Skip to main content
Log in

The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength

  • Rapid Communication
  • Published:
Planta Aims and scope Submit manuscript

Abstract

The N-terminal region of the plant Myc-like basic helix–loop–helix transcription factors (bHLH TFs) contains two domains. Approximately, 190 amino acids at the N-terminus comprise an interaction domain, a.k.a. Myb-interacting-region (MIR) for its primary function of interacting with Myb-like TFs. Following, the interaction domain is an activation (or acidic) domain responsible for transactivation. We have previously discovered that a lysine to methionine substitution (K157M) in the interaction domain of Myc-RP of Perilla frutescens leads to a 50-fold increase in transactivation activity. The result suggests that mutations in the interaction domain affect transactivation. The highly conserved nature of this lysine residue in many Myc-like bHLH TFs prompted us to explore the functional importance of this residue within the TF family and the influence of the interaction domain on the activation domain in transactivation. We found that the replacement of the equivalent lysine with methionine significantly affects the transactivation activities of two other Myc-RP homologues, Delila from snapdragon and Lc from maize. In addition to methionine, substitution with several other amino acids at this position has positive effects on transcriptional activity. A neighboring conserved alanine residue (A159 in Myc-RP, A161 in Delila and A172 in Lc) also affects transactivation. Substitution of this alanine residue to an aspartic acid abolished transactivation of both Myc-RP and Delila and severely reduced transactivation of Lc. Ectopic expression of a Myc-RP K157M mutant in transgenic tobacco resulted in increased anthocyanin accumulation compared to plants expressing the wild-type gene. Our study reveals the potential cooperation between functional domains of the bHLH TFs.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Abbreviations

bHLH TF:

Basic helix–loop–helix transcription factor

β-Gal:

β-galactosidase

References

  • Bailey PC, Martin C, Toledo-Ortiz G, Quail PH, Huq E, Heim MA, Jakoby M, Werber M, Weisshaar B (2003) Update on the basic helix–loop–helix transcription factor gene family in Arabidopsis thaliana. Plant Cell 15:2497–2502

    Article  PubMed  CAS  Google Scholar 

  • Chapman-Smith A, Lutwyche JK, Whitelaw ML (2004) Contribution of the Per/Arnt/Sim (PAS) domains to DNA binding by the basic helix–loop–helix PAS transcriptional regulators. J Biol Chem 279:5353–5362

    Article  PubMed  CAS  Google Scholar 

  • Chatterjee R, Yuan L (2006) Directed evolution of metabolic pathways. Trends Biotechnol 24:28–38

    Article  PubMed  CAS  Google Scholar 

  • de Vetten N, Quattrocchio F, Mol J, Koes R (1997) The an11 locus controlling flower pigmentation in petunia encodes a novel WD-repeat protein conserved in yeast, plants, and animals. Genes Dev 11:1422–1434

    Article  PubMed  Google Scholar 

  • Dey N, Maiti IB (1999) Structure and promoter/leader deletion analysis of mirabilis mosaic virus (MMV) full-length transcript promoter in transgenic plants. Plant Mol Biol 40:771–782

    Article  PubMed  CAS  Google Scholar 

  • Feller A, Hernandez JM, Grotewold E (2006) An ACT-like domain participates in the dimerization of several plant basic-helix–loop–helix transcription factors. J Biol Chem 281:28964–28974

    Article  PubMed  CAS  Google Scholar 

  • Goff SA, Klein TM, Roth BA, Fromm ME, Cone KC, Radicella JP, Chandler VL (1990) Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues. Embo J 9:2517–2522

    PubMed  CAS  Google Scholar 

  • Goff SA, Cone KC, Chandler VL (1992) Functional analysis of the transcriptional activator encoded by the maize B gene: evidence for a direct functional interaction between two classes of regulatory proteins. Genes Dev 6:864–875

    Article  PubMed  CAS  Google Scholar 

  • Gong ZZ, Yamagishi E, Yamazaki M, Saito K (1999a) A constitutively expressed Myc-like gene involved in anthocyanin biosynthesis from Perilla frutescens: molecular characterization, heterologous expression in transgenic plants and transactivation in yeast cells. Plant Mol Biol 41:33–44

    Article  PubMed  CAS  Google Scholar 

  • Gong ZZ, Yamazaki M, Saito K (1999b) A light-inducible Myb-like gene that is specifically expressed in red Perilla frutescens and presumably acts as a determining factor of the anthocyanin forma. Mol Gen Genet 262:65–72

    PubMed  CAS  Google Scholar 

  • Gong ZZ, Yamazaki M, Saito A (2000) Critical role of alanine-161 in Delila protein involved in regulation of anthocyanin pigmentation for transcriptional activation in yeast. Plant Biotech 17:309–314

    CAS  Google Scholar 

  • Grotewold E, Sainz MB, Tagliani L, Hernandez JM, Bowen B, Chandler VL (2000) Identification of the residues in the Myb domain of maize C1 that specify the interaction with the bHLH cofactor R. Proc Natl Acad Sci USA 97:13579–13584

    Article  PubMed  CAS  Google Scholar 

  • Heim MA, Jakoby M, Werber M, Martin C, Weisshaar B, Bailey PC (2003) The basic helix–loop–helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol Biol Evol 20:735–747

    Article  PubMed  CAS  Google Scholar 

  • Hernandez JM, Heine GF, Irani NG, Feller A, Kim MG, Matulnik T, Chandler VL, Grotewold E (2004) Different mechanisms participate in the R-dependent activity of the R2R3 MYB transcription factor C1. J Biol Chem 279:48205–48213

