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Global changes in genomic methylation levels during early development of the zebrafish embryo

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Abstract

We have examined the methylation status of the zebrafish genome during early embryogenesis and we find evidence that methylation fluxes do occur in that organism. The parental genetic contributions to the zygote are, initially, differently methylated with the genome of the sperm being hypermethylated relative to the genome of the oocyte. Post-fertilization there is an immediate decrease in methylation of the embryonic genome but the methylation begins to increase rapidly and is re-established by the gastrulation stage. These results are consistent with the results of Santos et al. (Dev Biol 241:172–182, 2002), who examined the methylation of early mouse embryos, and this conservation argues that demethylation/re-methylation is an important part of vertebrate development.

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References

  • Bird A, Taggart M, Frommer M, Miller O, Macleod D (1985) A fraction of the mouse genome that is derived from islands of nonmethylated, CpG-rich DNA. Cell 40:91–99

    Article  CAS  PubMed  Google Scholar 

  • Collas P (1998) Modulation of plasmid DNA methylation and expression in zebrafish embryos. Nucleic Acids Res 26:4454–4461

    Article  CAS  PubMed  Google Scholar 

  • Ekker M, Fritz A, Westerfield M (1992) Identification of two families of satellite-like repetitive DNA sequences from the zebrafish (Brachydanio rerio). Genomics 13:1169–1173

    CAS  PubMed  Google Scholar 

  • He L, Zhu Z, Faras A, Guise K, Hackett P, Kapuscinski A (1992) Characterization of AluI repeats of zebrafish (Brachydanio rerio). Mol Mar Biol Biotechnol 1:125–135

    CAS  PubMed  Google Scholar 

  • Li E, Bestor T, Jaenisch R (1992) Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 69:915–926

    Article  CAS  PubMed  Google Scholar 

  • Macleod D, Clark V, Bird A (1999) Absence of genome-wide changes in DNA methylation during development of the zebrafish. Nat Genet 23:139–140

    Article  CAS  PubMed  Google Scholar 

  • Martin C, Laforest L, Akimenko M, Ekker M (1999) A role for DNA methylation in gastrulation and somite patterning. Dev Biol 206:189–205

    Article  CAS  PubMed  Google Scholar 

  • Monk M (1995) Epigenetic programming of differential gene expression in development and evolution. Dev Genet 17:188–197

    CAS  PubMed  Google Scholar 

  • Monk M, Boubelik M, Lehnert S (1987) Temporal and regional changes in DNA methylation in the embryonic, extraembryonic and germ cell lineages during mouse embryo development. Development 99:371–382

    CAS  PubMed  Google Scholar 

  • Okano M, Bell D, Haber D, Li E (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99:247–257

    Article  CAS  PubMed  Google Scholar 

  • Reik W, Walter J (2001) Genomic imprinting: parental influence on the genome. Nat Rev Genet 2:21–32

    Article  CAS  PubMed  Google Scholar 

  • Sambrook J, Fritsch E, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.

    Google Scholar 

  • Santos F, Hendrich B, Reik W, Dean W (2002) Dynamic reprogramming of DNA methylation in the early mouse embryo. Dev Biol 241:172–182

    Article  CAS  PubMed  Google Scholar 

  • Sapienza C, Peterson A, Rossant J, Balling R (1987) Degree of methylation of transgenes is dependent on the gamete of origin. Nature 328:251–254

    Article  CAS  PubMed  Google Scholar 

  • Stancheva I, Meehan R (2000) Transient depletion of xDnmt1 leads to premature gene activation in Xenopus embryos. Gene Dev 14:313–327

    CAS  PubMed  Google Scholar 

  • Westerfield M (1995) The zebrafish book. University of Oregon Press, Eugene, Ore.

Download references

Acknowledgements

The authors wish to thank Denise Flint and Christine Dueck for editorial assistance. This work was supported by the Natural Sciences and Engineering Research Council of Canada. A.M. was supported by fellowships from the Children’s Hospital Foundation of Manitoba and the Manitoba Health Research Council.

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Correspondence to R. A. McGowan.

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Edited by D. Tautz

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Mhanni, A.A., McGowan, R.A. Global changes in genomic methylation levels during early development of the zebrafish embryo. Dev Genes Evol 214, 412–417 (2004). https://doi.org/10.1007/s00427-004-0418-0

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  • DOI: https://doi.org/10.1007/s00427-004-0418-0

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