Skip to main content
Log in

Activity of phosphoforms and truncated versions of Ndt80, a checkpoint-regulated sporulation-specific transcription factor of Saccharomyces cerevisiae

  • Original Paper
  • Published:
Molecular Genetics and Genomics Aims and scope Submit manuscript

Abstract

Ndt80 contributes to the highly regulated cascade of sequential gene expression that directs spore formation in Saccharomyces cerevisiae. This DNA-binding transcriptional activator, which is responsible for the expression of a set of middle sporulation-specific genes, is a target of the meiotic recombination checkpoint. Triggering of this checkpoint prevents phosphorylation and accumulation of active Ndt80. In this study we have investigated the requirements for the activation function of Ndt80 by exploring the role of phosphorylation in the regulation of its activity and by examining the effect of C-terminal truncations. Of three phosphoforms of Ndt80 that we resolved, which we refer to as P~Ndt80′′, P~Ndt80′, and P~Ndt80 in order of increasing electrophoretic mobility, the P~Ndt80′′ and P~Ndt80′ isoforms correlated with active Ndt80. In particular, P~Ndt80′′ was present in lysates from wild-type sporulating cells and in cells that bypassed checkpoint-mediated arrest as a result of mutations in RAD17, SUM1 , or SWE1, or overexpression of NDT80. P~Ndt80′ was the slowest-migrating isoform that accumulated in Δ ime2 ime2 Δ sum1 sum1 cells in sporulation medium and in mitotic cells that ectopically expressed NDT80. Nonphosphorylated Ndt80 and P~Ndt80, which had a slightly lower mobility than nonphosphorylated Ndt80 and was the predominant phosphoform present in checkpoint-arrested cells, correlated with inactive Ndt80. These data are consistent with the notion that extensive phosphorylation, but not Ime2-dependent phosphorylation, of Ndt80 is required for its activity. Examination of the effect of increasingly extensive truncation of the C terminal region of Ndt80 revealed that some functions of Ndt80 were more sensitive to a reduction in its activity than others. In particular, we found that a truncated version of Ndt80 that lacked the last 110 residues was able to promote expression of some middle sporulation-specific genes, but could not direct spore formation. Full activity, however, could be restored to this version of Ndt80 by increasing its level of expression.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1A–E.
Fig. 2A–E.
Fig. 3A–C.
Fig. 4A–O.

Similar content being viewed by others

References

  • Benjamin KR, Zhang C, Shokat KM, Herskowitz I (2003) Control of landmark events in meiosis by the CDK Cdc28 and the meiosis-specific kinase Ime2. Genes Dev 17:1524–1539

    Article  CAS  PubMed  Google Scholar 

  • Bishop DK, Park D, Xu L, Kleckner N (1992) DMC1: a meiosis-specific yeast homolog of E. coli recA required for recombination, synaptonemal complex formation, and cell cycle progression. Cell 69:439–456

    CAS  PubMed  Google Scholar 

  • Bolte M, Steigemann P, Braus GH, Irniger S (2002) Inhibition of APC-mediated proteolysis by the meiosis-specific protein kinase Ime2. Proc Natl Acad Sci USA 99:4385–4390

    Article  CAS  PubMed  Google Scholar 

  • Booher RN, Deshaies RJ, Kirschner MW (1993) Properties of Saccharomyces cerevisiae wee1 and its differential regulation of p34CDC28 in response to G1 and G2 cyclins. EMBO J 12:3417–3426

    CAS  PubMed  Google Scholar 

  • Brush GS, Morrow DM, Hieter P, Kelly TJ (1996) The ATM homologue MEC1 is required for phosphorylation of replication protein A in yeast. Proc Natl Acad Sci USA 93:15075–15080

    Article  CAS  PubMed  Google Scholar 

  • Chu S, Herskowitz I (1998) Gametogenesis in yeast is regulated by a transcriptional cascade dependent on Ndt80. Mol Cell 1:685–696

    CAS  PubMed  Google Scholar 

  • Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz I (1998) The transcriptional program of sporulation in budding yeast. Science 282:699–705

    CAS  PubMed  Google Scholar 

  • Clancy MJ (1998) Meiosis: step-by-step through sporulation. Curr Biol 8:R461–463

    CAS  PubMed  Google Scholar 

  • Dahmann C, Futcher B (1995) Specialization of B-type cyclins for mitosis or meiosis in S. cerevisiae. Genetics 140:957–963

    CAS  PubMed  Google Scholar 

  • Dirick L, Goetsch L, Ammerer G, Byers B (1998) Regulation of meiotic S phase by Ime2 and a Clb5,6-associated kinase in Saccharomyces cerevisiae. Science 281:1854–1857

    Article  CAS  PubMed  Google Scholar 

  • Foiani M, Nadjar-Boger E, Capone R, Sagee S, Hashimshoni T, Kassir Y (1996) A meiosis-specific protein kinase, Ime2, is required for the correct timing of DNA replication and for spore formation in yeast meiosis. Mol Gen Genet 253:278–288