    Article  PubMed  CAS  Google Scholar 

  • Koes R, Verweij W, Quattrocchio F (2005) Flavonoids: a colorful model for the regulation and evolution of biochemical pathways. Trends Plant Sci 10:236–242

    Article  PubMed  CAS  Google Scholar 

  • Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D (2006) Genome-wide analysis of basic/helix–loop–helix transcription factor family in rice and Arabidopsis. Plant Physiol 141:1167–1184

    Article  PubMed  CAS  Google Scholar 

  • Lu J, Sloan SR (2002) The basic helix–loop–helix domain of the E47 transcription factor requires other protein regions for full DNA binding activity. Biochem Biophys Res Commun 290:1521–1528

    Article  PubMed  CAS  Google Scholar 

  • Martin C, Prescott A, Mackay S, Bartlett J, Vrijlandt E (1991) Control of anthocyanin biosynthesis in flowers of Antirrhinum majus. Plant J 1:37–49

    Article  PubMed  CAS  Google Scholar 

  • Mol J, Grotewold E, Koes R (1998) How genes paint flowers and seeds. Trends Plant Sci 3:212–217

    Article  Google Scholar 

  • Morgenstern B, Atchley WR (1999) Evolution of bHLH transcription factors: modular evolution by domain shuffling? Mol Biol Evol 16:1654–1663

    PubMed  CAS  Google Scholar 

  • Ordiz MI, Barbas CF 3rd Beachy RN (2002) Regulation of transgene expression in plants with polydactyl zinc finger transcription factors. Proc Natl Acad Sci USA 99:13290–13295

    Article  PubMed  CAS  Google Scholar 

  • Pattanaik S, Dey N, Bhattacharyya S, Maiti IB (2004) Isolation of full-length transcript promoter from the Strawberry vein banding virus (SVBV) and expression analysis by protoplasts transient assays and in transgenic plants. Plant Sci 167:427–438

    Article  CAS  Google Scholar 

  • Pattanaik S, Xie CH, Kong Q, Shen KA, Yuan L (2006) Directed evolution of plant basic helix–loop–helix transcription factors for the improvement of transactivational properties. Biochim Biophys Acta 1759:308–318

    PubMed  CAS  Google Scholar 

  • Payne CT, Zhang F, Lloyd AM (2000) GL3 encodes a bHLH protein that regulates trichome development in Arabidopsis through interaction with GL1 and TTG1. Genetics 156:1349–1362

    PubMed  CAS  Google Scholar 

  • Quattrocchio F, Wing JF, Leppen H, Mol J, Koes RE (1993) Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes. Plant Cell 5: 1497–1512

    Article  PubMed  CAS  Google Scholar 

  • Quattrocchio F, Wing JF, van der Woude K, Mol JN, Koes R (1998) Analysis of bHLH and MYB domain proteins: species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Plant J 13:475–488

    Article  PubMed  CAS  Google Scholar 

  • Roberts SG (2000) Mechanisms of action of transcription activation and repression domains. Cell Mol Life Sci 57:1149–1160

    Article  PubMed  CAS  Google Scholar 

  • Saito K, Yamazaki M (2002) Biochemistry and molecular biology of the late-stage of biosynthesis of anthocyanin: lessons from Perilla frutescens as a model plant. New Phytol 155:9–23

    Article  CAS  Google Scholar 

  • Sanchez JP, Ullman C, Moore M, Choo Y, Chua NH (2006) Regulation of Arabidopsis thaliana 4-coumarate:coenzyme-A ligase-1 expression by artificial zinc finger chimeras. Plant Biotechnol J 4:103–114

    Article  PubMed  CAS  Google Scholar 

  • Smolen GA, Pawlowski L, Wilensky SE, Bender J (2002) Dominant alleles of the basic helix–loop–helix transcription factor ATR2 activate stress-responsive genes in Arabidopsis. Genetics 161:1235–1246

    PubMed  CAS  Google Scholar 

  • Sompornpailin K, Makita Y, Yamazaki M, Saito K (2002) A WD-repeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens. Plant Mol Biol 50:485–495

    Article  PubMed  CAS  Google Scholar 

  • Stemmer WP (1994) Rapid evolution of a protein in vitro by DNA shuffling. Nature 370:389–391

    Article  PubMed  CAS  Google Scholar 

  • Toledo-Ortiz G, Huq E, Quail PH (2003) The Arabidopsis basic/helix–loop–helix transcription factor family. Plant Cell 15:1749–1770

    Article  PubMed  CAS  Google Scholar 

  • Yuan L, Kurek I, English J, Keenan R (2005) Laboratory-directed protein evolution. Microbiol Mol Biol Rev 69:373–392

    Article  PubMed  CAS  Google Scholar 

  • Zheng L, Baumann U, Reymond JL (2004) An efficient one-step site-directed and site-saturation mutagenesis protocol. Nucleic Acids Res 32:e115

    Article  PubMed  Google Scholar 

Download references

Acknowledgements

This work is supported by a grant from the Kentucky Tobacco Research and Development Center, University of Kentucky (to L.Y.). We would like to thank Professor K. Saito for providing Myc-RP cDNA and Professor Susan Wessler for Lc cDNA, and express our appreciation to the John Innes Research Center for supplying the Delila cDNA. We also thank Dr. I. Maiti for providing the MMV promoter and helpful suggestions, Dr. Soumendra K. Naik for the assistance in molecular analysis of the transgenic plants, and K. Shen for the critical reading of the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ling Yuan.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Pattanaik, S., Xie, C.H. & Yuan, L. The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta 227, 707–715 (2008). https://doi.org/10.1007/s00425-007-0676-y

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00425-007-0676-y

Keywords

Navigation