Skip to main content
Log in

Localization of the pre-squalene segment of the isoprenoid biosynthetic pathway in mammalian peroxisomes

  • Original Paper
  • Published:
Histochemistry and Cell Biology Aims and scope Submit manuscript

Abstract

Previous studies have indicated that the early steps in the isoprenoid/cholesterol biosynthetic pathway occur in peroxisomes. However, the role of peroxisomes in cholesterol biosynthesis has recently been questioned in several reports concluding that three of the peroxisomal cholesterol biosynthetic enzymes, namely mevalonate kinase, phosphomevalonate kinase, and mevalonate diphosphate decarboxylase, do not localize to peroxisomes in human cells even though they contain consensus peroxisomal targeting signals. We re-investigated the subcellular localization of the cholesterol biosynthetic enzymes of the pre-squalene segment in human cells by using new stable isotopic techniques and data computations with isotopomer spectral analysis, in combination with immunofluorescence and cell permeabilization techniques. Our present findings clearly show and confirm previous studies that the pre-squalene segment of the cholesterol biosynthetic pathway is localized to peroxisomes. In addition, our data are consistent with the hypothesis that acetyl-CoA derived from peroxisomal β-oxidation of very long-chain fatty acids and medium-chain dicarboxylic acids is preferentially channeled to cholesterol synthesis inside the peroxisomes without mixing with the cytosolic acetyl-CoA pool.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

Abbreviations

AOX:

Acyl-CoA oxidase

FPP:

Farnesyl diphosphate

GFP:

Green fluorescent protein

HMGCR:

HMG-CoA reductase

IDI1:

Isopentenyl diphosphate isomerase 1

ISA:

Isotopomer spectral analysis

MID:

Mass isotopomer distributions

MPD:

Mevalonate diphosphate decarboxylase

MVK:

Mevalonate kinase

PEX:

Peroxin

PMP:

Peroxisomal membrane protein

PMVK:

Phosphomevalonate kinase

PP:

Diphosphate

PTS:

Peroxisomal targeting signal

References

  • Aboushadi N, Shackelford JE, Jessani N, Gentile A, Krisans SK (2000) Characterization of peroxisomal 3-hydroxy-3-methylglutaryl coenzyme A reductase in UT2 cells: sterol biosynthesis, phosphorylation, degradation, and statin inhibition. Biochemistry 39:237–247

    Article  PubMed  CAS  Google Scholar 

  • Aden DP, Fogel A, Plotkin S, Damjanov I, Knowles BB (1979) Controlled synthesis of HBsAG in a differentiated human liver carcinoma-derived cell line. Nature 282:615–616

    Article  PubMed  CAS  Google Scholar 

  • Alexson SEH, Fujiky Y, Shio H, Lazarow PB (1985) Partial disassembly of peroxisomes. J Cell Biol 101:294–305

    Article  PubMed  CAS  Google Scholar 

  • Amery L, Fransen M, De Nys K, Mannaerts GP, Veldhoven PP van (2000) Mitochondrial and peroxisomal targeting of 2-methylacyl-CoA racemase in humans. J Lipid Res 41:1752–1759

    PubMed  CAS  Google Scholar 

  • Antonenkov VD, Croes K, Waelkens E, Veldhoven PP van, Mannaerts GP (2000) Identification, purification and characterization of an acetoacetyl-CoA thiolase from rat liver peroxisomes. Eur J Biochem 267:2981–2990

    Article  PubMed  CAS  Google Scholar 

  • Antonenkov VD, Sormunen RT, Hiltunen JK (2004a) The rat liver peroxisomal membrane forms a permeability barrier for cofactors but not for small metabolites in vitro. J Cell Sci 117:5633–5642

    Article  CAS  Google Scholar 

  • Antonenkov VD, Sormunen RT, Hiltunen JK (2004b) The behavior of peroxisomes in vitro: mammalian peroxisomes are osmotically sensitive particles. Am J Physiol Cell Physiol 287:C1623–C1635

    Article  CAS  Google Scholar 

  • Bederman IR, Reszko AE, Kasumov T, David F, Wasserman DH, Kelleher JK, Brunengraber H (2004a) Zonation of labeling of lipogenic acetyl-CoA across the liver: implications for studies of lipogenesis by mass isotopomer analysis. J Biol Chem 279:43207–43216

