) Recruitment of members of high-risk Utah pedigrees. Control Clin Trials 8:105S–114S
Williams RR, Hunt SC, Hopkins PN, Stults BM, Wu LL, Hasstedt SJ, Barlow GK, Stephenson SH, Lalouel JM, Kuida H (1998) Familial dislipidemic hypertension. Evidence from 58 Utah families for a syndrome present in approximately 12% of patients with essential hypertension. JAMA 259:3579–3586
Wiltshire S, Hattersley AT, Hitman GA, Walker M, Levy JC, Sampson M, O’Rahilly S, Frayling TM, Bell JI, Lathrop GM, Bennett A, Dhillon R, Fletcher C, Groves CJ, Jones E, Prestwich P, Simenek N, Rao PV, Wishart M, Bottazzo GF, Foxon R, Howell S, Smedley D, Cardon LR, Menzel S, McCarthy MI (2001) A genomewide scan for loci predisposing to type 2 diabetes in a UK population (the Diabetes UK Warren 2 Repository): analysis of 573 pedigrees provides independent replication of a susceptibility locus on chromosome 1q. Am J Hum Genet 69:553–569
Xie X, Ott J (1993) Testing linkage disequilibrium between a disease gene and marker loci. Am J Hum Genet 53:1107
Yang XP, Freeman LA, Knapper CL, Amar MJ, Remaley A, Brewer HB Jr, Santainarina-Fojo S (2002) The E-box motif in the proximal ABCA1 promoter mediates transcriptional repression of the ABCA1 gene. J Lipid Res 43:297–306
Acknowledgements
This research was supported by NIH grants HL21088, HL24855, HL44738, AG18734, and HD17463. We thank the subjects participating in this study.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Coon, H., Xin, Y., Hopkins, P.N. et al. Upstream stimulatory factor 1 associated with familial combined hyperlipidemia, LDL cholesterol, and triglycerides. Hum Genet 117, 444–451 (2005). https://doi.org/10.1007/s00439-005-1340-x
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00439-005-1340-x