    Article  CAS  PubMed  Google Scholar 

  • Garber AT, Segall J (1986) The SPS4 gene of Saccharomyces cerevisiae encodes a major sporulation-specific mRNA. Mol Cell Biol 6:4478–4485

    CAS  PubMed  Google Scholar 

  • Gietz D, St Jean A, Woods RA, Schiestl RH (1992) Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res 20:1425

    CAS  PubMed  Google Scholar 

  • Grandin N, Reed SI (1993) Differential function and expression of Saccharomyces cerevisiae B-type cyclins in mitosis and meiosis. Mol Cell Biol 13:2113–2125

    CAS  PubMed  Google Scholar 

  • Guttmann-Raviv N, Boger-Nadjar E, Edri I, Kassir Y (2001) Cdc28 and Ime2 possess redundant functions in promoting entry into premeiotic DNA replication in Saccharomyces cerevisiae. Genetics 159:1547–1558

    CAS  PubMed  Google Scholar 

  • Guttmann-Raviv N, Martin S, Kassir Y (2002) Ime2, a meiosis-specific kinase in yeast, is required for destabilization of its transcriptional activator, Ime1. Mol Cell Biol 22:2047–2056

    Article  CAS  PubMed  Google Scholar 

  • Hepworth SR, Ebisuzaki LK, Segall J (1995) A 15-base-pair element activates the SPS4 gene midway through sporulation in Saccharomyces cerevisiae. Mol Cell Biol 15:3934–3944

    CAS  PubMed  Google Scholar 

  • Hepworth SR, Friesen H, Segall J (1998) NDT80 and the meiotic recombination checkpoint regulate expression of middle sporulation-specific genes in Saccharomyces cerevisiae. Mol Cell Biol 18:5750–5761

    CAS  PubMed  Google Scholar 

  • Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR (1989) Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51–59

    CAS  PubMed  Google Scholar 

  • Honigberg SM, Purnapatre K (2003) Signal pathway integration in the switch from the mitotic cell cycle to meiosis in yeast. J Cell Sci 116:2137–2147

    Article  CAS  PubMed  Google Scholar 

  • Kupiec M, Byers B, Esposito RE, Mitchell AP (1997) Meiosis and sporulation in Saccharomyces cerevisiae. In: Pringle JR, Broach JR, Jones EW (eds) The molecular biology of the yeast Saccharomyces: cell cycle and cell biology, vol 3. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. pp 899–1036

  • Lamoureux JS, Stuart D, Tsang R, Wu C, Glover JN (2002) Structure of the sporulation-specific transcription factor Ndt80 bound to DNA. EMBO J 21:5721–5732

    Article  CAS  PubMed  Google Scholar 

  • Law DT, Segall J (1988) The SPS100 gene of Saccharomyces cerevisiae is activated late in the sporulation process and contributes to spore wall maturation. Mol Cell Biol 8:912–922

    CAS  PubMed  Google Scholar 

  • Leu JY, Roeder GS (1999) The pachytene checkpoint in S. cerevisiae depends on Swe1-mediated phosphorylation of the cyclin-dependent kinase Cdc28. Mol Cell 4:805–814

    CAS  PubMed  Google Scholar 

  • Lindgren A, Bungard D, Pierce M, Xie J, Vershon A, Winter E (2000) The pachytene checkpoint in Saccharomyces cerevisiae requires the Sum1 transcriptional repressor. EMBO J 19:6489–6497

    Article  CAS  PubMed  Google Scholar 

  • Longtine MS, McKenzie A 3rd, Demarini DJ, Shah NG, Wach A, Brachat A, Philippsen P, Pringle JR (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953–961

    CAS  PubMed  Google Scholar 

  • Lydall D, Nikolsky Y, Bishop DK, Weinert T (1996) A meiotic recombination checkpoint controlled by mitotic checkpoint genes. Nature 383:840–843

    CAS  PubMed  Google Scholar 

  • Mitchell AP (1994) Control of meiotic gene expression in Saccharomyces cerevisiae. Microbiol Rev 58:56–70

    CAS  PubMed  Google Scholar 

  • Mitchell AP, Driscoll SE, Smith HE (1990) Positive control of sporulation-specific genes by the IME1 and IME2 products in Saccharomyces cerevisiae. Mol Cell Biol 10:2104–2110

    CAS  PubMed  Google Scholar 

  • Montano SP, Pierce M, Cote ML, Vershon AK, Georgiadis MM (2002) Crystallographic studies of a novel DNA-binding domain from the yeast transcriptional activator Ndt80. Acta Crystallogr D Biol Crystallogr 58:2127–2130

    Article  PubMed  Google Scholar 

  • Murakami H, Nurse P (2000) DNA replication and damage checkpoints and meiotic cell cycle controls in the fission and budding yeasts. Biochem J 349:1–12

    Article  CAS  PubMed  Google Scholar 

  • Page AW, Orr-Weaver TL (1997) Stopping and starting the meiotic cell cycle. Curr Opin Genet Dev 7:23–31