    Article  CAS  Google Scholar 

  • Bederman IR, Kasumov T, Reszko AE, David F, Brunengraber H, Kelleher JK (2004b) In vitro modeling of fatty acid synthesis under conditions simulating the zonation of lipogenic [13C]acetyl-CoA enrichment in the liver. J Biol Chem 279:43217–43226

    Article  CAS  Google Scholar 

  • Beier K, Völkl A, Hashimoto T, Fahimi HD (1988) Selective induction of peroxisomal enzymes by the hypolipidemic drug bezafibrate. Detection of modulations by automatic image analysis in conjunction with immunoelectron microscopy and immunoblotting. Eur J Cell Biol 46:383–393

    PubMed  CAS  Google Scholar 

  • Bian F, Kasumov T, Thomas KR, Jobbins KA, David F, Minkler PE, Hoppel CL, Brunengraber H (2005) Peroxisomal and mitochondrial oxidation of fatty acids in the heart, assessed from the 13C labeling of malonyl-CoA and the acetyl moiety of citrate. J Biol Chem 280:9265–9271

    Article  PubMed  CAS  Google Scholar 

  • Biardi L, Krisans SK (1996) Compartmentalization of cholesterol biosynthesis. J Biol Chem 271:1784–1788

    Article  PubMed  CAS  Google Scholar 

  • Biardi L, Sreedhar A, Zokaei A, Vartak NB, Bozeat RL, Shackelford JE, Keller GA, Krisans SK (1994) Mevalonate kinase is predominantly localized in peroxisomes and is defective in patients with peroxisome deficiency disorders. J Biol Chem 269:1197–1205

    PubMed  CAS  Google Scholar 

  • Breitling R, Krisans SK (2002) A second gene for peroxisomal HMG-CoA reductase? A genomic reassessment. J Lipid Res 43:2031–2036

    Article  PubMed  CAS  Google Scholar 

  • Chambliss KL, Slaughter CA, Schreiner R, Hoffmann GF, Gibson KM (1996) Molecular cloning of human phosphomevalonate kinase and identification of a consensus peroxisomal targeting sequence. J Biol Chem 271:17330–17334

    Article  PubMed  CAS  Google Scholar 

  • Dammai V, Subramani S (2001) The human peroxisomal targeting signal receptor, Pex5p, is translocated into the peroxisomal matrix and recycled to the cytosol. Cell 105:187–196

    Article  PubMed  CAS  Google Scholar 

  • Emanuelsson O, Elofsson A, Heijne G von, Cristóbal S (2003) In silico prediction of the peroxisomal proteome in fungi, plants and animals. J Mol Biol 330:443–456

    Article  PubMed  CAS  Google Scholar 

  • Ghys K, Fransen M, Mannaerts GP, Veldhoven PP van (2002) Functional studies on human Pex7p: subcellular localization and interaction with proteins containing a peroxisome-targeting signal type 2 and other peroxins. Biochem J 365:41–50

    Article  PubMed  CAS  Google Scholar 

  • Goldstein JL, Brown MS (1990) Regulation of the mevalonate pathway. Nature 343:425–430

    Article  PubMed  CAS  Google Scholar 

  • Gould SJ, Keller GA, Schneider M, Howell SH, Garrard LJ, Goodman JM, Distel B, Tabak H, Subramani S (1990) Peroxisomal protein import is conserved between yeast, plants, insects and mammals. EMBO J 9:85–90

    PubMed  CAS  Google Scholar 

  • Guda C, Subramaniam S (2005) TARGET: a new method for predicting protein subcellular localization in eukaryotes. Bioinformatics 21:3963–3969

    Article  PubMed  CAS  Google Scholar 

  • Gupta SD, Mehan RS, Tansey TR, Chen HT, Goping G, Goldberg I, Shechter I (1999) Differential binding of proteins to peroxisomes in rat hepatoma cells: unique association of enzymes involved in isoprenoid metabolism. J Lipid Res 40:1572–1584

    PubMed  CAS  Google Scholar 

  • Hogenboom S, Tuyp JJM, Espeel M, Koster J, Wanders RJA, Waterham HR (2004a) Mevalonate kinase is a cytosolic enzyme in humans. J Cell Sci 117:631–639

