Abstract
The pst operon of Escherichia coli is composed of five genes pstS, pstC, pstA, pstB and phoU, that encode a high-affinity phosphate transport system and a negative regulator of the PHO regulon. Transcription of pst is induced under phosphate shortage and is initiated at the promoter located upstream of the first gene of the operon, pstS. Here, we show by four different technical approaches the existence of additional internal promoters upstream of pstC, pstB and phoU. These promoters are not induced by Pi-limitation and do not possess PHO-box sequences. Plasmids carrying the pst internal genes partially complement chromosomal mutations in their corresponding genes, indicating that they are translated into functional proteins.
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Aguena M, Spira B (2003) RT-PCR of long prokaryotic operon transcripts without DNase treatment. J Microbiol Methods 55:419–423
Aguena M, Spira B (2008) Transcriptional processing of the pst operon of Escherichia coli. Curr Microbiol 58:264–267
Aguena M, Yagil E, Spira B (2002) Transcriptional analysis of the pst operon of Escherichia coli. Mol Genet Genomics 268:518–524
Aguena M, Ferreira GM, Spira B (2009) Stability of the pstS transcript of Escherichia coli. Arch Microbiol 191:105–112
Amemura M, Makino K, Shinagawa H, Kobayashi A, Nakata A (1985) Nucleotide sequence of the genes involved in phosphate transport and regulation of the phosphate regulon in Escherichia coli. J Mol Biol 184:241–250
Baek JH, Lee SY (2006) Novel gene members in the Pho regulon of Escherichia coli. FEMS Microbiol Lett 264:104–109
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254
Brosius J (1984) Plasmid vectors for the selection of promoters. Gene 27:151–160
Carmany DO, Hollingsworth K, McCleary WR (2003) Genetic and biochemical studies of phosphatase activity of PhoR. J Bacteriol 185:1112–1115
Chan FY, Torriani A (1996) PstB protein of the phosphate-specific transport system of Escherichia coli is an ATPase. J Bacteriol 178:3974–3977
Chen PS, Toribara TY, Warner H (1956) Microdetermination of phosphorus. Anal Chem 28:1756–1758
Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate–phenol–chloroform extraction. Anal Biochem 162:156–159
Cox GB, Rosenberg H, Downie JA, Silver S (1981) Genetic analysis of mutants affected in the Pst inorganic phosphate transport system. J Bacteriol 148:1–9
Horowitz H, Platt T (1982) Identification of trp-p2, an internal promoter in the tryptophan operon of Escherichia coli. J Mol Biol 156:257–267
Horowitz H, Platt T (1983) Initiation in vivo at the internal trp p2 promoter of Escherichia coli. J Biol Chem 258:7890–7893
Hurst L (2009) Evolutionary genomics and the reach of selection. J Biol 8:12
Kato J, Yamada K, Muramatsu A, Hardoyo K, Ohtake H (1993) Genetic improvement of Escherichia coli for enhanced biological removal of phosphate from wastewater. Appl Environ Microbiol 59:3744–3749
LeBlanc H, Lang AS, Beatty JT (1999) Transcript cleavage, attenuation, and an internal promoter in the Rhodobacter capsulatus puc operon. J Bacteriol 181:4955–4960
Levinthal C, Fetherol K, Signer E (1962) Reactivation and hybridization of reduced alkaline phosphatase. Proc Natl Acad Sci USA 48:1230–1237
Li H, O’Sullivan DJ (2006) Identification of a nisI promoter within the nisABCTIP operon that may enable establishment of nisin immunity prior to induction of the operon via signal transduction. J Bacteriol 188:8496–8503
Makino K, Amemura M, Kim SK, Nakata A, Shinagawa H (1993) Role of the sigma 70 subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli. Genes Dev 7:149–160
Miller JH (1992) A short course in bacterial genetics: a laboratory manual and handbook for Escherichia coli and related bacteria. Cold Spring Harbor Laboratory, Cold Spring Harbor