    CAS  Google Scholar 

  • Pak J, Segall J (2002a) Regulation of the premiddle and middle phases of expression of the NDT80 gene during sporulation of Saccharomyces cerevisiae. Mol Cell Biol 22:6417–6429

    Article  CAS  PubMed  Google Scholar 

  • Pak J, Segall J (2002b) Role of Ndt80, Sum1, and Swe1 as targets of the meiotic recombination checkpoint that control exit from pachytene and spore formation in Saccharomyces cerevisiae. Mol Cell Biol 22:6430–6440

    Article  CAS  PubMed  Google Scholar 

  • Percival-Smith A, Segall J (1986) Characterization and mutational analysis of a cluster of three genes expressed preferentially during sporulation of Saccharomyces cerevisiae. Mol Cell Biol 6:2443–2451

    CAS  PubMed  Google Scholar 

  • Primig M, Williams RM, Winzeler EA, Tevzadze GG, Conway AR, Hwang SY, Davis RW, Esposito RE (2000) The core meiotic transcriptome in budding yeasts. Nat Genet 26:415–423

    CAS  PubMed  Google Scholar 

  • Rabitsch KP, Toth A, Galova M, Schleiffer A, Schaffner G, Aigner E, Rupp C, Penkner AM, Moreno-Borchart AC, Primig M, Esposito RE, Klein F, Knop M, Nasmyth K (2001) A screen for genes required for meiosis and spore formation based on whole-genome expression. Curr Biol 11:1001–1009

    CAS  PubMed  Google Scholar 

  • Roeder GS, Bailis JM (2000) The pachytene checkpoint. Trends Genet 16:395–403

    CAS  PubMed  Google Scholar 

  • Rowland O, Segall J (1998) A hydrophobic segment within the 81-amino-acid domain of TFIIIA from Saccharomyces cerevisiae is essential for its transcription factor activity. Mol Cell Biol 18:420–432

    CAS  PubMed  Google Scholar 

  • Shuster EO, Byers B (1989) Pachytene arrest and other meiotic effects of the start mutations in Saccharomyces cerevisiae. Genetics 123:29–43

    CAS  PubMed  Google Scholar 

  • Sopko R, Raithatha S, Stuart D (2002) Phosphorylation and maximal activity of Saccharomyces cerevisiae meiosis-specific transcription factor Ndt80 is dependent on Ime2. Mol Cell Biol 22:7024–7040

    Article  CAS  PubMed  Google Scholar 

  • Tung KS, Hong EJ, Roeder GS (2000) The pachytene checkpoint prevents accumulation and phosphorylation of the meiosis-specific transcription factor Ndt80. Proc Natl Acad Sci USA 97:12187–12192

    Article  CAS  PubMed  Google Scholar 

  • Vershon AK, Pierce M (2000) Transcriptional regulation of meiosis in yeast. Curr Opin Cell Biol 12:334–339

    Article  CAS  PubMed  Google Scholar 

  • Xie J, Pierce M, Gailus-Durner V, Wagner M, Winter E, Vershon AK (1999) Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Saccharomyces cerevisiae. EMBO J 18:6448–6454

    Article  CAS  PubMed  Google Scholar 

  • Xu L, Ajimura M, Padmore R, Klein C, Kleckner N (1995) NDT80, a meiosis-specific gene required for exit from pachytene in Saccharomyces cerevisiae. Mol Cell Biol 15:6572–6581

    CAS  PubMed  Google Scholar 

  • Xu L, Weiner BM, Kleckner N (1997) Meiotic cells monitor the status of the interhomolog recombination complex. Genes Dev 11:106–118

    CAS  PubMed  Google Scholar 

  • Yoshida M, Kawaguchi H, Sakata Y, Kominami K, Hirano M, Shima H, Akada R, Yamashita I (1990) Initiation of meiosis and sporulation in Saccharomyces cerevisiae requires a novel protein kinase homologue. Mol Gen Genet 221:176–186

    CAS  PubMed  Google Scholar 

  • Zickler D, Kleckner N (1999) Meiotic chromosomes: integrating structure and function. Annu Rev Genet 33:603–754

    CAS  PubMed  Google Scholar 

Download references

Acknowledgements

We thank George Brush for his advice on electrophoretic separation of phosphoproteins, and we thank members of our laboratory and Dr. Helena Friesen for helpful comments on this manuscript. This work was supported by a Canadian Institute of Health Research Grant (MOP-6826) to J.S. N.L. was supported in part by a Life Sciences Summer Studentship from the University of Toronto

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to J. Segall.

Additional information

Communicated by D. Y. Thomas

Rights and permissions

Reprints and permissions

About this article

Cite this article

Shubassi, G., Luca, N., Pak, J. et al. Activity of phosphoforms and truncated versions of Ndt80, a checkpoint-regulated sporulation-specific transcription factor of Saccharomyces cerevisiae . Mol Genet Genomics 270, 324–336 (2003). https://doi.org/10.1007/s00438-003-0922-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00438-003-0922-3

Keywords

Navigation