    Article  CAS  Google Scholar 

  • Hogenboom S, Tuyp JJM, Espeel M, Koster J, Wanders RJA, Waterham HR (2004b) Phosphomevalonate kinase is a cytosolic protein in humans. J Lipid Res 45:697–705

    Article  CAS  Google Scholar 

  • Hogenboom S, Tuyp JJM, Espeel M, Koster J, Wanders RJA, Waterham HR (2004c) Human mevalonate pyrophosphate decarboxylase is localized in the cytosol. Mol Genet Metab 81:216–224

    Article  CAS  Google Scholar 

  • Hovik R, Brodal B, Bartlett K, Osmundsen H (1991) Metabolism of acetyl-CoA by isolated peroxisomal fractions: formation of acetate and acetoacetyl-CoA. J Lipid Res 32:993–999

    PubMed  CAS  Google Scholar 

  • Huber PAJ, Birdsey GM, Lumb MJ, Prowse DTR, Perkins TJ, Knight DR, Danpure CJ (2005) Peroxisomal import of human alanine:glyoxylate aminotransferase requires ancillary targeting information remote from its C terminus. J Biol Chem 280:27111–27120

    Article  PubMed  CAS  Google Scholar 

  • Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD (2003) Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 302:2141–2144

    Article  PubMed  CAS  Google Scholar 

  • Kelleher JK, Masterson TM (1992) Model equations for condensation biosynthesis using stable isotopes and radioisotopes. Am J Physiol 262:E118–E125

    PubMed  CAS  Google Scholar 

  • Keller GA, Barton MC, Shapiro DJ, Singer SJ (1985) 3-hydroxy-3-methylglutaryl-coenzyme A reductase is present in peroxisomes in normal rat liver cells. Proc Natl Acad Sci USA 82:770–774

    Article  PubMed  CAS  Google Scholar 

  • Keller GA, Pazirandeh M, Krisans SK (1986) 3-Hydroxy-3-methylglutaryl coenzyme A reductase localization in rat liver peroxisomes and microsomes of control and cholestyramine-treated animals: quantitative biochemical and immunoelectron microscopical analyses. J Cell Biol 103:875–886

    Article  PubMed  CAS  Google Scholar 

  • Kotti TJ, Savolainen K, Helander HM, Yagi A, Novikov DK, Kalkkinen N, Conzelmann E, Hiltunen JK, Schmitz W (2000) In mouse alpha-methylacyl-CoA racemase, the same gene product is simultaneously located in mitochondria and peroxisomes. J Biol Chem 275:20887–20895

    Article  PubMed  CAS  Google Scholar 

  • Kovacs WJ, Faust PL, Keller GA, Krisans SK (2001) Purification of brain peroxisomes and localization of 3-hydroxy-3-methylglutaryl coenzyme A reductase. Eur J Biochem 268:4850–4859

    Article  PubMed  CAS  Google Scholar 

  • Kovacs WJ, Olivier LM, Krisans SK (2002) Central role of peroxisomes in isoprenoid biosynthesis. Prog Lipid Res 41:369–391

    Article  PubMed  CAS  Google Scholar 

  • Kovacs WJ, Shackelford JE, Tape KN, Richards MJ, Faust PL, Fliesler SJ, Krisans SK (2004a) Disturbed cholesterol homeostasis in a peroxisome-deficient PEX2 knockout mouse model. Mol Cell Biol 24:1–13

    Article  CAS  Google Scholar 

  • Kovacs WJ, Schrader M, Walter I, Stangl H (2004b) The hypolipidemic compound cetaben induces changes in Golgi morphology and vesicle movement. Histochem Cell Biol 122:95–109

    Article  CAS  Google Scholar 

  • Krisans SK, Ericsson J, Edwards PA, Keller GA (1994) Farnesyl-diphosphate synthase is localized in peroxisomes. J Biol Chem 269:14165–14169

    PubMed  CAS  Google Scholar 

  • Lametschwandtner G, Brocard C, Fransen M, Veldhoven P van, Berger J, Hartig A (1998) The difference in recognition of terminal tripeptides as peroxisomal targeting signal 1 between yeast and human is due to different affinities of their receptor Pex5p to the cognate signal and to residues adjacent to it. J Biol Chem 273:33635–33643