Muda M, Rao NN, Torriani A (1992) Role of PhoU in phosphate transport and alkaline phosphatase regulation. J Bacteriol 174:8057–8064
Oyamada T, Yokoyama K, Morinaga M, Suzuki M, Makino K (2007) Expression of Escherichia coli DcuS-R two-component regulatory system is regulated by the secondary internal promoter which is activated by CRP-cAMP. J Microbiol 45:234–240
Rice CD, Pollard JE, Lewis ZT, McCleary WR (2009) Employment of a promoter-swapping technique shows that PhoU modulates the activity of the PstSCAB2 ABC transporter in Escherichia coli. Appl Environ Microbiol 75:573–582
Rosenberg H, Gerdes RG, Chegwidden K (1977) Two systems for the uptake of phosphate in Escherichia coli. J Bacteriol 131:505–511
Schurdell MS, Woodbury GM, McCleary WR (2007) Genetic evidence suggests that the intergenic region between pstA and pstB plays a role in the regulation of rpoS translation during phosphate limitation. J Bacteriol 189:1150–1153
Shaw WV (1975) Chloramphenicol acetyltransferase from chloramphenicol-resistant bacteria. Meth Enzymol 43:737–755
Spira B, Ferenci T (2008) Alkaline phosphatase as a reporter of sigma(S) levels and rpoS polymorphisms in different E coli strains. Arch Microbiol 189:43–47
Spira B, Yagil E (1998) The relation between ppGpp and the PHO regulon in Escherichia coli. Mol Gen Genet 257(4):469–477
Steed PM, Wanner BL (1993) Use of the rep technique for allele replacement to construct mutants with deletions of the pstSCAB-phoU operon: evidence of a new role for the PhoU protein in the phosphate regulon. J Bacteriol 175:6797–6809
Taschner NP, Yagil E, Spira B (2006) The effect of IHF on sigmaS selectivity of the phoA and pst promoters of Escherichia coli. Arch Microbiol 185:234–237
Typas A, Becker G, Hengge R (2007) The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase. Mol Microbiol 63:1296–1306
Wanner BL (1996) Phosphorus assimilation and control of the phosphate regulon. In: Neidhardt FC, Curtiss R (eds) Escherichia coli and Salmonella: cellular and molecular biology. American Society for Microbiology, Washington, pp 1357–1381
Webb DC, Rosenberg H, Cox GB (1992) Mutational analysis of the Escherichia coli phosphate-specific transport system, a member of the traffic ATPase (or ABC) family of membrane transporters A role for proline residues in transmembrane helices. J Biol Chem 267:24661–24668
Wek RC, Hatfield GW (1986) Examination of the internal promoter, PE, in the ilvGMEDA operon of E. coli K-12. Nucleic Acids Res 14:2763–2777
Willsky GR, Malamy MH (1980) Characterization of two genetically separable inorganic phosphate transport systems in Escherichia coli. J Bacteriol 144:356–365
Xiao H, Kalman M, Ikehara K, Zemel S, Glaser G, Cashel M (1991) Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. J Biol Chem 266:5980–5990
Acknowledgments
This work was supported by Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP). Meire Aguena was a recipient of FAPESP Ph.D. scholarship 02/04070-9. Juliana Velasco was a recipient of a CNPq undergraduate scholarship. We also thank FAPESP and CNPq for supported travel allowances for Ezra Yagil travel allowances to Brazil. Luiz Gustavo de Almeida performed the determination of Pi concentration in LB and medium A.
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Communicated by D. Andersson.
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Spira, B., Aguena, M., de Castro Oliveira, J.V. et al. Alternative promoters in the pst operon of Escherichia coli . Mol Genet Genomics 284, 489–498 (2010). https://doi.org/10.1007/s00438-010-0584-x
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DOI: https://doi.org/10.1007/s00438-010-0584-x