    Article  PubMed  CAS  Google Scholar 

  • Leighton F, Bergseth S, Rortveit T, Christiansen EN, Bremer J (1989) Free acetate production by rat hepatocytes during peroxisomal fatty acid and dicarboxylic acid oxidation. J Biol Chem 264:10347–10350

    PubMed  CAS  Google Scholar 

  • Lindenthal B, Aldaghlas TA, Holleran AL, Sudhop T, Berthold HK, Bergmann K von, Kelleher JK (2002) Isotopomer spectral analysis of intermediates of cholesterol synthesis in human subjects and hepatic cells. Am J Physiol Endocrinol Metab 282:E1222–E1230

    PubMed  CAS  Google Scholar 

  • Lüers G, Hashimoto T, Fahimi HD, Völkl A (1993) Biogenesis of peroxisomes: isolation and characterization of two distinct peroxisomal populations from normal and regenerating rat liver. J Cell Biol 121:1271–1280

    Article  PubMed  Google Scholar 

  • Mannaerts GP, Veldhoven PP van, Casteels M (2000) Peroxisomal lipid degradation via beta- and alpha-oxidation in mammals. Cell Biochem Biophys 32:73–87

    Article  PubMed  CAS  Google Scholar 

  • Mukai S, Ghaedi K, Fujiki Y (2002) Intracellular localization, function, and dysfunction of the peroxisome-targeting signal type 2 receptor, Pex7p, in mammalian cells. J Biol Chem 277:9548–9561

    Article  PubMed  CAS  Google Scholar 

  • Neuberger G, Maurer-Stroh S, Eisenhaber B, Hartig A, Eisenhaber F (2003a) Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences. J Mol Biol 328:567–579

    Article  CAS  Google Scholar 

  • Neuberger G, Maurer-Stroh S, Eisenhaber B, Hartig A, Eisenhaber F (2003b) Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence. J Mol Biol 328:581–592

    Article  CAS  Google Scholar 

  • Oatey PB, Lumb MJ, Danpure CJ (1996) Molecular basis of the variable mitochondrial and peroxisomal localization of alanine-glyoxylate aminotransferase. Eur J Biochem 241:374–385

    Article  PubMed  CAS  Google Scholar 

  • Oda T, Mizuno T, Ito K, Funai T, Ichiyama A, Miura S (2000) Peroxisomal and mitochondrial targeting of serine:pyruvate/alanine:glyoxylate aminotransferase in rat liver. Cell Biochem Biophys 32:277–281

    Article  PubMed  CAS  Google Scholar 

  • Olivier LM, Chambliss KL, Gibson KM, Krisans SK (1999) Characterization of phosphomevalonate kinase: chromosomal localization, regulation, and subcellular targeting. J Lipid Res 40:672–679

    PubMed  CAS  Google Scholar 

  • Olivier LM, Kovacs W, Masuda K, Keller GA, Krisans SK (2000) Identification of peroxisomal targeting signals in cholesterol biosynthetic enzymes: AA-CoA thiolase, HMG-CoA synthase, MPPD, and FPP synthase. J Lipid Res 41:1921–1935

    PubMed  CAS  Google Scholar 

  • Palmieri L, Rottensteiner H, Girzalsky W, Scarcia P, Palmieri F, Erdmann R (2001) Identification and functional reconstitution of the yeast peroxisomal adenine nucleotide transporter. EMBO J 20:5049–5059

    Article  PubMed  CAS  Google Scholar 

  • Paton VG, Shackelford JE, Krisans SK (1997) Cloning and subcellular localization of hamster and rat isopentenyl diphosphate dimethylallyl diphosphate isomerase. J Biol Chem 272:18945–18950

    Article  PubMed  CAS  Google Scholar 

  • Petriv OI, Tang L, Titorenko VI, Rachubinski RA (2004) A new definition for the consensus sequence of the peroxisome targeting signal type 2. J Mol Biol 341:119–134

    Article  PubMed  CAS  Google Scholar 

  • Rachubinski RA, Subramani S (1995) How proteins penetrate peroxisomes. Cell 83:525–528

    Article  PubMed  CAS  Google Scholar 

  • Reszko AE, Kasumov T, David F, Jobbins KA, Thomas KR, Hoppel CL, Brunengraber H, Rosiers C des (2004) Peroxisomal fatty acid oxidation is a substantial source of the acetyl moiety of malonyl-CoA in rat heart. J Biol Chem 279:19574–19579

    Article  PubMed  CAS  Google Scholar 

  • Sacksteder KA, Morrell JC, Wanders RJA, Matalon R, Gould SJ (1999) MCD encodes peroxisomal and cytoplasmic forms of malonyl-CoA decarboxylase and is mutated in malonyl-CoA decarboxylase deficiency. J Biol Chem 274:24461–24468

    Article  PubMed  CAS  Google Scholar 

  • Schrader M, Fahimi HD (2004) Mammalian peroxisomes and reactive oxygen species. Histochem Cell Biol 122:383–393

    Article  PubMed  CAS  Google Scholar 

  • Stamellos KD, Shackelford JE, Tanaka RD, Krisans SK (1992) Mevalonate kinase is localized in rat liver peroxisomes. J Biol Chem 267:5560–5568

    PubMed  CAS  Google Scholar 

  • Stamellos KD, Shackelford JE, Shechter I, Jiang G, Conrad D, Keller GA, Krisans SK (1993) Subcellular localization of squalene synthase in rat hepatic cells. Biochemical and immunochemical evidence. J Biol Chem 268:12825–12836

    PubMed  CAS  Google Scholar 

  • Subramani S (1993) Protein import into peroxisomes and biogenesis of the organelle. Annu Rev Cell Biol 9:445–478

    Article  PubMed  CAS  Google Scholar 

  • Thompson SL, Krisans SK (1990) Rat liver peroxisomes catalyze the initial step in cholesterol synthesis. The condensation of acetyl-CoA units into acetoacetyl-CoA. J Biol Chem 265:5731–5735

    PubMed  CAS  Google Scholar 

  • Verleur N, Wanders RJA (1993) Permeability properties of peroxisomes in digitonin-permeabilized rat hepatocytes. Eur J Biochem 218:75–82

    Article  PubMed  CAS  Google Scholar 

  • Wanders RJ (2004) Metabolic and molecular basis of peroxisomal disorders: a review. Am J Med Genet 126A:355–375

    Article  Google Scholar 

  • Weinhofer I, Kunze M, Stangl H, Porter FD, Berger J (2006) Peroxisomal cholesterol biosynthesis and Smith–Lemli–Opitz syndrome. Biochem Biophys Res Commun 345:205–209

    Article  PubMed  CAS  Google Scholar 

  • Xie D, Li A, Wang M, Fan Z, Feng H (2005) LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST. Nucleic Acids Res 33:W105–W110

    Article  PubMed  CAS  Google Scholar 

  • Yoshihara T, Hamamoto T, Munakata R, Tajiri R, Ohsumi M, Yokota S (2001) Localization of cytosolic NADP-dependent isocitrate dehydrogenase in the peroxisomes of rat liver cells: biochemical and immunocytochemical studies. J Histochem Cytochem 49:1123–1131

    PubMed  CAS  Google Scholar 

  • Zhang Y, Agarwal KC, Beylot M, Soloviev MV, David F, Reider MW, Anderson VE, Tserng KY, Brunengraber H (1994) Nonhomogeneous labeling of liver extra-mitochondrial acetyl-CoA. Implications for the probing of lipogenic acetyl-CoA via drug acetylation and for the production of acetate by the liver. J Biol Chem 269:11025–11029

    PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by National Institutes of Health (NIH) grants DK58238 and DK58040 to S.K.K. We thank Drs. Eveline Baumgart-Vogt and Herbert Stangl for helpful discussions and comments on the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Werner J. Kovacs.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kovacs, W.J., Tape, K.N., Shackelford, J.E. et al. Localization of the pre-squalene segment of the isoprenoid biosynthetic pathway in mammalian peroxisomes. Histochem Cell Biol 127, 273–290 (2007). https://doi.org/10.1007/s00418-006-0254-6

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00418-006-0254-6

Keywords

Navigation